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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0170100 |
| Transcript ID | LotjaGi2g1v0170100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin-like protein; TAIR: AT1G73190.1 Aquaporin-like superfamily protein; Swiss-Prot: sp|P23958|TIPA_PHAVU Probable aquaporin TIP-type alpha; TrEMBL-Plants: tr|A0A0R0I960|A0A0R0I960_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0170100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:58545955..58549119) extracted from Lotus japonicus Gifu genome v1.2.
ATTGAAAAAACACTGACTTTAAAAATACACAAGTCAGACAATTAAGCCTGTGGAACCGCAACCGCCTAGTGGCTAGACTT TGAATTTTGTCTTTGTTGAGAAAATGAGGATCAACATTAAACACTGGTGAATGTGGATATAGGTGCATATGTATAGGACA TGAGCAACCAACACATATATATGAGTATGACACTACGTGCCCATCATTTAGCATCTTACAAATCCAGGTGTCTCACCTTA GTCCAACTCCTATTTTCCTCATATAAGCACTTCCACTTCACTTGTAAGCCATGCAAAAGACCCTCTATCACCCTACCTTC AAAACTCCCTTATTCAGTTTCATTCACACCAAAGAACAAGCACCTTTTCTGGAACAATAAAACTCCAAACTCTCAAACTC AGTGGATTAAAAACATTCATTTTTACCTGGGACAATCTTAGGTGCTAGTGTTAGAAATGTCAACCCGTAGATATGCTTTT GGAAGGGCTGATGAGGCTACCCACCCAGACTCCATAAGAGCCAGCATAGCTGAATTTGTCTCCACTTTCATCTTTGTCTT TGCTGGAGAAGGCTCTGGCCTTGCTTTGGGTTTGTATAATATATACACACTCAAAATCTGTCCTTACATGTTTAACAAGA GATAATGGTTTTGAAGTTTCTATTATTTATCTGGGCTGACTAAGAATGAATTTAGGATAAAATTATAAATTTAACATATG ACTGGTTTATGTACCATGGTACATGTTTAATTTCTTTCTTGATTTTTGTTAAGCAAGTTTTTGAATTGGGAGGGTTAGTC CCATCAGGATTTAGATGTTTTCGGTTCAAACAGGAATGTGATTTTTTGAGTATACCTCTTTGGAAAAGAATACTCATAAT CTTGTGTCTTTGTGATTATGTTAATCTAAGCATCTAACACATGCATGCATGTAATGACTATGCTAGTGTTTTTGGTAAAT GAGTAGTGATGGTGATTTTGTGTGCTTTTTCTATATTGCAGTTAAGATTTACAGGGATTCAGCTTTCTCAGCTGGTGAAT TGTTGGCAATTGCACTTGCACATGCATTTGCTCTGTTTGCTGCTGTGTCTTCCAGCATGCATGTATCCGGTGGCCATGTC AATCCGGCAGTGACATTCGGTGCTCTCATAGGTGGAAGAATCTCTGTTGTTCGTGCCATCTACTATTGGATTGCTCAACT TCTAGGTGCTATAGTGGCTGCCCTCTTGCTCAGGCTTTGCACTAATAACATGGTAAATCTTATTTTTATGTGCTAACTCC AAAACTGGATAATAGTAGGATGGTAAAAAAAAGGAAAGTAATTTATAAGGATCCGCATACTGCAGACATCCAATAGATAC TCAGAGAGCGGAGAAGGAAGATAATCATGTGATATATGATAGGGGGGAGAGATAGAGAGAGATATGAGGTGTTTGTTAGA TATCAACACTATTTTATGTTTTCGGTTAAGTTTTATATTGTAAAATTAAGGCAAAAGTCAAGGCACACATAATAAGGGAC TCAAACCTAGAAAAGCACCATAACATAGCATAAGATACTCGTAACAGCTAGCATGCTCTAAAACCACACACCGGTGACAG