Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PF03725

Source: Pfam

Description

3' exoribonuclease family, domain 2

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 25

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0273479.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: exosome complex component RRP43-like [Glycine max] gi\|356526509\|ref\|XP_003531860.1\|	Domains Coil G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR033196 PF01138 PF03725 PTHR11097 PTHR11097:SF9 SSF54211 SSF55666 cd11369	14
Lj1g3v3979350.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Cicer arietinum] gi\|502107284\|ref\|XP_004493216.1\|	Domains G3DSA:1.10.10.400 G3DSA:2.40.50.140 G3DSA:3.30.1370.10 G3DSA:3.30.230.70 IPR001247 IPR003029 IPR004087 IPR004088 IPR012162 IPR012340 IPR015847 IPR015848 IPR020568 IPR022967 IPR027408 MF_01595 PF00013 PF00575 PF01138 PF03725 PS50084 PS50126 PTHR11252 PTHR11252:SF0 SM00316 SM00322 SSF46915 SSF50249 SSF54211 SSF54791 SSF55666 TIGR03591 cd02393 cd04472 cd11364 mobidb-lite	36
Lj1g3v4753360.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: exosome complex component RRP45-like isoform X3 [Cicer arietinum] gi\|502122025\|ref\|XP_004497542.1\|	Domains G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR033100 PF01138 PF03725 PTHR11097 PTHR11097:SF14 SSF54211 SSF55666 cd11368 mobidb-lite	14
Lj2g3v0947360.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial-like [Cicer arietinum] gi\|502090489\|ref\|XP_004489245.1\|	Domains G3DSA:1.10.10.400 G3DSA:2.40.50.140 G3DSA:3.30.1370.10 G3DSA:3.30.230.70 IPR001247 IPR003029 IPR004088 IPR012162 IPR012340 IPR015847 IPR015848 IPR020568 IPR022967 IPR027408 MF_01595 PF00013 PF00575 PF01138 PF03725 PF03726 PS50084 PS50126 PTHR11252 PTHR11252:SF3 SM00316 SSF50249 SSF54211 SSF54791 SSF55666 TIGR03591 cd11363 cd11364 mobidb-lite	33
Lj4g3v0987840.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: exosome complex component RRP43-like [Glycine max] gi\|356526509\|ref\|XP_003531860.1\|	Domains IPR001247 IPR015847 IPR020568 IPR033196 PF01138 PF03725 PTHR11097 PTHR11097:SF9 SSF54211 SSF55666	10
LotjaGi1g1v0474000_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component; TAIR: AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein; Swiss-Prot: sp\|Q9LX74\|EXOS5_ARATH Exosome complex exonuclease RRP46 homolog; TrEMBL-Plants: tr\|I3SU44\|I3SU44_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0474000_LC	Domains G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR036345 PF01138 PF03725 PTHR11953 PTHR11953:SF1 SSF54211 SSF55666	12
LotjaGi1g1v0648200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polyribonucleotide nucleotidyltransferase; TAIR: AT3G03710.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp\|Q69LE7\|PNP1_ORYSJ Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic; TrEMBL-Plants: tr\|G7L1J6\|G7L1J6_MEDTR Polyribonucleotide nucleotidyltransferase; Found in the gene: LotjaGi1g1v0648200	Domains G3DSA:2.40.50.140 G3DSA:3.30.230.70 IPR001247 IPR003029 IPR004087 IPR004088 IPR012162 IPR012340 IPR015847 IPR020568 IPR022967 IPR027408 IPR036345 IPR036456 IPR036612 MF_01595 PF00013 PF00575 PF01138 PF03725 PS50084 PS50126 PTHR11252 PTHR11252:SF0 SM00316 SM00322 SSF46915 SSF50249 SSF54211 SSF54791 SSF55666 TIGR03591 cd02393 cd04472 cd11364 mobidb-lite	36
LotjaGi1g1v0741200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component; TAIR: AT3G60500.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp\|Q9M209\|CER7_ARATH Exosome complex component RRP45B; TrEMBL-Plants: tr\|G7IP72\|G7IP72_MEDTR Exosome complex exonuclease RRP41; Found in the gene: LotjaGi1g1v0741200	Domains G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR033100 IPR036345 PF01138 PF03725 PTHR11097 PTHR11097:SF26 SSF54211 SSF55666 cd11368 mobidb-lite	15
