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LotjaGi2g1v0063000.2

Overview

Field Value
Gene ID LotjaGi2g1v0063000
Transcript ID LotjaGi2g1v0063000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing protein; TAIR: AT1G62350.2 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q1PFH7|PPR89_ARATH Pentatricopeptide repeat-containing protein At1g62350; TrEMBL-Plants: tr|G7I945|G7I945_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi2g1v0063000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:14591737..14595740) extracted from Lotus japonicus Gifu genome v1.2.

TATAGATGTAATCACAAGAAAATGCAGAACATAGTAGCACACACAGGTGCTGCACCAAGGCAACTCTTCTGAATCCTTAA TGCTGCGGCTTGCACTGCGAAGAGCTTCTTCAGCGGCCACCGCGTACACCCTTAATGGCGGTGGCCGGTTAATTTCCGGT TCGGCGTCGAGTCCGAGCCTTTCGATATGGAGGCGGAGGAAGGAGTTGGGGAAAGAAGGCCTCGTCGTCGCTAAAGAGCT CAAGAGGCTCCAATCCGACCCGGTCCGCCTCGACCGGTTCATCCGGTCCAGCGTTTCTCGCTTACTCAAGTCAGACCTTG TTGCCGTCCTCGCTGAGTTTCAGAGACAGGACAATGTCTTTCTCTCCATCAAGGTTCTTTCTTTTTCTTTTATCTGTTTC TCATAGATGGAAGTTGAACACTTTTTATTTATATAAATTTTTTTAATTAATTAGGTTAGCTGATATATTGATTTTTTTGT GTGGTATTGTTGATTTCTAGATTGTCATTTTGGTGTGTGATAACTAATATGAGAAGGTTAAGTGATGGATTTGGTGGCAC TTAATTGTTTACTTGGGAAGTTACATAGAAGATCAGCTAGGTCATTTAAACTGGAATTTGTCTTTTAATGGTGATAAGAA GCAAAAAGAAAAATAGAAACCGTTTTTGTTGAATTTTGCTCTTTTAAAGTCAGTAATAATTCACTTTAAATAAAAAAATG TCAAGATATTCCAGTCACTGGTACGAAAATAAGGGTTATTCGAGATAATTAGTATTGGTTTTCTTTTTTATGTAAGAGCT AACTTTAGATGAATCAAAATCCTTTCTATGCTAATTACAAGTTACAATGTTACTTGCAGCCAACAATATGGCCTTACCCT GTCTTAATCTCAATATGATGCTAGATTCATTATGTTTCTTACATTTTCATTGAGTATGAGTTGCATTGTAGCAAAGCAAC CCGGTGATTATGGACTGGACATGAGCTGTCACATTCTAATGCCCTGAAAAATATAATTTTAATTTTTAGGGGGGGAGGTC TTTGATATCAACTCTTGAATGTTGGAAGACATTGATGTTTGTAGAGTAGGGTGGCTATCAGGGTATGAATGCTTTCATAA GCTTCAGAAAAAGCCGAGAAAATATTAATCCAAATTTCAAAGAGCAAATAGACCTACTATTTTATTGTATTGACCATTAA CAAAAACTAATTTCCAGTTGTGTACTCCTGTCATCTTGAAAGCTTGGCCTATCTGAGAAGAAGCAACAAGAGAGTGTGTT TTTGAACTCTTGACCTAACTCTTACGAGTTCACGATTCTAAAACACAATCGCATGTAAAGAGTAAACTCTCTTTTTGACA AAATTGATAAACTCTGTTGTTTTGATAAGTTCTGAGGATGTATAAATGGTGTTGGCCTCAAAATGTACACTACTACACTT TTGGTTGACGCTCTTAAATCTTATGTACTTGGGTTGAATTGCTTATGCTCTGTAATGTGTTCGATTATAAAGCTAATTTT