TAATCCTAACAAGCAAAAAACAAAAAAATCACCCATAAACATGAAAATAAAAATATAAAGGTTAACTGATTGTTCCAAAT AGCATATTACAAATTTGCTCATTTCTCTTAGAAAGAGATAATCCCTTAGAAAGAGATAAGCTGGTGTTATGTAGCTATGC TAGTGCGTTATTGAAACAAATTATCATAACTATGCCTTGCATTCTATCATTAAGAGGGGATAGTCTAAAGATGGGTGGTG GTGGCACTATTTGAATAGTTGAGTATATCATTAATATTATAGCAATTAACTTTCAATGAAAACTGATTTGGTGTTGTGGT TTTAATGCAGAGACCAGCAGGGTTTCATGTAGGACAGGGTATTGGCGCTTTCCACGGGCTTATACTTGAGATTATCATGA CATTTGGGCTGATGTACACAGTATATGCTACTGCAATTGATCCCAAAAGGGGTAGTATTGGGGCCATTGCACCTTTGGCA ATTGGACTCATAGTTGGGGCAAACATCCTTGTTGGTGGACCATTTGATGGAGCATGCATGAACCCAGCTCTGGCTTTTGG GCCTTCCTTGGTGGGCTGGAGATGGCACTACCACTGGGTCTTCTGGTTGGGCCCTTTTCTTGGAGCTGCACTGGCAGCAC TCATATATGAGTATCTTGTGATCCCAACAGAGCCCTCACATGCACACCAGCCTTTGGCTCCTGAAGATTATTAGTTTAGC CTCTGTTTATCAAAATAAAAGTGTTTGGTTCTGTTTATCAAAATATTTAAGGTTATGATTATGGTGTGTTGTTTTGTTTA TTCCATCTTTATGCTTTGGTTGCCACTGAACTCTCATGTATGGGTCTCAACTCCCAAACCTAGTTCAGTCAGTGTGTTGT CTTTCCTACACATAGTGAATAAAATGTGAACACTATATTGTATAAATATTTTGCAAGTTACACTTACTTAATAGGTGCCA CTCGCATTGACTGTTTCAAGTTCAATCGTTTGGCCTTTGGTCTTCACCACACTGGCTCGCATTGACTGTTTCAAGTTCGA TCATTTGGCCTTTGGTCTTCACCACACTGGCTCGGTTGGAATTGTGGGGGCGATTTAGTAAAAACAAAAGCTACACCTGC ATGAAAGAGATGACTTTGTTTGCACATGAATCTTGTGTGTGTTTTTTACATAATAATGGACCCATTGCTTAATTCAGTTT TAAAGTCGTATTGGTTTACAACTTTCACCTGGATTGTATTCCAATAAAAAACAACAAATTAGAGGGACATTTCTTTCCTC TATATTTTTTGAATAATCAATAAATCAAATTTTAGTTAAAAGTCAATTTTGTCAATATTATACATCTATACTTTTGTTTG CTTGTAAAATCTGGCAACCCAAGGAGCAAGTTCAGTATTATGAGGTGTCCTGGGGTTGGCAGAGTAATAATCACACCAAT AGCAAGGGTTGAGTCTATCAGCAAATTTTTTGTCAGCATAAAGACAAAAAGGTAGCCAATCTTCACCTCCATTCATTCTT CTTTTCCTTTCCCTTGGATAAGCTAAAGGTGCTTGTACATACCTG
CDS sequence (LotjaGi2g1v0170100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACCCGTAGATATGCTTTTGGAAGGGCTGATGAGGCTACCCACCCAGACTCCATAAGAGCCAGCATAGCTGAATT TGTCTCCACTTTCATCTTTGTCTTTGCTGGAGAAGGCTCTGGCCTTGCTTTGGTTAAGATTTACAGGGATTCAGCTTTCT CAGCTGGTGAATTGTTGGCAATTGCACTTGCACATGCATTTGCTCTGTTTGCTGCTGTGTCTTCCAGCATGCATGTATCC GGTGGCCATGTCAATCCGGCAGTGACATTCGGTGCTCTCATAGGTGGAAGAATCTCTGTTGTTCGTGCCATCTACTATTG GATTGCTCAACTTCTAGGTGCTATAGTGGCTGCCCTCTTGCTCAGGCTTTGCACTAATAACATGAGACCAGCAGGGTTTC ATGTAGGACAGGGTATTGGCGCTTTCCACGGGCTTATACTTGAGATTATCATGACATTTGGGCTGATGTACACAGTATAT GCTACTGCAATTGATCCCAAAAGGGGTAGTATTGGGGCCATTGCACCTTTGGCAATTGGACTCATAGTTGGGGCAAACAT CCTTGTTGGTGGACCATTTGATGGAGCATGCATGAACCCAGCTCTGGCTTTTGGGCCTTCCTTGGTGGGCTGGAGATGGC ACTACCACTGGGTCTTCTGGTTGGGCCCTTTTCTTGGAGCTGCACTGGCAGCACTCATATATGAGTATCTTGTGATCCCA ACAGAGCCCTCACATGCACACCAGCCTTTGGCTCCTGAAGATTATTAG