LotjaGi1g1v0789600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ribonuclease PH; TAIR: AT3G61620.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp\|Q9SP08\|RRP41_ARATH Exosome complex component RRP41 homolog; TrEMBL-Plants: tr\|G7L401\|G7L401_MEDTR Exosome complex exonuclease RRP41; Found in the gene: LotjaGi1g1v0789600	Domains G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR036345 PF01138 PF03725 PTHR11953 PTHR11953:SF0 SSF54211 SSF55666 cd11370	13
LotjaGi2g1v0066400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component; TAIR: AT3G07750.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp\|Q15024\|EXOS7_HUMAN Exosome complex component RRP42; TrEMBL-Plants: tr\|I3T9E4\|I3T9E4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0066400	Domains Coil G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR036345 PF01138 PF03725 PTHR11097 PTHR11097:SF8 SSF54211 SSF55666 cd11367	14
LotjaGi2g1v0066400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component; TAIR: AT3G07750.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp\|Q15024\|EXOS7_HUMAN Exosome complex component RRP42; TrEMBL-Plants: tr\|I3T9E4\|I3T9E4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0066400	Domains Coil G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR036345 PF01138 PF03725 PTHR11097 PTHR11097:SF8 SSF54211 SSF55666 cd11367	14
LotjaGi2g1v0243700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polyribonucleotide nucleotidyltransferase; TAIR: AT5G14580.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp\|Q9S7G6\|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial; TrEMBL-Plants: tr\|V7C0V9\|V7C0V9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0243700	Domains G3DSA:2.40.50.140 G3DSA:3.30.1370.10 G3DSA:3.30.230.70 IPR001247 IPR003029 IPR004088 IPR012162 IPR012340 IPR015847 IPR015848 IPR020568 IPR022967 IPR027408 IPR036345 IPR036612 PF00013 PF00575 PF01138 PF03725 PF03726 PS50084 PS50126 PTHR11252 PTHR11252:SF11 SM00316 SSF50249 SSF54211 SSF54791 SSF55666 TIGR03591 cd11364 mobidb-lite	32
LotjaGi2g1v0243700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polyribonucleotide nucleotidyltransferase; TAIR: AT5G14580.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp\|Q9S7G6\|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial; TrEMBL-Plants: tr\|V7C0V9\|V7C0V9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0243700	Domains G3DSA:2.40.50.140 G3DSA:3.30.1370.10 G3DSA:3.30.230.70 IPR001247 IPR003029 IPR004088 IPR012162 IPR012340 IPR015847 IPR015848 IPR020568 IPR022967 IPR027408 IPR036345 IPR036612 MF_01595 PF00013 PF00575 PF01138 PF03725 PF03726 PS50084 PS50126 PTHR11252 PTHR11252:SF11 SM00316 SSF50249 SSF54211 SSF54791 SSF55666 TIGR03591 cd04472 cd11363 cd11364 mobidb-lite	35
LotjaGi2g1v0358300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component; TAIR: AT4G27490.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp\|A2RVK7\|RP41L_ARATH Exosome complex component RRP41-like; TrEMBL-Plants: tr\|I3SC00\|I3SC00_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0358300	Domains G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR036345 PF01138 PF03725 PTHR11953 PTHR11953:SF2 SSF54211 SSF55666 cd11371 mobidb-lite	14
LotjaGi2g1v0358300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component; TAIR: AT4G27490.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp\|A2RVK7\|RP41L_ARATH Exosome complex component RRP41-like; TrEMBL-Plants: tr\|I3SC00\|I3SC00_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0358300	Domains G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR036345 PF01138 PF03725 PTHR11953 PTHR11953:SF2 SSF54211 SSF55666 cd11371 mobidb-lite	14
LotjaGi2g1v0358300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polyribonucleotide nucleotidyltransferase; TAIR: AT4G27490.7 3'-5'-exoribonuclease family protein; Swiss-Prot: sp\|A2RVK7\|RP41L_ARATH Exosome complex component RRP41-like; TrEMBL-Plants: tr\|I3SC00\|I3SC00_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0358300	Domains G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR036345 PF01138 PF03725 PTHR11953 PTHR11953:SF2 SSF54211 SSF55666 cd11371	13
