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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR015847
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 30 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.471s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0107649.1
n.a. Exosome complex exonuclease RRP42 [Medicago truncatula] gi|357518287|ref|XP_003629432.1| chr0 46442956 46445922 -
2 domain predictions
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Lj0g3v0273479.1
n.a. PREDICTED: exosome complex component RRP43-like [Glycine max] gi|356526509|ref|XP_003531860.1| chr0 141750376 141756140 -
3 domain predictions
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Lj0g3v0345829.1
n.a. PREDICTED: exosome complex component RRP42-like [Glycine max] gi|356498705|ref|XP_003518190.1| chr0 181405964 181406131 -
2 domain predictions
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Lj1g3v2631940.2
n.a. PREDICTED: exosome complex exonuclease RRP46 homolog isoform X1 [Cicer arietinum] gi|502105061|ref|XP_004492714.1| chr1 30794518 30798666 +
2 domain predictions
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Lj1g3v3979350.1
n.a. PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Cicer arietinum] gi|502107284|ref|XP_004493216.1| chr1 47291452 47298821 -
2 domain predictions
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Lj1g3v3979350.2
n.a. PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Cicer arietinum] gi|502107284|ref|XP_004493216.1| chr1 47291452 47317513 -
3 domain predictions
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Lj1g3v4753360.1
n.a. PREDICTED: exosome complex component RRP45-like isoform X3 [Cicer arietinum] gi|502122025|ref|XP_004497542.1| chr1 57027597 57032777 -
3 domain predictions
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Lj2g3v0561300.1
n.a. Exosome complex exonuclease RRP46 [Medicago truncatula] gi|357507241|ref|XP_003623909.1| chr2 7563774 7568229 -
2 domain predictions
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Lj2g3v0947360.1
n.a. PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial-like [Cicer arietinum] gi|502090489|ref|XP_004489245.1| chr2 15051767 15062803 -
3 domain predictions
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Lj4g3v0987840.1
n.a. PREDICTED: exosome complex component RRP43-like [Glycine max] gi|356526509|ref|XP_003531860.1| chr4 14389313 14394871 -
3 domain predictions
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LotjaGi1g1v0474000_LC.2
n.a. Exosome complex component; TAIR: AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein; Swiss-Prot: sp|Q9LX74|EXOS5_ARATH Exosome complex exonuclease RRP46 homolog; TrEMBL-Plants: tr|I3SU44|I3SU44_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0474000_LC LjG1.1_chr1 98441752 98445428 +
2 domain predictions
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LotjaGi1g1v0648200.1
n.a. Polyribonucleotide nucleotidyltransferase; TAIR: AT3G03710.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp|Q69LE7|PNP1_ORYSJ Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic; TrEMBL-Plants: tr|G7L1J6|G7L1J6_MEDTR Polyribonucleotide nucleotidyltransferase; Found in the gene: LotjaGi1g1v0648200 LjG1.1_chr1 120577214 120603712 -
2 domain predictions
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LotjaGi1g1v0741200.1
n.a. Exosome complex component; TAIR: AT3G60500.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q9M209|CER7_ARATH Exosome complex component RRP45B; TrEMBL-Plants: tr|G7IP72|G7IP72_MEDTR Exosome complex exonuclease RRP41; Found in the gene: LotjaGi1g1v0741200 LjG1.1_chr1 131493135 131497380 -
2 domain predictions
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LotjaGi1g1v0789600.1
n.a. Ribonuclease PH; TAIR: AT3G61620.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q9SP08|RRP41_ARATH Exosome complex component RRP41 homolog; TrEMBL-Plants: tr|G7L401|G7L401_MEDTR Exosome complex exonuclease RRP41; Found in the gene: LotjaGi1g1v0789600 LjG1.1_chr1 136174555 136179161 -
2 domain predictions
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LotjaGi2g1v0066400.1
n.a. Exosome complex component; TAIR: AT3G07750.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q15024|EXOS7_HUMAN Exosome complex component RRP42; TrEMBL-Plants: tr|I3T9E4|I3T9E4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0066400 LjG1.1_chr2 15608280 15613312 +
2 domain predictions
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LotjaGi2g1v0066400.2
n.a. Exosome complex component; TAIR: AT3G07750.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q15024|EXOS7_HUMAN Exosome complex component RRP42; TrEMBL-Plants: tr|I3T9E4|I3T9E4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0066400 LjG1.1_chr2 15609930 15613027 +
2 domain predictions
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LotjaGi2g1v0243700.1
