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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0770900 |
| Transcript ID | LotjaGi1g1v0770900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell cycle checkpoint control family protein; TAIR: AT3G05480.1 cell cycle checkpoint control protein family; Swiss-Prot: sp|Q9Z0F6|RAD9A_MOUSE Cell cycle checkpoint control protein RAD9A; TrEMBL-Plants: tr|G7KXM9|G7KXM9_MEDTR Cell cycle checkpoint control RAD9A-like protein; Found in the gene: LotjaGi1g1v0770900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134311370..134315042) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGTTGACGTTAAGCGACAACGCTCTGAAAACCTTCGCGCGATGCATCACCTGTCTCGCGCGTATCGGAAATGAGCT CTCCATTCAAGCTTCTCCCTCTCAGGTAACATCAACTATTGATTTTAGGGTTTTGGAAGCAAATTCACAGTTGCTATTGA TTTTTCACAGCTTCTTCTGCACACTATCAATTCTTCACGATCTGCATATCAATCCATCACTTTCAAACCTGGATTCTTCG ACGTCTACACCGTTTCCACTAACCCCGTGCAATGTAGTGTGCTTCTCAAGGTTTTTGTGGAATGCTCTTTTCTCATTCAA CATTTTTTTTGTTTGCAAATGAAGAGTTTTTGTTCTCACTCGCGTTCGCATACTTTGATTAGGCCGTTTGTGCTGTTCTT AGGACACCGATTGCAAATATTGATCACTTGACCGTGAAACTGCCAGATCCAGATGCTTCCAAAGTTCAGTGGATTTTGGA CTGCTACAGTGGTAAGCTACTCAGTACTTCAATACACTCACAATCTCTGGTGGTTGGCTAACAATGAAAGAATCATGTTT GTATGTTAGTAATGTTACTATGAGAGACTAATCATTTACTTGTCTTTTGTAACTGCAACCTGGTTAATGTATTTGGTTTG TAGATCTAAATTAGGTAATTGTTATGGAATCAAAGCTGCTTTTTACTGATAATATGGTCTTTTTTTGGTTAGAAGTGGAC TGAATAATGTGACATTTAATTCTAGCTCAGTGTTGTCTAACATTATTTCGGCGAGTAGCTTAGGGGTTTGCTACAGCCCA TGACTTTATGTAACTCTAACCAGAAAATTTGAAATTGGCCGCATATGAAGTCTTGAAACTGTATAGTTGCAGTTTTTTCT TAAAGTGGACTCTAGGATGTAGTGTGTGTTTGAGAAAGCTTCCAACACACATATATGTTTCGGATGTCAAAGACTTGAAA GAGAGGGAAAGGGTCTATTGGAGTTCAACGGAATTTCACATCAAGCCAAACACAATAGTAGTAATTCGAAGCCTACTCTA GACATAACATAATACTCAGGGCCAGGGGTACTATGTAAACGGTGTTAGGCATCTCATGATATATGTGCCTATTTTCTCAT CACTCTACAATTTATTTATGTGTGTGTGTGTTTCACCTTATTGTGGGTTAAAATGAATGTTATTTATTAACTACTGCAGG TATGAAGAAAACCTACTGGATTACTTGCAATGTAGAACCTGACATACAGAACTTGTCTCTTGATAGGCAAAAATTTCCAA GCAACTTTGTCGTGAGGCCTCGAGATATGAACAGGTTACTTTCTAATTTTCAGTCATCTCTTCAAGAGATCACTGTTATT GCAACAGAACCTGCTTCACTACCTCCTGATTCAGCAAATGACATTGGTGGAAAGGCTGTTGAACTTCGAAGTTATATTGA CCCAACCAAAGGTAAAGAAGATGCTTTTGTAGTAGCTTCATTGGAAACAGTCATTTTATGCACAGTGTTTACATGGCAGA CAATGACTCGTCGCTACACACCCAGCTGTGGATAGATCCTAAAGAGGAATTTTTGCAGTATGTTCATACTGGAGATCCGA TAGATGTGACTTTCAGTGTAAAGGAACTAAAGGTAAAGTAAACCAATCCTTTTGTATTTGGTTGACAGAAGTATCTTGGG CAACTGTTGACACAGACTACATTTACCTGATATTTGGATTTTTATAATGTTATCCTCCATTATTTCTTTATTCTTGCTTT CTCCCATGCTAAGGCTAATTTATTGTTTTTAAAGGCACCTGATGTTCTTGTCATCAATCTGCAGGCATTTCTTTCATTTT