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LotjaGi2g1v0066400.1

Overview

Field Value
Gene ID LotjaGi2g1v0066400
Transcript ID LotjaGi2g1v0066400.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Exosome complex component; TAIR: AT3G07750.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q15024|EXOS7_HUMAN Exosome complex component RRP42; TrEMBL-Plants: tr|I3T9E4|I3T9E4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0066400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:15608280..15613312) extracted from Lotus japonicus Gifu genome v1.2.

AGGCGGCAGACACTTTCAGGGACCAACTTGACTATTTACCCAAATCAAATTCCCTTACAAACCTAAAAAAATAAAATTAA TATCTCTCTTGCTGATTCAATAAAACCCTAAAAAAATTCCCCTCCCACTTTTTTTTCTCCCTAAACCCAACAGCTTCCAC CTCTTTCCGGCGTACTGTGCTTCTTTATCTCCGTTCAGGCTCCTCCGCCGACCACCGCGCGTCACGCTGCCAGCCATCGT GCCACTATTTCCAAATCACCTCTGTTCCAAGCTTCCATTGGTTTGTCTCTCCTATCATTTTTAGCTGTTGTGCTTGTGCT CTGTTTGGTTGCTTCTGAATATGATAATGCGTTATTTTGTGGTTGAAACTCTTCAAGGCTCCTAACCTCCTTTGATGTTT GATTTCCTCTTTATGGTGGCGTTAAATGCCTTGCTTTGCTGTTCTCTAATTACAATTTGTCTCCATTTTCACTTTTAACT TAACGGCATAGTACTAAAATTGAACTTAACGCGCTATGATGTTGTTAATGTGTTCTGATTTATGTTTTCATTATTTCCGC ATGATGCGCGCACTCAAATTGCTTATTATCGTTATTGCTTCTCTTCATTATGATCTTGTTATATGATTGATTCAAAGTTA TTAGCTTGTGATTACGTCGGTTAATATCCCATCTAAGCTTGTGCCCTAACCCTTCAACATGAAAATGAACTAATGCCTCA AGTTGCTTGTGAAGCTCATTCACATTGGACTTAGGAAAAGAGATTAGCTTGTTTTTTAACTTTGGGCAGGTTAATTGAGT AGTTGGCCTCTATCTCTCTATTTTGTGCTTGTTTTTGAATTGGATATTTTTATTGTGTAAGGTTGTATATCATGAGAATT GTGAGTGATTTTCTTTGGTGAGGTTTTCCTTCGAGTGATTGCTTCTGTTTCGGCTTTAAGCATATCCATCTCTGTAGTGA TATGCTTTAGATAAGTGGGGCTTTGTAAATTAAGAATCTGGACACGCTTCTCTCAGTTATCTGTTGATGTCCTTTGGCTG CAATCACTGCTTCAAGAACAAAGTTTCCTCTGGTGTTTCCCACATTGTACTGTGATAAACTTAGCACTGTTTCTTTGGCT CACAGTCCGGTGTTGCATAAACGAACTAACCACATGGAGCTTGACTTATTTTTTGTTTGAGAAAAAGTGATCAGTAGGAA GCTTCTGGTCCAGCATTTTCCCTCAGCAATCCAAATAGCTGATGCTTTGACCAATCCTTTCTCTTCTGCTCATTTCAATT CATTCAGGCCCAAGCTCTACATCACACCCTAGTAGAACTTGAGGGGGCGGGGGGGGGGGGGGGTATTGGAGCATTAAATC AATGTGCTACTGTGTACACTGGATAATACCCTATGTAATCTGTTAGTTAGTTACATTAGCTGTTAAAAGTTAGTTTTAGT CTCTTCTGTTAGTCACAGCTCATATGAGCTCACTTATATAGTATACTGACAGTGTAATATTTCATTCAAGTAATTTATTC ATGATTGATCAGAATCTTCTTTCTGCTATCTCTCTCTCTCTGAATATCTCTCTACATCCTATAGATACATAGAAGTTTCT ACATTGTACTTTTAGTAATAAAGCTTCTCTAAACTTTGGCAGTTGTAGGAATGGTGGGTTTATCTCTAGGAGAACGACAT TTCATCCAAGGTGGCATTGCTCAGGATCTTCGCTGTGATGGTAGAAAGAGATTGACTTACCGGCCAATCTATGTTGAAAC TGGAGTGATTCCCCAGGTAATGTATGATTTGGCACTTGCTAGGGTATCTTGATGATTTGATCCCTACCTTCTGATTTTTT CATGGTATAAATAGCCTTAATTTGTACATTTATGAACTTCATTATAGGCACATGGTTCAGCTAGAATCAGAATGGGTGCT