n.a. Polyribonucleotide nucleotidyltransferase; TAIR: AT5G14580.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp|Q9S7G6|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial; TrEMBL-Plants: tr|V7C0V9|V7C0V9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0243700 LjG1.1_chr2 70704502 70715248 -
2 domain predictions
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LotjaGi2g1v0243700.2
n.a. Polyribonucleotide nucleotidyltransferase; TAIR: AT5G14580.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp|Q9S7G6|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial; TrEMBL-Plants: tr|V7C0V9|V7C0V9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0243700 LjG1.1_chr2 70704502 70715248 -
2 domain predictions
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LotjaGi2g1v0358300.1
n.a. Exosome complex component; TAIR: AT4G27490.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|A2RVK7|RP41L_ARATH Exosome complex component RRP41-like; TrEMBL-Plants: tr|I3SC00|I3SC00_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0358300 LjG1.1_chr2 85541905 85547137 +
2 domain predictions
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LotjaGi2g1v0358300.2
n.a. Exosome complex component; TAIR: AT4G27490.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|A2RVK7|RP41L_ARATH Exosome complex component RRP41-like; TrEMBL-Plants: tr|I3SC00|I3SC00_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0358300 LjG1.1_chr2 85541997 85545946 +
2 domain predictions
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LotjaGi2g1v0358300.3
n.a. Polyribonucleotide nucleotidyltransferase; TAIR: AT4G27490.7 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|A2RVK7|RP41L_ARATH Exosome complex component RRP41-like; TrEMBL-Plants: tr|I3SC00|I3SC00_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0358300 LjG1.1_chr2 85542340 85545955 +
2 domain predictions
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LotjaGi4g1v0121200.1
n.a. Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q2KHU3|EXOS8_BOVIN Exosome complex component RRP43; TrEMBL-Plants: tr|A0A151QPU2|A0A151QPU2_CAJCA Exosome complex exonuclease RRP43; Found in the gene: LotjaGi4g1v0121200 LjG1.1_chr4 17538022 17544343 +
2 domain predictions
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LotjaGi4g1v0121200.2
n.a. Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q2KHU3|EXOS8_BOVIN Exosome complex component RRP43; TrEMBL-Plants: tr|A0A151QPU2|A0A151QPU2_CAJCA Exosome complex exonuclease RRP43; Found in the gene: LotjaGi4g1v0121200 LjG1.1_chr4 17538994 17544295 +
2 domain predictions
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LotjaGi4g1v0121200.3
n.a. Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q2KHU3|EXOS8_BOVIN Exosome complex component RRP43; TrEMBL-Plants: tr|A0A151QPU2|A0A151QPU2_CAJCA Exosome complex exonuclease RRP43; Found in the gene: LotjaGi4g1v0121200 LjG1.1_chr4 17539521 17544216 +
2 domain predictions
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LotjaGi5g1v0053800.1
n.a. Exosome complex component; TAIR: AT3G07750.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q15024|EXOS7_HUMAN Exosome complex component RRP42; TrEMBL-Plants: tr|I3T9E4|I3T9E4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0053800 LjG1.1_chr5 9174849 9183309 +
2 domain predictions
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LotjaGi5g1v0053800.2
n.a. Exosome complex component; TAIR: AT3G07750.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q15024|EXOS7_HUMAN Exosome complex component RRP42; TrEMBL-Plants: tr|I3T9E4|I3T9E4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0053800 LjG1.1_chr5 9177808 9182165 +
2 domain predictions
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LotjaGi6g1v0013300.1
n.a. Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q96B26|EXOS8_HUMAN Exosome complex component RRP43; TrEMBL-Plants: tr|I1KWF8|I1KWF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0013300 LjG1.1_chr6 2460580 2466550 +
2 domain predictions
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LotjaGi6g1v0013300.2
n.a. Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q2KHU3|EXOS8_BOVIN Exosome complex component RRP43; TrEMBL-Plants: tr|A0A151QPU2|A0A151QPU2_CAJCA Exosome complex exonuclease RRP43; Found in the gene: LotjaGi6g1v0013300 LjG1.1_chr6 2460665 2468395 +
2 domain predictions
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LotjaGi6g1v0013300.3
n.a. Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q96B26|EXOS8_HUMAN Exosome complex component RRP43; TrEMBL-Plants: tr|I1MA04|I1MA04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0013300 LjG1.1_chr6 2461427 2466382 +
2 domain predictions
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LotjaGi6g1v0013300.4
n.a. Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q96B26|EXOS8_HUMAN Exosome complex component RRP43; TrEMBL-Plants: tr|I1KWF8|I1KWF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0013300 LjG1.1_chr6 2461427 2466382 +
2 domain predictions
 –