ATGTTTTCATCAGTTTTTCCCTTTTGTTAACCACAAGATAATGTTAGTGCTTGGCAAAGTATAATTAACATAAAAGTAGG GCGGTTGGGCCAAGTATAGAGTTATGTTTATACCTTTTAGTTGCTTTGTTATGAAGTTGTGACGTTGAATGCATATGGAT ATGGTATTATATATGTTTGGATAACAAGATATATTTTCTAAATAGTATTTTTGATGCATTTAAACTCGTAACAGCTCAAG AATTGTGTTTAGGATTTGACTTTATCAAGTCTTCATGAGTTTTCCTAAACACTCAAGTAACAAACTCTAAGCATTGTCTT GGATGTAAACTCATAAGAGAATTGAGATTAATGAGAGAGCACTACCTAATAAGAAATGACATTCATTTTTGTTGAAATTA TGAAGATCAAGTGATCAACTATCCAGCTAATTCTTCTCCTACTTATTTTTGAGCTATATTTGAGAAAAAAATATCTTGAG CAAACCAATTGATTTGCTTTGTTTCATACTCCTATGCTACTGTACTTTATGACTGAAAATGACTTATTTAATCCTAATGT GTAATGAATATGTAATACAAATTGAACCAGAAAAAACACAATAATTGAGTGCAGAGCAAAATTCTTGATGTTGACTTTGA CTTAGCTAAGTAATTGATCTCAAATTTGAACGTGCATGGGTTATTTAACTATGAATCTTTCATTTCTCAGTTGTATGATA TTGTGCGCAAAGAAATTTGGTACAGGCCGGACATGTTCTTCTACAGAGACATGCTTATGATGCTTGCAAGAAACAGAAGG GTTGAAGAAGCAAAGAGAGTCTGGAATGATTTGAAAGGGGAGGAGGTTTTATTTGATCAGCATACATTTGGAGACATCAT TAGATCTTTTCTAGACAGTGGATTGCCCTCAGAGGCAATGGAAATATATGAAGAAATGAGACAATCCCCTGAGCCCCCTC TGTCGTTGCCTTTTCGCGTGATATTGAAAGGGCTCATTCCATATCCAGAACTAAGAGAAAAGGTAAAAGATGACTTTTTA GAGGTTTTCCCTGATATGATCATCTATGACCCACCCGAGGACTTGTTCGATGATGATGAAAAACCCAAGGATGAAGCTAA TGAGAATGTTACTGCTTGATGTTGAGATATTGATGCTTACAGCTTGATGTCATGCAATGTGGGGAGATGGTAGCTGTTGT TGTAAGTATCCACAAATTGTTTTGCTTCTGTTTTGGTCAGCTCAGATTTTCCAACTTTTGAAGTTCTGTTTTTTTTTTAG TGTAATCATTGTACATCTGAGCCTCAACAGAATGAGAGAATGTTGATTTTGATGATGCATTACTTGAGCTTAGGTTTGAA ATAGATAAGGAGGTTGTTCAATGATAAAAATATTTAGTGCTGATTTTGTTAGTTGGCTTTTAGTTCTCTAAGTGTAGTTT TTAAGCTGGTTTTTGTTGCCTTTTATCAGGGTGAATTATGCTTTCCCCTTAGTATGTAGGCTCTTAGTTTTATCTTGGCT TAATTCCAGTTTGGGTCCCTGATGTTTCACAAATGTGTGGTCTGCACCCCCGTGTTTAAAATGTGCGGTCAAGCTCCATG ATGTCTCTAAAACGTGTGATCCAAGCCCTTCCGTCTGTTTCCGTCAGTTGACCGAACGGAGCTCGCCACCAGGTCATTCA TTAAATAACGTGGTTTGTCCACGTGTAATAAAACATCTGAGCCTCAACATAATGAGAGAATGTTGATTTTGATGATGCAT TACTTGAGCTTAGGTTTGAAATAGATAAGGAGGTTGTTCAATGATAAAAATATTTAGTGCTGATTTTGTTAGTTGGCTTT TAGTTCTCTAAGTGTAGTTTTTAAGCTGGTTTTTGTTGCCTTTTATCAGGGTGAATTATGCTTTCCCCTTGGTATGTAGG CTCTTAGTTTTATCTTGACTTAATTCCAGTTTGGGCCCCTGTTGTTTCACAAATGTGTGGTCTGCACCCCCGTGTTTAAA ATGTGCTGTCAAGCTCCATGATGTCTCTAAAACGGGTGATCCAAGCCCTTCCGTCTGTTTCCGCCAGTTGACCGAACGGA