LotjaGi4g1v0121200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp\|Q2KHU3\|EXOS8_BOVIN Exosome complex component RRP43; TrEMBL-Plants: tr\|A0A151QPU2\|A0A151QPU2_CAJCA Exosome complex exonuclease RRP43; Found in the gene: LotjaGi4g1v0121200	Domains G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR033196 IPR036345 PF01138 PF03725 PTHR11097 PTHR11097:SF9 SSF54211 SSF55666	13
LotjaGi4g1v0121200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp\|Q2KHU3\|EXOS8_BOVIN Exosome complex component RRP43; TrEMBL-Plants: tr\|A0A151QPU2\|A0A151QPU2_CAJCA Exosome complex exonuclease RRP43; Found in the gene: LotjaGi4g1v0121200	Domains G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR033196 IPR036345 PF01138 PF03725 PTHR11097 PTHR11097:SF9 SSF54211 SSF55666	13
LotjaGi4g1v0121200.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp\|Q2KHU3\|EXOS8_BOVIN Exosome complex component RRP43; TrEMBL-Plants: tr\|A0A151QPU2\|A0A151QPU2_CAJCA Exosome complex exonuclease RRP43; Found in the gene: LotjaGi4g1v0121200	Domains G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR033196 IPR036345 PF01138 PF03725 PTHR11097 PTHR11097:SF9 SSF54211 SSF55666	13
LotjaGi5g1v0053800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component; TAIR: AT3G07750.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp\|Q15024\|EXOS7_HUMAN Exosome complex component RRP42; TrEMBL-Plants: tr\|I3T9E4\|I3T9E4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0053800	Domains Coil G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR036345 PF01138 PF03725 PTHR11097 PTHR11097:SF8 SSF54211 SSF55666 cd11367	14
LotjaGi5g1v0053800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component; TAIR: AT3G07750.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp\|Q15024\|EXOS7_HUMAN Exosome complex component RRP42; TrEMBL-Plants: tr\|I3T9E4\|I3T9E4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0053800	Domains Coil G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR036345 PF01138 PF03725 PTHR11097 PTHR11097:SF8 SSF54211 SSF55666 cd11367	14
LotjaGi6g1v0013300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp\|Q96B26\|EXOS8_HUMAN Exosome complex component RRP43; TrEMBL-Plants: tr\|I1KWF8\|I1KWF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0013300	Domains G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR033196 IPR036345 PF01138 PF03725 PTHR11097 PTHR11097:SF9 SSF54211 SSF55666 cd11369	14
LotjaGi6g1v0013300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp\|Q2KHU3\|EXOS8_BOVIN Exosome complex component RRP43; TrEMBL-Plants: tr\|A0A151QPU2\|A0A151QPU2_CAJCA Exosome complex exonuclease RRP43; Found in the gene: LotjaGi6g1v0013300	Domains Coil G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR033196 IPR036345 PF01138 PF03725 PTHR11097 PTHR11097:SF9 SSF54211 SSF55666	14
LotjaGi6g1v0013300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp\|Q96B26\|EXOS8_HUMAN Exosome complex component RRP43; TrEMBL-Plants: tr\|I1MA04\|I1MA04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0013300	Domains G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR033196 IPR036345 PF01138 PF03725 PTHR11097 PTHR11097:SF9 SSF54211 SSF55666 cd11369	14
LotjaGi6g1v0013300.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp\|Q96B26\|EXOS8_HUMAN Exosome complex component RRP43; TrEMBL-Plants: tr\|I1KWF8\|I1KWF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0013300	Domains G3DSA:3.30.230.70 IPR001247 IPR015847 IPR020568 IPR027408 IPR033196 IPR036345 PF01138 PF03725 PTHR11097 PTHR11097:SF9 SSF54211 SSF55666 cd11369	14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd11369	CDD	1	4.00