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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF01535
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 1321 results. Now displaying 1 of 27 with 50 rows per page. This search has taken 0.350s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0000719.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 312103 314781 +
2 domain predictions
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Lj0g3v0005979.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Glycine max] gi|356519887|ref|XP_003528600.1| chr0 2253785 2256561 +
2 domain predictions
 –
Lj0g3v0010869.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Glycine max] gi|356577033|ref|XP_003556634.1| chr0 4279241 4281725 +
2 domain predictions
 –
Lj0g3v0015519.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357487221|ref|XP_003613898.1| chr0 6048263 6049099 +
2 domain predictions
 –
Lj0g3v0020909.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Glycine max] gi|356523586|ref|XP_003530418.1| chr0 8414081 8416209 -
2 domain predictions
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Lj0g3v0022159.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Glycine max] gi|356577724|ref|XP_003556973.1| chr0 8957448 8959485 -
2 domain predictions
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Lj0g3v0023469.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g14470-like [Glycine max] gi|356498922|ref|XP_003518295.1| chr0 9368133 9373652 +
2 domain predictions
 –
Lj0g3v0035769.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g77405-like [Fragaria vesca subsp]. vesca] gi|470112997|ref|XP_004292714.1| chr0 11380387 11383513 +
2 domain predictions
 –
Lj0g3v0040399.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357506483|ref|XP_003623530.1| chr0 13148751 13149608 -
2 domain predictions
 –
Lj0g3v0048609.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like [Fragaria vesca subsp]. vesca] gi|470113906|ref|XP_004293160.1| chr0 16406487 16410053 +
2 domain predictions
 –
Lj0g3v0054629.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357465899|ref|XP_003603234.1| chr0 17547483 17548244 +
2 domain predictions
 –
Lj0g3v0056049.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like isoform X1 [Cicer arietinum] gi|502165572|ref|XP_004513623.1| chr0 18190422 18194425 +
2 domain predictions
 –
Lj0g3v0058699.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Glycine max] gi|356569756|ref|XP_003553062.1| chr0 19316312 19319713 +
2 domain predictions
 –
Lj0g3v0059939.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532361|ref|XP_003534742.1| chr0 19914329 19916280 +
2 domain predictions
 –
Lj0g3v0059959.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532361|ref|XP_003534742.1| chr0 19917774 19920509 +
2 domain predictions
 –
Lj0g3v0067129.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like [Glycine max] gi|356508382|ref|XP_003522936.1| chr0 23760356 23763066 +
2 domain predictions
 –
Lj0g3v0070249.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Cicer arietinum] gi|502078188|ref|XP_004485865.1| chr0 25582162 25585824 +
2 domain predictions
 –
Lj0g3v0071389.1
n.a. pentatricopeptide (PPR) repeat-containing protein [Cucumis melo subsp]. melo] gi|307136045|gb|ADN33897.1| chr0 26168404 26169740 +
2 domain predictions
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Lj0g3v0075409.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 28602551 28606626 +
2 domain predictions
 –
Lj0g3v0075419.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 28602827 28607323 +
2 domain predictions
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Lj0g3v0076569.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g73710-like [Cicer arietinum] gi|502096635|ref|XP_004490797.1| chr0 29218756 29228567 -
2 domain predictions
 –
Lj0g3v0076569.2
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g73710-like [Cicer arietinum] gi|502096635|ref|XP_004490797.1| chr0 29225527 29228567 -
2 domain predictions
 –
Lj0g3v0078539.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like isoform X1 [Cicer arietinum] gi|502153966|ref|XP_004509525.1| chr0 30232657 30234882 +
2 domain predictions
 –
Lj0g3v0078579.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Glycine max] gi|356540339|ref|XP_003538647.1| chr0 30265408 30267641 -
2 domain predictions
 –
Lj0g3v0079559.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 30771688 30776777 +
