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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0185100 |
| Transcript ID | LotjaGi2g1v0185100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclic nucleotide gated channel protein; TAIR: AT3G17700.1 cyclic nucleotide-binding transporter 1; Swiss-Prot: sp|Q9LD37|CNG20_ARATH Probable cyclic nucleotide-gated ion channel 20, chloroplastic; TrEMBL-Plants: tr|A0A0B2QWW9|A0A0B2QWW9_GLYSO Putative cyclic nucleotide-gated ion channel 20, chloroplastic; Found in the gene: LotjaGi2g1v0185100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:61092647..61099889) extracted from Lotus japonicus Gifu genome v1.2.
AACAAAGGAGTGGAACTGGAAATCTTTTGCAACAGAGTATTTGTTTAACCGGAAACAAACCAGAGGAAAGCAACACAGGT TCGATTTACTCGGATAAAAACTATGATAGAAATAATGAAAAATTACTGAGATCTAGGCAAGTGGGAATTTGTAATGATCC TTGTTTCACCACATACGCAACTAACTCCAAGGCTTCTCACTCTCAGCTAGTTTATCCAAAAGCTTCGACTATTTCTGATT CGAAGGTGAAAATATACTATTCTTTCTAGCATTATGTTGATTAAGCTATTTCTTCTATATTCAAACTATTTCCTATCATT TGTGGACATTTGGTTATTTGATTCAACTATACTTATGCGACTTGCAAGTGTCATATAATGTTAATATGTTGAATGTTCAC AGTTCCATAATGCTTATGGAGATGCCAAAGGTTTTGCGAGAAATCATAATTCATTCTACTCTTCTTATGTTCCTGGAGTC ATGAACCCTCACACTAAGTTCATACAACAATGGAACAAGGTCTTGGCCATTTTTTGCTTGGTTGCAATTTTTGTGGATCC ACTATTTTTCTTCTTACTCTATGTGCAACGGGTATGGTTAGTTTCCTTTTATTTGTTTATAAGCTCTCGCAAGTTTTGGT TCTATTCATCTATATTTCCCTGCTACTTTTTGCAAATTTACTTTGCATTTTTCTTGTTTGTTGTATGCAGGATTTTAATT GTATTGCTATCAATTGGAGATTGACAAAAGCACTTGTTATAGTCAGAAGCATAAATGATTTTATATATTTCTTTAACATT CTTGTCCAGGTAATACAATAACTCCTATCCTTGGCACTTGGCAGCATGTTTTTACTTTTTAGTATAAAATGTGTCTTCTG TTTTTGTTTTAAGAAGGTTACTATTCTGATGAATGTATGCCTGAGTAGTTCTCTAGCACCAAAATAACTAATACAAGCCA AATGAAGTGTGATTACTTCTATTCAAAGACAATATTGTTATCCTATTGTCTAAGCATGCCTGTCATGACATCTGATTGAG TTACCCCCACTCATTTCATTACAGCCACACTCCATTCGAAACTATTTTCAACCTATTAATTGTGGAGTACATTTCCTCTT ATCCACAAACTCAAGAGTATTCATTTATTTAATTTTGGAGAAGAATATTTATTATTTACATAGCTTATACACTCTTAGAA TTTGGATTAGGTCTATCTCTACCGCAAAAGCTAGGTTAGAGGTGAGAAATGCTCTACCCTTTATAAGGATTTATTTGGCC GTATCTCTAGTCAATGTGAGACTTTTCAACACACCTTCTCACGCCCATGACTAGGCATTTGGAGCGTGGAATTTGTAGGA