ACAGAGGTCATTGCCAGTGTGAAGGTTTGTTAAAATGTTTTGATTGATCTTTTCTTTCATGACTCATCACATCTTTTTGT TCAATAGTTTGAATAAATTTTTCAAATCATATCAGTTCTTTTATTAACCATGATATAGTGGCTATACAAGTGCAGGCTGA ACTCGGGAAGCCAAGCTTATTACAACCTGACAAAGGGAAAGTCTCTATATATATTGATTGTAGTTCGACTGCAGAGCCAG CTTTTGAGGTTTGCATATTCTGTTTCTTATCTTCTTTGTTCAGTGAATTACCCAAACGTTCTGGTTTTCTCAATATCATT GAACTTCTAAGTACTTTGAAAGTTGATAGCAAAACAAATAAATAATTTATTGGAACTTTGCTCTTGCACCAAATGCAGTT AGGTTGCTTAGTTTATATTGATACGACAAATAAATAATCCTAAGTTTCCAAACACGTATTGATTATCGTAGTTTGTCCAT GTTTCTTGGGCACCTAGGTTGAAATTCTTTTTGAACTTGAAAGACAAGGCTATACAAGAAAATGAAAGACAACGAGAAAT TGTCTCAACACCCAGAACTGAGAGCCCTAGCCACTATGGCCAAATTCGATCTGTCCCACCCACCTCCTCCCCTTAATACT ACTTTCTCAGTTCCTTTCCTTTCTCTCTCAGTCTCTCTCCATTTCACTAACTATCCTCATTTCTCTCTTCCAGGTGTCGC TTTCTTCTTCCTAGTATAAATATTTAAGTCTGAGGTTCATGACTTTTGGTCCTGCAATTGGCCCACACCCTTTTCCTTGT GTGGGTGTGGACTCGTAACATTAAATCCTTAAAAGTTTGTGATAAGGTTAAATGATGCAATGTATCAATAAGTGTTTGAC TTTGACTCATCAAAGATAGTGTTTTCTGTTATGCTGGCCTAGTTATCATTCTTGATATGTGTAAGGCTCCAGTGTAATTA GTTTTATCGCTGTTCTGTATCTTTGGGATGTATATAGGGTAGAGGGGGTGATGAGTTGTCAGCAGAACTGTCTGTAGCTC TTCAACGCAGTCTCTTGGGGGCTAAAAGTGGAGCAGGTTTGTCTTTCTCCTAGTTTCTAGATTATGCTTACTACCATATG CTATCCCTTCCAAGTTCTTACCTCTTAATTTTATGTTTATTGCTCTTGTCTCTACTGTTTATTTTTCAGGTGCTGGTATT GATCTCTCCTCGCTCGTTGTTGTCGAAGGGAAAATTTGTTGGGATCTTTATATTGATGGACTTGTTGTTAGTTCAGATGG AAATCTGTTAGACGCACTAGGTGCTGCCATTAAGGTACGGCTTAAAATAAAATCAGAATAATAAATGATTGAACAAGATG ACAATAATGGATTCTGGCGATGATGTAATTAGGATTTCAGATGCCATCCTTTGATGATGATGTCAATACTGTTTACTTTT CAAATTTTCCTGTTGGCTCATCATATTTTAGACATTGATCATATTACTAACATGATATTTGGGCTGTTTCAAAATGTGAA CTAAGACCCCCTTCTTTTATTTCATATTACTAACTTGAGTTTGCTATAATCTTATTGCTTCATTAAACTGCTACTTTGTT AGCGTAAATAGTTAGGTCTTTGTTTTGGTAACTGTTATGCCAGCTGTCTATAGCTGTTTGTAATCTGTTAGGTAGTTATA GTCGGTTTTAAACAGATAGTTAGTTACTTGGTCAGTTAGTATAGCTTTTCATGTAAGCTGATCACATAGCTATTCTATAT AAGAGCTATTCTCTGTAATCACTATTCGGATTATTCAATCCTGAATTCTTTCATCTTCTCTTACATGTTTTCTCTTGTCT TACTCTTCTCTTATCTTAATTAACTAAAAATATCTTAGTTCTTTCTACCTGTTATCTTTGTAATTACCCCAAATAATCCT GCAATCAGTTCAATGGAGGTTTTTTGCTCATGGATTTGTCTTTTTACCTAGATGTTGAGAATATAAAGCTATTTTTAGAA TGAAGTGAAAAGGCCCTAATCAATGCAACTGATGCCTTTCATTGTTTTAGGCTGCTTTGAGCAATACAGGTATTCCAAGA GTCCAAGTTGCTGCTGGTGCATCAGGTGATGAGAAACCAGAAGTTGAAATAAGTGATGATGAGTTTTTACAGTTTGACAC ATCTGGAGTCCCTGTTATAGTTACACTGACTAAGGTAACTGTCATGAATCAACTATCCTAAAAACTTGAGGTGTTGGGTG AAGACACACAAATGATTTTATATTATATCTCTAACACAGCCACTCATACAAGAGCCCATTGCACTTTAAGTGTGGACAAT GGTACTTTGTGGACATTGCACCTTGTGTTGAAACTCAATTTTTTTATTAGAATAATGAGGGGTAACAAGGATTGAACTCT GTACCCACTTAGTCATAGAGGCTCTGATACCATGTCATAAATCTTCTATCCCAACAGCTTATGCTGTTGGGTGAAGACAC