GTGAGGGCTGTGAAGTTGACATCCATTTTCATTTTGAGAAAGCTGGCGAGTAAGATATAATGATATATTTAGTTTCGGAC ATGATTTACACTCCTTGTCCTCTAATATATAAGTTGTACGATTGATGGCATGCATTTTACCAATGAATATGAATGCATGC TCTACATTTTAAGTTTTTCATTTGTCAGTGTACATGTCATTGTCTAGTGAACTCCAAATAAAATCAAGGAAATGAGAAAA ATTGCAGAGATTGACTTGTCATATAGGGTTTACAGTGGAGAAACATCCTGCACACACAAACATTGAATTACAAAAAAACC TATTTTTCTTACATTCCATATTTTATGATTAGAGTATTTGATAGTTATGAATTATGATGTGTTATTAATCTTTATTCTTG GATGATATTGTGATTGCCAAGCAGACCTATCCTTATGGCACCTAAATTTGGTTTGGAAGATGGATCTCACTCAAATTTTG ATGCGACCCTTGTACTGGCGACCATGTTAACATCTCAACTACATGAAGGCGCTGCCTCAGAACCTCTGGTGGTAGATGCC AGAACACATGCTCAAACTGAAGAAAGAAATGGATCTCATGCGGAGGAAGAAAATTGCAGAACAAATACATCAGAGCTTCA ATCTGACCACACCCGTGTTTGGTCAGACCTCTCAGGTAATTTCAATATTGAGATGGATAATATGTTATGGATCTAAATTC ATATTTGTTTTTTCATTTTGCAGCAACTGCAGTTAAAAATATGAGTGGTTTGGAAGAAAGGCCGGCACAAGAACAAACAG TTTTGAATGATAATGAGCAAAGAGAAATTCAAAGGATTAGTACAATACGAATTTCAAGAAAAACATCCGCTGCGGGAAAT AATCCCACTGGTTCCAACATGTATCCTTTATGTCACCATTTACCTCTGTATCTTAGCATTTCCAGCACCGTGTTTCACTT TCCCCACAAAGTTGTGCCGGCAAATATTACAAATGCTGCATTTCTTACCATCTGTTATCTGGATAAAATTTTTAGAGCAG TTACAAAGCATGCATGCTCATACCAGACCCTAGGTATGAAGCCTTTTATTGGGGTTATAAATTAGCATGCGAGTCCCTTT CATTTAAGCAATTGCAAACTGCAACATTCTCGCAAAATTGTTGAGATGGCTGTTGTTGAAGGTCTAAGAAGCATAGGCAC TTACAAAGAGCAGTCACACATGCTCATACTCATATTGAACATTTCATGGACACTAATTTCTAGCTGTATTTTACAAACTT CTTTACTTTTATTTTTTGGACTTATATGCCAATATGGTTGGAAATATCAAAATAATCAGAAAAATTACGGCATTTTAATA TTTTATCATGTCTACTATGACTAATGTTTACTTTTAAAACATTAATTCTATCTTTTAATTTAAGATTCAGGTTGTATTAA CTGTTTACTAATTATATGTTCTATTTCAGTGGTATTGTGCTGTATCGGTGATTTTCAGCTTACGGTTTAGTTGGGATTTT TATGACCTAATTGTTGGATTTAAGTATTTTTTACCTTGACTGATATCTCAGCTGCCGACCAACTGAAAAAGATAGTGTGC AAGCGCCTCAAGGTTAGCTAACCAGGCTATTTAACGAGCTTATCTGACAGTCTTTTAGTTCTTTCAGTAACTGATATAAT CAATACAATTATCCAGATATGTTGCAAGATAATAATCAAGCGTTTTCACAGCATCATCCCAGTAATTGGGTAGATGCTGA GGAGGAGGATGAAGATGATGCGAATGAGAATGAGCAGTACATTCAGGCAACACCACCATATTATGAAGATTAG
CDS sequence (LotjaGi1g1v0770900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTGACGTTAAGCGACAACGCTCTGAAAACCTTCGCGCGATGCATCACCTGTCTCGCGCGTATCGGAAATGAGCT CTCCATTCAAGCTTCTCCCTCTCAGCTTCTTCTGCACACTATCAATTCTTCACGATCTGCATATCAATCCATCACTTTCA AACCTGGATTCTTCGACGTCTACACCGTTTCCACTAACCCCGTGCAATGTAGTGTGCTTCTCAAGGCCGTTTGTGCTGTT CTTAGGACACCGATTGCAAATATTGATCACTTGACCGTGAAACTGCCAGATCCAGATGCTTCCAAAGTTCAGTGGATTTT GGACTGCTACAGTGGTATGAAGAAAACCTACTGGATTACTTGCAATGTAGAACCTGACATACAGAACTTGTCTCTTGATA GGCAAAAATTTCCAAGCAACTTTGTCGTGAGGCCTCGAGATATGAACAGGTTACTTTCTAATTTTCAGTCATCTCTTCAA GAGATCACTGTTATTGCAACAGAACCTGCTTCACTACCTCCTGATTCAGCAAATGACATTGGTGGAAAGGCTGTTGAACT