2 domain predictions
 –
Lj0g3v0079949.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357503117|ref|XP_003621847.1| chr0 30927666 30928505 +
2 domain predictions
 –
Lj0g3v0082099.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like [Glycine max] gi|356516061|ref|XP_003526715.1| chr0 32190736 32192974 +
2 domain predictions
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Lj0g3v0082219.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Cicer arietinum] gi|502177168|ref|XP_004516023.1| chr0 32248740 32250072 -
2 domain predictions
 –
Lj0g3v0082629.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| chr0 32464818 32466032 -
2 domain predictions
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Lj0g3v0084289.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like isoform X1 [Cicer arietinum] gi|502123904|ref|XP_004498305.1| chr0 33476200 33479757 +
2 domain predictions
 –
Lj0g3v0084299.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357438675|ref|XP_003589614.1| chr0 33477040 33479906 +
2 domain predictions
 –
Lj0g3v0084789.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g49740-like [Cicer arietinum] gi|502165633|ref|XP_004513641.1| chr0 33825648 33828377 +
2 domain predictions
 –
Lj0g3v0086789.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g40240, mitochondrial-like [Glycine max] gi|356529368|ref|XP_003533266.1| chr0 35077836 35080366 +
2 domain predictions
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Lj0g3v0089069.1
n.a. Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma cacao] gi|508720249|gb|EOY12146.1| chr0 36482857 36484104 +
2 domain predictions
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Lj0g3v0089839.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357468161|ref|XP_003604365.1| chr0 36933734 36936494 -
2 domain predictions
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Lj0g3v0090229.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g25580-like [Glycine max] gi|356510940|ref|XP_003524191.1| chr0 37116461 37119826 -
2 domain predictions
 –
Lj0g3v0092809.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Cicer arietinum] gi|502129532|ref|XP_004500336.1| chr0 38722004 38723934 +
2 domain predictions
 –
Lj0g3v0093789.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Cicer arietinum] gi|502124462|ref|XP_004498539.1| chr0 39375457 39376960 -
2 domain predictions
 –
Lj0g3v0093799.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic-like [Glycine max] gi|356554511|ref|XP_003545589.1| chr0 39375643 39377521 -
2 domain predictions
 –
Lj0g3v0095179.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Cicer arietinum] gi|502168201|ref|XP_004514343.1| chr0 40077857 40081921 +
2 domain predictions
 –
Lj0g3v0099669.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g17140-like [Cicer arietinum] gi|502142432|ref|XP_004504955.1| chr0 42277000 42279904 +
2 domain predictions
 –
Lj0g3v0101269.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g13880-like isoform X1 [Cicer arietinum] gi|502091464|ref|XP_004489557.1| chr0 42929564 42932678 -
2 domain predictions
 –
Lj0g3v0101829.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Glycine max] gi|356540844|ref|XP_003538894.1| chr0 43238167 43241619 -
2 domain predictions
 –
Lj0g3v0104269.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g36730-like [Glycine max] gi|356567046|ref|XP_003551734.1| chr0 44581221 44583140 +
2 domain predictions
 –
Lj0g3v0104539.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like isoform X1 [Cicer arietinum] gi|502127210|ref|XP_004499603.1| chr0 44766516 44770910 +
2 domain predictions
 –
Lj0g3v0104689.1
n.a. n.a. chr0 44838960 44847892 +
2 domain predictions
 –
Lj0g3v0105239.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357480155|ref|XP_003610363.1| chr0 45102662 45106485 +
2 domain predictions
 –
Lj0g3v0105249.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g33680-like [Cicer arietinum] gi|502171226|ref|XP_004515015.1| chr0 45102662 45105503 +
2 domain predictions
 –
Lj0g3v0109429.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g28010-like [Cicer arietinum] gi|502104041|ref|XP_004492420.1| chr0 47392331 47394515 -
2 domain predictions
 –
Lj0g3v0109449.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g28010-like [Cicer arietinum] gi|502104041|ref|XP_004492420.1| chr0 47397077 47401012 -
2 domain predictions
 –