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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR022357
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 85 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.849s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0065209.1
n.a. aquaporin 2 [Samanea saman] gi|3158476|gb|AAC17529.1| chr0 22655602 22658678 +
2 domain predictions
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Lj0g3v0085699.1
n.a. PREDICTED: nodulin-26-like [Glycine max] gi|356555459|ref|XP_003546049.1| chr0 34364914 34365939 +
2 domain predictions
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Lj0g3v0187079.1
n.a. PREDICTED: probable aquaporin PIP1-2-like [Glycine max] gi|356568060|ref|XP_003552231.1| chr0 91253911 91255854 +
2 domain predictions
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Lj0g3v0235549.1
n.a. aquaporin PIP2-7 [Zea mays] gi|162457846|ref|NP_001105639.1| chr0 122080388 122082977 +
2 domain predictions
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Lj0g3v0265729.1
n.a. PREDICTED: nodulin-26-like [Glycine max] gi|356555459|ref|XP_003546049.1| chr0 137657171 137659740 -
2 domain predictions
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Lj0g3v0265739.1
n.a. PREDICTED: aquaporin NIP1-2-like [Cicer arietinum] gi|502078433|ref|XP_004485943.1| chr0 137660891 137661843 -
2 domain predictions
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Lj0g3v0265769.1
n.a. PREDICTED: nodulin-26-like [Glycine max] gi|356555459|ref|XP_003546049.1| chr0 137665881 137667729 -
2 domain predictions
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Lj0g3v0265799.1
n.a. PREDICTED: nodulin-26-like [Glycine max] gi|356555459|ref|XP_003546049.1| chr0 137680060 137683050 -
2 domain predictions
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Lj0g3v0361559.1
n.a. PREDICTED: aquaporin NIP2-1-like [Cicer arietinum] gi|502101035|ref|XP_004491801.1| chr0 190453065 190456413 -
2 domain predictions
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Lj0g3v0361819.1
n.a. PREDICTED: probable aquaporin TIP-type alpha-like [Glycine max] gi|356535292|ref|XP_003536182.1| chr0 190662335 190663411 +
2 domain predictions
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Lj1g3v3330520.1
n.a. PREDICTED: aquaporin PIP2-7 [Glycine max] gi|356507734|ref|XP_003522619.1| chr1 38144283 38145940 -
2 domain predictions
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Lj1g3v3330530.1
n.a. PREDICTED: aquaporin PIP2-7 [Glycine max] gi|356507734|ref|XP_003522619.1| chr1 38144554 38145940 -
2 domain predictions
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Lj1g3v4579510.1
n.a. Aquaporin PIP2-1 [Medicago truncatula] gi|357510677|ref|XP_003625627.1| chr1 54638198 54639658 -
2 domain predictions
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Lj1g3v4668060.1
n.a. water-selective transport intrinsic membrane protein 1 [Lotus japonicus] gi|9082285|gb|AAF82790.1|AF275315_1 chr1 55369922 55371091 -
2 domain predictions
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Lj1g3v4668070.1
n.a. n.a. chr1 55369936 55371487 -
2 domain predictions
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Lj2g3v2001440.1
n.a. PREDICTED: probable aquaporin TIP2-2-like [Cicer arietinum] gi|502160290|ref|XP_004511697.1| chr2 29926432 29927776 -
2 domain predictions
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Lj2g3v2017710.1
n.a. PREDICTED: probable aquaporin PIP1-4-like [Glycine max] gi|356497240|ref|XP_003517470.1| chr2 30988706 30990443 +
2 domain predictions
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Lj2g3v2703390.1
n.a. Aquaporin protein PIP11 [Medicago truncatula] gi|357461163|ref|XP_003600863.1| chr2 36227945 36229790 -
2 domain predictions
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Lj2g3v2704410.1
n.a. Aquaporin PIP11 [Medicago truncatula] gi|357492595|ref|XP_003616586.1| chr2 36238525 36240600 -
2 domain predictions
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Lj2g3v2704420.1
n.a. PREDICTED: probable aquaporin PIP-type 7a-like [Glycine max] gi|356501133|ref|XP_003519383.1| chr2 36239163 36240159 -
2 domain predictions
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Lj3g3v0014420.1
n.a. major intrinsic protein NIP6;1 [Lotus japonicus] gi|162568625|gb|ABY19374.1| chr3 309106 315063 +