CTGAATATCTGCGGGTGACCTATATATGAGCGGTCTCCAATAAACGGATCTAGAATTGACTCTCATATCATCTTAGAATT GAGGTTAGCCCTAACTCTACCCCAAAAGCTATGCCAGAGGTGAGGACTGCTCTACCCTTTATAAGGAGTTATTTCATATC TCTAGTCAATGTGAAACTTCTCAACATATACATAGCAATTGAAGAAAATAAAAAATGAAGTGATTAGTTGGCATAGATGA TATATAGATTGGGTATAAGCTTATCTGCTGTATTATGTAGTGTTGTGTTGTGTCATGAATCAACTATTTCGAAAGCTTAG GTCAAAACACATGAATTTAAGTCCTGAATCTTAAATACGGTTGTTAAATTTAAGTCTGATTTGCTGCCTTTTCATCACTT AAGGCTTGAATAACTGAGTTGCCTTTTGCAGTTTAGGTTGGCTTATGTTTCTCCTGAGTCGAGGGTGGTTGGTGCTGGAG ATTTAGTTGACCATCCAAAGAAAATCGCTCTTCATTACCTGAAGGGTTATTTTTTTATTGACCTGTTTATTGTGTTTCCT CTTCCTCAGGTAAATTTCTTCCCATGTACACTTCTTCTCTATGCAAACTTTTTTGTTTTGCTACTGATTTAGCTCATATT AACTTAGTATACTTGTCATCCAATTTCGAATGTGGATTCTGAAGTATGCATGCCTAACAGCTGAATATAGTTTCTTGTTG ATGTTTTTCTTCATTTCCTTGAGATCATGTTAGTTGAAATCACACATATTCTGGTCAAATTCTACAGTAAGTGTTCTTGT CACAGTTAAATTATCAGTTATCTTGTATCTTTGACATAAAAGATAAACATGAAGATCGTTGGTGTTGCCATTTTGTTGAG ATAACCAATTTGGATTTATTGGGGTTTACATATGTGAGATTCAGTTTATAAGGTTTCCCTCCAAATACATGGATAAGGGT TTCTAATGGATTATATCTTCTGCTATGCGCAAGGTCCAGGGAGGGGCCGGACGGACCAACTTTGTGGATCTAGGAAATCT TTGCATTTTTGCAAGAGGTTGATTCCACAGCTCGAACCTGTGACCGCAGAGTCACATGGCAGCAACCCTACCATTGAGCA AAGGCTCAATGCGAGGAAGAAGCTGTTAGGGTTTTGTATGATAGGTTCCATCGTAATTATTGTTGTCCAAAGCTGATTCT TCTATATAGCTGTTATGTGCATGTACAATTTCCTTTAAATTATTTGTCTTCCTTCCAAATTCCTGCTTTCAAAAACCTTT TCCACTTGAACTGCACACATACCACAAAGGTTTCTCCTTTTAGAGTGTCATTCTGAGGAATAAAATATCTATGAACATGA AAATGTGCTTGAGAACATGTGCTTGTCATGACATATGTAGTGAAATATGTGCAGATAATGTTATTGTTGGTCCTACCAGA ATCCATGAGGGGAGCAAATTATGCTAAGAACCTTCTGCGTGCGGTGATCCTAGTGCAATACATTCCCAGATTATTCAGGT TTCTTCCTCTGCTAATTGGACAGTCCCCAACAGGATTCATATTTGAGTCGGCCTGGGCGAATTTCATTATTAATCTTCTC ATCTATATGCTTGCTAGCCATGTTGTTGGCTCTTGCTGGTACCTCTTTGGTCTGCAGGTGAGTGAAAATAGCATTTTATG CATGTTTTTCTAAATTTCTTAATATTATATATTAATTAATATGATATAAAATATATATTTAATTATCACCAGTTCTCGAA CTATTATAGCATGCAGTACCACTACATGTAGAAGTTGCTATGACCAATCAGGGTGGGTCCTTCCATAATGAAGTTTGTAT TTTTCTCTTCAATAGGTTAAATATCCTCTTAATCAGCCGGATAAGATCCAAATCTGTTTGTGGATGATATATTAATATAA TAATATGTAATGGGATTTATGGATCCTGCTTCGGTGCAGTGGATTTTCCTAAATTTCCTGCAATCACGACTTCGTAGCCA TGTGATCAAGATTAGACGGTTCAAATTTAAAATCGGATTTCAGGTGTAGCATCAATCTCTTTAAACTTAATTCGTCAGAT