Protein sequence (LotjaGi2g1v0170100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTRRYAFGRADEATHPDSIRASIAEFVSTFIFVFAGEGSGLALVKIYRDSAFSAGELLAIALAHAFALFAAVSSSMHVS GGHVNPAVTFGALIGGRISVVRAIYYWIAQLLGAIVAALLLRLCTNNMRPAGFHVGQGIGAFHGLILEIIMTFGLMYTVY ATAIDPKRGSIGAIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWRWHYHWVFWLGPFLGAALAALIYEYLVIP TEPSHAHQPLAPEDY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 255 | 255 | 2.9E-142 | ||
| PANTHER | 1 | 255 | 255 | 2.9E-142 | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| Gene3D | 4 | 251 | 248 | 1.8E-84 | ||
| SUPERFAMILY | 13 | 246 | 234 | 2.09E-69 | ||
| Pfam | 14 | 234 | 221 | 1.4E-74 | ||
| PRINTS | 21 | 40 | 20 | 9.1E-53 | ||
| CDD | 21 | 237 | 217 | 1.02218E-69 | ||
| TMHMM | 23 | 45 | 23 | - | – | |
| Phobius | 24 | 45 | 22 | - | – | |
| TIGRFAM | 25 | 234 | 210 | 3.0E-57 | ||
| Phobius | 46 | 50 | 5 | - | – | |
| Phobius | 51 | 73 | 23 | - | – | |
| TMHMM | 60 | 82 | 23 | - | – | |
| PRINTS | 65 | 89 | 25 | 9.1E-53 | ||
| Phobius | 74 | 102 | 29 | - | – | |
| ProSitePatterns | 83 | 91 | 9 | - | ||
| PRINTS | 102 | 121 | 20 | 9.1E-53 | ||
| TMHMM | 103 | 125 | 23 | - | – | |
| Phobius | 103 | 121 | 19 | - | – | |
| Phobius | 122 | 140 | 19 | - | – | |
| TMHMM | 140 | 162 | 23 | - | – | |
| Phobius | 141 | 160 | 20 | - | – | |
| PRINTS | 147 | 165 | 19 | 9.1E-53 | ||
| Phobius | 161 | 171 | 11 | - | – | |
| TMHMM | 169 | 191 | 23 | - | – | |
| Phobius | 172 | 193 | 22 | - | – | |
| PRINTS | 180 | 202 | 23 | 9.1E-53 | ||
| Phobius | 194 | 212 | 19 | - | – | |
| Phobius | 213 | 234 | 22 | - | – | |
| TMHMM | 217 | 239 | 23 | - | – | |
| PRINTS | 217 | 237 | 21 | 9.1E-53 | ||
| Phobius | 235 | 255 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0170100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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