2 domain predictions
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Lj3g3v0270530.1
n.a. Aquaporin [Medicago truncatula] gi|357454843|ref|XP_003597702.1| chr3 1594810 1596972 -
2 domain predictions
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Lj3g3v3085600.1
n.a. PREDICTED: aquaporin PIP2-7-like [Glycine max] gi|356539376|ref|XP_003538174.1| chr3 38647985 38651155 +
2 domain predictions
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Lj3g3v3155110.1
n.a. PREDICTED: LOW QUALITY PROTEIN: aquaporin TIP1-1-like [Glycine max] gi|356542491|ref|XP_003539700.1| chr3 39127482 39129080 +
2 domain predictions
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Lj4g3v2618550.1
n.a. Aquaporin NIP1-2 [Medicago truncatula] gi|357519149|ref|XP_003629863.1| chr4 35639675 35642177 +
2 domain predictions
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Lj4g3v2963480.1
n.a. PREDICTED: probable aquaporin PIP1-2-like [Cicer arietinum] gi|502139259|ref|XP_004503705.1| chr4 39229308 39230946 +
2 domain predictions
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Lj5g3v1913870.1
n.a. major intrinsic protein NIP5;1 [Lotus japonicus] gi|162568623|gb|ABY19373.1| chr5 27100344 27107396 +
2 domain predictions
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Lj6g3v1966960.1
n.a. PREDICTED: aquaporin NIP1-2-like [Cicer arietinum] gi|502078433|ref|XP_004485943.1| chr6 22715001 22716390 -
2 domain predictions
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Lj6g3v1966970.1
n.a. PREDICTED: nodulin-26-like [Glycine max] gi|356555459|ref|XP_003546049.1| chr6 22717280 22720527 -
2 domain predictions
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Lj6g3v1967000.1
n.a. PREDICTED: nodulin-26-like [Glycine max] gi|356555459|ref|XP_003546049.1| chr6 22720652 22724824 -
2 domain predictions
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Lj6g3v1967010.1
n.a. PREDICTED: nodulin-26-like [Glycine max] gi|356555459|ref|XP_003546049.1| chr6 22727485 22731458 -
2 domain predictions
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Lj6g3v1967030.1
n.a. PREDICTED: nodulin-26-like [Glycine max] gi|356555459|ref|XP_003546049.1| chr6 22737289 22741204 -
2 domain predictions
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LotjaGi1g1v0049700.1
n.a. Aquaporin; TAIR: AT4G18910.1 NOD26-like intrinsic protein 1;2; Swiss-Prot: sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2; TrEMBL-Plants: tr|I3SMG3|I3SMG3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0049700 LjG1.1_chr1 6900952 6902764 +
2 domain predictions
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LotjaGi1g1v0050800.1
n.a. Aquaporin; TAIR: AT4G18910.1 NOD26-like intrinsic protein 1;2; Swiss-Prot: sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2; TrEMBL-Plants: tr|I3SMG3|I3SMG3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0050800 LjG1.1_chr1 7239886 7241841 -
2 domain predictions
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LotjaGi1g1v0050800.2
n.a. Aquaporin; TAIR: AT4G18910.1 NOD26-like intrinsic protein 1;2; Swiss-Prot: sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2; TrEMBL-Plants: tr|I1MEW7|I1MEW7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0050800 LjG1.1_chr1 7239955 7241651 -
2 domain predictions
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LotjaGi1g1v0080000.1
n.a. Aquaporin; TAIR: AT4G00430.1 plasma membrane intrinsic protein 1;4; Swiss-Prot: sp|P25794|PIP2_PEA Probable aquaporin PIP-type 7a; TrEMBL-Plants: tr|Q946J9|Q946J9_MEDTR Aquaporin protein PIP1;1; Found in the gene: LotjaGi1g1v0080000 LjG1.1_chr1 11545327 11548376 +
2 domain predictions
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LotjaGi1g1v0080000.2
n.a. Aquaporin; TAIR: AT4G00430.1 plasma membrane intrinsic protein 1;4; Swiss-Prot: sp|P25794|PIP2_PEA Probable aquaporin PIP-type 7a; TrEMBL-Plants: tr|Q946J9|Q946J9_MEDTR Aquaporin protein PIP1;1; Found in the gene: LotjaGi1g1v0080000 LjG1.1_chr1 11545670 11546977 +
2 domain predictions
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LotjaGi1g1v0080000.3
n.a. Aquaporin; TAIR: AT4G00430.1 plasma membrane intrinsic protein 1;4; Swiss-Prot: sp|P25794|PIP2_PEA Probable aquaporin PIP-type 7a; TrEMBL-Plants: tr|Q946J9|Q946J9_MEDTR Aquaporin protein PIP1;1; Found in the gene: LotjaGi1g1v0080000 LjG1.1_chr1 11545670 11547097 +