ATGAATAGTTTTGTAATATATTTCTCTCAATAAGACAATAACATGCTATCATGTGTTCTCAGATTGAACTTGGTTTGTGA ATTACTGAATTTTATACAATCTGATTCCTAGGTTGGGAGGCACTATATTGTGGATGCCACATCAGAAGAGGAATCACAAA TGAGCTCTGCTGTTTCCATATCTGTTAATAGGCAAGGTCACATCTGTGGTGTCACCAAACGAGGAGGTGCGGGGCTGGAT CCAAGTATTGTTCTTGATATGATATCTGTAGCTAAGCATGTGAGCGAGCAGTTAATAAACAAACTGGATTCAGAAATAGC TTCTGCTGAAGCTGAAGATGAGTCATGACATAGAACTTAGTCATGACTATGATATGTTGTTGTACACACTTCAATTATTT AGTAGTTTACCAGGACTAAATTTTGTAACATGCTAACTCTTGCTACGTAGGGATTAAAACTGAGTGTATTTTAGGAATTT GTCTTTTGAGTTTGAGATGGCTGTTTGATGCTCTAATCTTACTAACCACTTATTGAACTGGCCTGGTGTTAGATTCTGTT TCTCAAGTTTTTTGAGCATGCAATAGCTTAGTTAGATGCAGCTAAACCTGAGGAGTAGGAATTAATATATGCG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0066400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGGGTTTATCTCTAGGAGAACGACATTTCATCCAAGGTGGCATTGCTCAGGATCTTCGCTGTGATGGTAGAAAGAG ATTGACTTACCGGCCAATCTATGTTGAAACTGGAGTGATTCCCCAGGCACATGGTTCAGCTAGAATCAGAATGGGTGCTA CAGAGGTCATTGCCAGTGTGAAGGCTGAACTCGGGAAGCCAAGCTTATTACAACCTGACAAAGGGAAAGTCTCTATATAT ATTGATTGTAGTTCGACTGCAGAGCCAGCTTTTGAGGGTAGAGGGGGTGATGAGTTGTCAGCAGAACTGTCTGTAGCTCT TCAACGCAGTCTCTTGGGGGCTAAAAGTGGAGCAGGTGCTGGTATTGATCTCTCCTCGCTCGTTGTTGTCGAAGGGAAAA TTTGTTGGGATCTTTATATTGATGGACTTGTTGTTAGTTCAGATGGAAATCTGTTAGACGCACTAGGTGCTGCCATTAAG GCTGCTTTGAGCAATACAGGTATTCCAAGAGTCCAAGTTGCTGCTGGTGCATCAGGTGATGAGAAACCAGAAGTTGAAAT AAGTGATGATGAGTTTTTACAGTTTGACACATCTGGAGTCCCTGTTATAGTTACACTGACTAAGGTTGGGAGGCACTATA TTGTGGATGCCACATCAGAAGAGGAATCACAAATGAGCTCTGCTGTTTCCATATCTGTTAATAGGCAAGGTCACATCTGT GGTGTCACCAAACGAGGAGGTGCGGGGCTGGATCCAAGTATTGTTCTTGATATGATATCTGTAGCTAAGCATGTGAGCGA GCAGTTAATAAACAAACTGGATTCAGAAATAGCTTCTGCTGAAGCTGAAGATGAGTCATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0066400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASVKAELGKPSLLQPDKGKVSIY IDCSSTAEPAFEGRGGDELSAELSVALQRSLLGAKSGAGAGIDLSSLVVVEGKICWDLYIDGLVVSSDGNLLDALGAAIK AALSNTGIPRVQVAAGASGDEKPEVEISDDEFLQFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRQGHIC GVTKRGGAGLDPSIVLDMISVAKHVSEQLINKLDSEIASAEAEDES
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11097
1 281 281 3.3E-117 –
PANTHER
PTHR11097:SF8
1 281 281 3.3E-117 –
Gene3D
G3DSA:3.30.230.70
3 286 284 4.3E-84
IPR027408
CDD
cd11367
4 278 275 1.94903E-125 –
SUPERFAMILY
SSF54211
4 223 220 9.62E-45
IPR020568
Pfam
PF01138
30 169 140 2.9E-27
IPR001247
SUPERFAMILY
SSF55666
196 283 88 4.23E-23
IPR036345
Pfam
PF03725
200 263 64 1.3E-9
IPR015847
Coils
Coil
263 283 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0066400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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