TCGAAGTTATATTGACCCAACCAAAGACAATGACTCGTCGCTACACACCCAGCTGTGGATAGATCCTAAAGAGGAATTTT TGCAGTATGTTCATACTGGAGATCCGATAGATGTGACTTTCAGTGTAAAGGAACTAAAGGCATTTCTTTCATTTTGTGAG GGCTGTGAAGTTGACATCCATTTTCATTTTGAGAAAGCTGGCGAACCTATCCTTATGGCACCTAAATTTGGTTTGGAAGA TGGATCTCACTCAAATTTTGATGCGACCCTTGTACTGGCGACCATGTTAACATCTCAACTACATGAAGGCGCTGCCTCAG AACCTCTGGTGGTAGATGCCAGAACACATGCTCAAACTGAAGAAAGAAATGGATCTCATGCGGAGGAAGAAAATTGCAGA ACAAATACATCAGAGCTTCAATCTGACCACACCCGTGTTTGGTCAGACCTCTCAGCAACTGCAGTTAAAAATATGAGTGG TTTGGAAGAAAGGCCGGCACAAGAACAAACAGTTTTGAATGATAATGAGCAAAGAGAAATTCAAAGGATTAGTACAATAC GAATTTCAAGAAAAACATCCGCTGCGGGAAATAATCCCACTGGTTCCAACATCTGCCGACCAACTGAAAAAGATAGTGTG CAAGCGCCTCAAGATATGTTGCAAGATAATAATCAAGCGTTTTCACAGCATCATCCCAGTAATTGGGTAGATGCTGAGGA GGAGGATGAAGATGATGCGAATGAGAATGAGCAGTACATTCAGGCAACACCACCATATTATGAAGATTAG
Protein sequence (LotjaGi1g1v0770900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELTLSDNALKTFARCITCLARIGNELSIQASPSQLLLHTINSSRSAYQSITFKPGFFDVYTVSTNPVQCSVLLKAVCAV LRTPIANIDHLTVKLPDPDASKVQWILDCYSGMKKTYWITCNVEPDIQNLSLDRQKFPSNFVVRPRDMNRLLSNFQSSLQ EITVIATEPASLPPDSANDIGGKAVELRSYIDPTKDNDSSLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKAFLSFCE GCEVDIHFHFEKAGEPILMAPKFGLEDGSHSNFDATLVLATMLTSQLHEGAASEPLVVDARTHAQTEERNGSHAEEENCR TNTSELQSDHTRVWSDLSATAVKNMSGLEERPAQEQTVLNDNEQREIQRISTIRISRKTSAAGNNPTGSNICRPTEKDSV QAPQDMLQDNNQAFSQHHPSNWVDAEEEDEDDANENEQYIQATPPYYED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 444 | 444 | 1.9E-152 | – | |
| PANTHER | 1 | 444 | 444 | 1.9E-152 | ||
| PIRSF | 1 | 446 | 446 | 7.0E-99 | ||
| Gene3D | 2 | 282 | 281 | 1.6E-72 | – | |
| SUPERFAMILY | 10 | 119 | 110 | 7.33E-13 | – | |
| Pfam | 13 | 282 | 270 | 1.3E-74 | ||
| MobiDBLite | 303 | 332 | 30 | - | – | |
| MobiDBLite | 303 | 323 | 21 | - | – | |
| MobiDBLite | 377 | 419 | 43 | - | – | |
| MobiDBLite | 377 | 449 | 73 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | DNA damage checkpoint | A cell cycle checkpoint that regulates progression through the cell cycle in response to DNA damage. A DNA damage checkpoint may blocks cell cycle progression (in G1, G2 or metaphase) or slow the rate at which S phase proceeds. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Cellular component | Checkpoint clamp complex | Conserved heterotrimeric complex of PCNA-like proteins that is loaded onto DNA at sites of DNA damage. |
Expression pattern of LotjaGi1g1v0770900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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