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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0171600 |
| Transcript ID | LotjaGi2g1v0171600.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT1G72900.1 Toll-Interleukin-Resistance (TIR) domain-containing protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|K7MIV1|K7MIV1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0171600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:58713133..58714571) extracted from Lotus japonicus Gifu genome v1.2.
TGTATTTGGTTGCTCTGTTCTCATGACATATACTTATGGTTGCACACACCATTCATATTCCACACTTATCATTCCAAGCT TTCTTTCTCATGGCTCTGCTACCATCATCATCCTCCTCCTTCTCCTCCTTCACCTATGCATTCACTTACGATGTATTCCT CAGCTTCAGGGGTTCTGATACTCGCTTTGGTTTTACTGGCAATCTCCACAAAACTCTCTCAGATAAGGGAATCCACACCT TCATTGATGATAAGGACCTTAAGAGAGGAGATGAAATCACACCCGCACTTATCAAGGCCATTCAAGAGTCGAGGATTGCC ATCCCTATCTTCTCTGTGAACTATGCTTCTTCTTCATTTTGCCTGGATGAACTTGTCACAATCATGGAGTGTGTCAAGGC AAAAGGTCGGTTGGTTCTTCCGGTTTTCTATGATGTGGATCCTTCTCATGTCAGACATCAAAGTGGGACTTATGCTGAAG CTATGGACAAGCATGAGAAGAGGTTTAAGGATAGCAAGGAAAAGTTGAAGGACAACATGGAGAGGTTGCAAAAATGGAAG ATGGCTCTTAACCAAGCCGCTAATTTGTCAGGCTCTCATTACAAACCCAGGTACCCCACTTCACCCTCTTTTTTTCTTCT TGTGTTTCTTTACAACTTCACAGACATGATAGAATTTATTGTTATTATTTCACACAAATTTCACTTCTCTTATTGGGCAG TGATGGATCTTATGAACACGACTTTATCGGAAAAATTGTTAAAGAGGTCTTAAGAAAGATTAATCGTGTAGCTTTACATA TTGCTGATTACCCCGTTGGACTAGAATCCCAAGTGGAAGAAGTGCTTTTTCTTATGGATGTTGGGTCTGATGATAAAGTT CACATGGTAGGAATTCATGGAATAGGAGGGATTGGTAAAACAACACTTGCTCTAGCAGTTTACAATTCCATTGCTGACCA TTTTGAAGGTTTATGTTTTTTAGAAAATGTTCGAGAAAATTCAAACAAACATGGGTTACCACATCTCCAAAAGATATTTC TTGTGGATGTACTTGAAGAGAAGGAAATTGAGATAACAAGTGTCGGCAAAGGAATTTCAATGATACAACGTAGGCTCCAG CAAAAAAGGGTTCTTTTGATTCTAGATGATGTTAACAAGATGGAGCAGCTACAAGGCATTATTGGAAGGTCTGATTGGTT TGGTCGTGGTAGTAGAGTCATCATCACGACTCGGGATAAACACTTGCTAGCATTACACGGGGTTGAAAGCACATATGAAG TGGAAACGTTGAACGAGAATGATGCTGTTAAATTGCTCAGATGGAAAGCTTTTAAAGAGGACAAGGTTAGACCAAACTAT GAAGGCATGTTAAGCCGTGCATTGGCTTATGCTTCCGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCTAACCTGTATG
CDS sequence (LotjaGi2g1v0171600.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCACACACCATTCATATTCCACACTTATCATTCCAAGCTTTCTTTCTCATGGCTCTGCTACCATCATCATCCTC CTCCTTCTCCTCCTTCACCTATGCATTCACTTACGATGTATTCCTCAGCTTCAGGGGTTCTGATACTCGCTTTGGTTTTA CTGGCAATCTCCACAAAACTCTCTCAGATAAGGGAATCCACACCTTCATTGATGATAAGGACCTTAAGAGAGGAGATGAA ATCACACCCGCACTTATCAAGGCCATTCAAGAGTCGAGGATTGCCATCCCTATCTTCTCTGTGAACTATGCTTCTTCTTC ATTTTGCCTGGATGAACTTGTCACAATCATGGAGTGTGTCAAGGCAAAAGGTCGGTTGGTTCTTCCGGTTTTCTATGATG TGGATCCTTCTCATGTCAGACATCAAAGTGGGACTTATGCTGAAGCTATGGACAAGCATGAGAAGAGGTTTAAGGATAGC AAGGAAAAGTTGAAGGACAACATGGAGAGGTTGCAAAAATGGAAGATGGCTCTTAACCAAGCCGCTAATTTGTCAGGCTC TCATTACAAACCCAGTGATGGATCTTATGAACACGACTTTATCGGAAAAATTGTTAAAGAGGTCTTAAGAAAGATTAATC GTGTAGCTTTACATATTGCTGATTACCCCGTTGGACTAGAATCCCAAGTGGAAGAAGTGCTTTTTCTTATGGATGTTGGG TCTGATGATAAAGTTCACATGAAAATGTTCGAGAAAATTCAAACAAACATGGGTTACCACATCTCCAAAAGATATTTCTT GTGGATGTACTTGAAGAGAAGGAAATTGAGATAA
Protein sequence (LotjaGi2g1v0171600.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAHTIHIPHLSFQAFFLMALLPSSSSSFSSFTYAFTYDVFLSFRGSDTRFGFTGNLHKTLSDKGIHTFIDDKDLKRGDE ITPALIKAIQESRIAIPIFSVNYASSSFCLDELVTIMECVKAKGRLVLPVFYDVDPSHVRHQSGTYAEAMDKHEKRFKDS KEKLKDNMERLQKWKMALNQAANLSGSHYKPSDGSYEHDFIGKIVKEVLRKINRVALHIADYPVGLESQVEEVLFLMDVG SDDKVHMKMFEKIQTNMGYHISKRYFLWMYLKRRKLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 30 | 30 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 11 | 22 | 12 | - | – | |
| Phobius | 23 | 30 | 8 | - | – | |
| SUPERFAMILY | 30 | 186 | 157 | 1.05E-41 | ||
| Phobius | 31 | 277 | 247 | - | – | |
| Gene3D | 33 | 219 | 187 | 7.8E-69 | ||
| PANTHER | 35 | 247 | 213 | 2.5E-89 | – | |
| PANTHER | 35 | 247 | 213 | 2.5E-89 | – | |
| ProSiteProfiles | 36 | 184 | 149 | 28.668 | ||
| SMART | 37 | 184 | 148 | 1.5E-44 | ||
| Pfam | 38 | 213 | 176 | 1.4E-43 | ||
| Coils | 150 | 181 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi2g1v0171600.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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