GTTCGCCACCAGGTCATTCATTAAATGACGTGGTCTGTCCATGTGTAATAAAACTTTATTTAAACCTTTTTTTTTTCACC AAATAAATTCCGCCCCCCCCCCCCAAATGTAAAACCTGATCCCCCCAAATTTAACCTACAATTAACCTAACCTAAGTACC TAACCCACAACATCCAATCACATTAACCAACCTTCTTCACAAACACAACACAATCTCCTCAAGAACCCACCTCCAACCCT AGAACAAAAACACGATGATTCTTGGAGAGAAAAGGGGGGGACAAGGTCCTAAGAACACACACCTCCAACCCCACCACCAT CTCATCATTTTCAACCTCAACAACCAAAAAGCCAACAATGCCAAAAAATGAGATAAGAAATCCAGATATCCCAGAAATTG AAAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0063000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGCGGCTTGCACTGCGAAGAGCTTCTTCAGCGGCCACCGCGTACACCCTTAATGGCGGTGGCCGGTTAATTTCCGG TTCGGCGTCGAGTCCGAGCCTTTCGATATGGAGGCGGAGGAAGGAGTTGGGGAAAGAAGGCCTCGTCGTCGCTAAAGAGC TCAAGAGGCTCCAATCCGACCCGGTCCGCCTCGACCGGTTCATCCGGTCCAGCGTTTCTCGCTTACTCAAGTCAGACCTT GTTGCCGTCCTCGCTGAGTTTCAGAGACAGGACAATGTCTTTCTCTCCATCAAGTTGTATGATATTGTGCGCAAAGAAAT TTGGTACAGGCCGGACATGTTCTTCTACAGAGACATGCTTATGATGCTTGCAAGAAACAGAAGGGTTGAAGAAGCAAAGA GAGTCTGGAATGATTTGAAAGGGGAGGAGGTTTTATTTGATCAGCATACATTTGGAGACATCATTAGATCTTTTCTAGAC AGTGGATTGCCCTCAGAGGCAATGGAAATATATGAAGAAATGAGACAATCCCCTGAGCCCCCTCTGTCGTTGCCTTTTCG CGTGATATTGAAAGGGCTCATTCCATATCCAGAACTAAGAGAAAAGGTAAAAGATGACTTTTTAGAGGTTTTCCCTGATA TGATCATCTATGACCCACCCGAGGACTTGTTCGATGATGATGAAAAACCCAAGGATGAAGCTAATGAGAATGTTACTGCT TGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0063000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLRLALRRASSAATAYTLNGGGRLISGSASSPSLSIWRRRKELGKEGLVVAKELKRLQSDPVRLDRFIRSSVSRLLKSDL VAVLAEFQRQDNVFLSIKLYDIVRKEIWYRPDMFFYRDMLMMLARNRRVEEAKRVWNDLKGEEVLFDQHTFGDIIRSFLD SGLPSEAMEIYEEMRQSPEPPLSLPFRVILKGLIPYPELREKVKDDFLEVFPDMIIYDPPEDLFDDDEKPKDEANENVTA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46870:SF1
11 230 220 4.1E-128 –
PANTHER
PTHR46870
11 230 220 4.1E-128 –
Gene3D
G3DSA:1.25.40.10
41 227 187 5.2E-37
IPR011990
ProSiteProfiles
PS51375
112 146 35 8.035
IPR002885
Pfam
PF01535
116 142 27 0.081
IPR002885
ProSiteProfiles
PS51375
147 181 35 10.26
IPR002885
Pfam
PF01535
150 176 27 0.002
IPR002885
MobiDBLite
mobidb-lite
221 240 20 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0063000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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