2 domain predictions
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LotjaGi1g1v0145800.1
n.a. Aquaporin; TAIR: AT1G31885.1 NOD26-like intrinsic protein 3;1; Swiss-Prot: sp|P08995|NO26_SOYBN Nodulin-26; TrEMBL-Plants: tr|K7M7N1|K7M7N1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0145800 LjG1.1_chr1 24690803 24700024 +
2 domain predictions
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LotjaGi1g1v0503000.1
n.a. Aquaporin-1; TAIR: AT5G37820.2 NOD26-like intrinsic protein 4;2; Swiss-Prot: sp|Q19KC1|NIP21_MAIZE Aquaporin NIP2-1; TrEMBL-Plants: tr|A0A1J7GXT1|A0A1J7GXT1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0503000 LjG1.1_chr1 102069155 102073181 -
2 domain predictions
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LotjaGi1g1v0534100.1
n.a. Aquaporin; TAIR: AT4G01470.1 tonoplast intrinsic protein 1;3; Swiss-Prot: sp|O82598|TIP13_ARATH Aquaporin TIP1-3; TrEMBL-Plants: tr|I1JDR9|I1JDR9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0534100 LjG1.1_chr1 106243669 106247708 +
2 domain predictions
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LotjaGi1g1v0534100.2
n.a. Aquaporin; TAIR: AT4G01470.1 tonoplast intrinsic protein 1;3; Swiss-Prot: sp|O82598|TIP13_ARATH Aquaporin TIP1-3; TrEMBL-Plants: tr|I1JDR9|I1JDR9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0534100 LjG1.1_chr1 106245691 106247424 +
2 domain predictions
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LotjaGi1g1v0534100.3
n.a. Aquaporin; TAIR: AT4G01470.1 tonoplast intrinsic protein 1;3; Swiss-Prot: sp|O82598|TIP13_ARATH Aquaporin TIP1-3; TrEMBL-Plants: tr|I1JDR9|I1JDR9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0534100 LjG1.1_chr1 106245691 106247497 +
2 domain predictions
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LotjaGi1g1v0558200.1
n.a. Aquaporin; TAIR: AT4G35100.1 plasma membrane intrinsic protein 3; Swiss-Prot: sp|P93004|PIP27_ARATH Aquaporin PIP2-7; TrEMBL-Plants: tr|I6XCT2|I6XCT2_LINUS Putative aquaporin PIP2-8; Found in the gene: LotjaGi1g1v0558200 LjG1.1_chr1 109046299 109054582 -
2 domain predictions
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LotjaGi1g1v0558200.2
n.a. Aquaporin; TAIR: AT4G35100.1 plasma membrane intrinsic protein 3; Swiss-Prot: sp|P93004|PIP27_ARATH Aquaporin PIP2-7; TrEMBL-Plants: tr|A0A0L9UIG5|A0A0L9UIG5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0558200 LjG1.1_chr1 109046852 109047811 -
2 domain predictions
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LotjaGi1g1v0685800.1
n.a. Aquaporin; TAIR: AT2G36830.1 gamma tonoplast intrinsic protein; Swiss-Prot: sp|Q9FY14|TIP1_MEDTR Probable aquaporin TIP-type; TrEMBL-Plants: tr|Q9LKJ6|Q9LKJ6_LOTJA Water-selective transport intrinsic membrane protein 1; Found in the gene: LotjaGi1g1v0685800 LjG1.1_chr1 125272155 125274840 +
2 domain predictions
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LotjaGi1g1v0691400.1
n.a. Aquaporin-like protein; TAIR: AT2G37170.2 plasma membrane intrinsic protein 2; Swiss-Prot: sp|Q6K215|PIP22_ORYSJ Probable aquaporin PIP2-2; TrEMBL-Plants: tr|Q2HV44|Q2HV44_MEDTR Major intrinsic protein; Found in the gene: LotjaGi1g1v0691400 LjG1.1_chr1 125966519 125968361 +
2 domain predictions
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LotjaGi2g1v0170100.1
n.a. Aquaporin-like protein; TAIR: AT1G73190.1 Aquaporin-like superfamily protein; Swiss-Prot: sp|P23958|TIPA_PHAVU Probable aquaporin TIP-type alpha; TrEMBL-Plants: tr|A0A0R0I960|A0A0R0I960_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0170100 LjG1.1_chr2 58545955 58549119 -
2 domain predictions
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LotjaGi2g1v0359700.1
n.a. Aquaporin; TAIR: AT4G35100.1 plasma membrane intrinsic protein 3; Swiss-Prot: sp|Q9ATM4|PIP27_MAIZE Aquaporin PIP2-7; TrEMBL-Plants: tr|V7AJI3|V7AJI3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0359700 LjG1.1_chr2 85704246 85708258 +
2 domain predictions
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LotjaGi2g1v0369000.1
n.a. Aquaporin; TAIR: AT4G01470.1 tonoplast intrinsic protein 1;3; Swiss-Prot: sp|O82598|TIP13_ARATH Aquaporin TIP1-3; TrEMBL-Plants: tr|I3S2G4|I3S2G4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0369000 LjG1.1_chr2 86644321 86648135 +
2 domain predictions
 –