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LotjaGi2g1v0013800.8

Overview

Field Value
Gene ID LotjaGi2g1v0013800
Transcript ID LotjaGi2g1v0013800.8
Related isoforms 7
Lotus japonicus genome version Gifu v1.2
Description Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A0A1D1Z485|A0A1D1Z485_9ARAE Zinc finger protein MAGPIE; Found in the gene: LotjaGi2g1v0013800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:5019915..5020671) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCAACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGGGAGCAAAATTTACAGCTCCACAGAAGAGG ACACAACTTGCCTTGGAAACTAAAGCAGAAGAATACAAAAGAGCAGGCAAAGAGAAAGGTTTATCTCTGTCCTGAACCCA CTTGTGTCCACCATGACCCTTCACGGGCTCTTGGAGACCTCACTGGGATCAAGAAGCACTTCTCTCGGAAGCACGGTGAG AAGAAGTGGAAGTGTGAAAAGTGCTCTAAGAAGTATGCTGTTCAATCAGATTGGAAAGCACATTCTAAGACTTGTGGTAC AAGAGAGTATAGATGTGACTGTGGCACTCTCTTCTCCAGGTACCAAAATCTATGTCCAACTTAGTTGAGTTTAGTTTTGT TGAATGTTTGGTGTACTTACATGAGTACGTTTTAAGAAAAATTATTTGAGCTTATCTTAAGAATGCTTAATAGCTTATGA CATAATTATAAGCTGATTTGATCAGCTTATTTTGATAAACTATTTAACTTAAAAATAAGACCTTATACCTACAAATACGA TATTTTGGGTTTATTTCATTAAATTTTTTAAATGAACTTATGAATAACTTTTTATAAAATAAGTTTTAACTTTCATATAC ACTTAATTATGGTTTTTACTCAAACACACCATAAGAATAAGGCACCGGCAGCTACAGCAAATTTAAAAGTTAAAATGCAT TGTAATAATAATGAAAAGGCATTGAGTGCCTGTTTGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0013800.8) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGGGAGCAAAATTTACAGCTCCACAGAAGAGG ACACAACTTGCCTTGGAAACTAAAGCAGAAGAATACAAAAGAGCAGGCAAAGAGAAAGGTTTATCTCTGTCCTGAACCCA CTTGTGTCCACCATGACCCTTCACGGGCTCTTGGAGACCTCACTGGGATCAAGAAGCACTTCTCTCGGAAGCACGGTGAG AAGAAGTGGAAGTGTGAAAAGTGCTCTAAGAAGTATGCTGTTCAATCAGATTGGAAAGCACATTCTAAGACTTGTGGTAC AAGAGAGTATAGATGTGACTGTGGCACTCTCTTCTCCAGGCATTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0013800.8) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKNTKEQAKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGE KKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10593
1 120 120 2.6E-104 –
PANTHER
PTHR10593:SF113
1 120 120 2.6E-104 –
Gene3D
G3DSA:3.30.160.60
2 29 28 4.2E-6 –
SUPERFAMILY
SSF57667
5 103 99 1.54E-8
IPR036236
SMART
SM00355
6 28 23 0.0052
IPR013087
ProSiteProfiles
PS50157
6 28 23 10.99
IPR013087
Pfam
PF12171
6 28 23 3.6E-6
IPR022755
ProSitePatterns
PS00028
8 28 21 -
IPR013087
Gene3D
G3DSA:3.30.160.60
31 107 77 1.6E-5 –
SMART
SM00355
48 78 31 160.0
IPR013087
SMART
SM00355
83 103 21 140.0
IPR013087

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0013800.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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