TTCGATCAGATGGTTATGAAGTCGTGACTGCAGTGAATTTAGGAAATTTTAATAGCTAGAAATCCAAATCCGAGATTTAT AGGCTAAATGAAGTGCTGTGTCAATATAATGGTAGTATGTTCTGTGAAATTTAAGCCCTCTAATTGTTACTGCAATTTTG GTAATGAAATTCAACCATCCAAGTTGTTATTTTCATTGGGTGCTTTGAATAAGAGGGATTCGATTAGAATCAGGAATTTG ATTCAGTAAACATTCAACTGACTAACTTTCTTCCTTTCTTTTCCAGAGGGTTAATCAGTGTTTTAGAAATGCCTGCCACA GTTCTAGTGTACCTGGATGCTTGAGATTCATTGATTGTGGGATTGACCATGATAGAAACTATCTCCAAGGCCCCAAATCA GAACAGTGGAACAACAATACAGATGCTATTGCTTGTTGGGGTTCCCCTTCCACTGGTTCTTTTGATTATGGGATCTATGG CAATGCTGTGCCTCTTACTACAAAAACAGACATGGTTACCAAATATGTATTTTCTCTATTTTGGGGATTCCAGGTATGCA TTTCATTTATTTTATAATTATGTTCTCCTTTCGTAGTAATTTGGTACATATTTATGGTTAGTGGGGATCAGATGAACTAG TGTAAAGCTTGATGCGCCCGCACCACTCTATTGGTCAATGTAGAAAGTTATTTTGATCAATTTAAAAATATAACAATCAT TATGTTAGTCTAGTATATTTCTAGGAAAATTGAAATGCAGAATTATGAATGAGCTTCTGATGTATAATGCTAGGCATGAG AACTTAAATAAAAGATTTAACTTTGGGATGAAGCTATTGATAGTACACTAGAAGAAAGAATATAAAAGAATTTTTGATAA GGTTATTTTCAACGGAACACTGACAAATCTCGAGTTCCAATGCACTTCGATCGAATCATTACTACCACTGTTAGTATTTC GGTTGGCTCCCTCCTCAATGTACATTCGCACGAATTCCGAGGCATAAAATCCAACAGATGTGATGGGTTGGATTGGACAA ACGGCTTGTTACATTCAACCAATATTAAAACAAACACACTTAGTCACATAGGAACTTCAACTGTTGTGACATGACTCCTT TTCAGATAATATCAGTTTTCCACCTAATAACCAGGGATCAACTACTAACAATTGTTAGATAATGCACATGAATGGTCTAA TATCTCTAACAATTATACAATATATGATTTTGCACAGCAAATCAGTACTCTGGCTGGTAATCTAACACCAAGCAATTTTG TGTGGGAAGTCCTTTTTACTATGGCCACCATTGGATTGGGACTCTTGCTATTTGCACTTCTCATTGGAAACATGCAGAAT TTTCTTCAAGGTCTTGGACGGAGGTAGAACTTATCCAATACTGAAACTTTTAAGTAAACTTTGATCATCAATGGTTATAG TGTTGTTATATGCTTGATATATTTACTTCCACCCCTCTTACAGGAGACAAGAAATGCAACTTAGACGACGTGATTTTGAG CAATGGATGAGATACAGACGATTACCCGAAGATCTAAGAAGGTAAAAAGCTTCTCTTATTCATTCTTTTCATGTATTTGA TTATTTCTTGATTCAAGCCATTGAGTGTTAACTCCCACTCCCCATCCCCTCCTTCAAACTCCTTTTTTGACAATGTATGT TAGAAGTTCCTGCTCCTAGACGCAAGGACTGTTTTGCATGATATGACTAGATCAAATAACTTCTGCAGGCTTATTTTAGA TTTTGAATAGGTAAAGGATAATTTAAAATTTCTTGTTACATGTATTTTTTCTTTCTGCAAATATGTCCATGTTTTTTATG GGGTAAAATTAAATATGATTAATGACTCGGGGTATTCTTAGCACACATAACGTGCATAATATGAAAAATAGCTGCTAAGA CCATCTTACTGGGGATCTTTTTAAATTAATCTCCTAGATCTAATAATGAAATTGATATAGCCAATGTACGTAATGAAGAG AAAACCCGGCTTTGCCTAAGTAAGAACTCGGCTTCGAGTCTTGTGAATGGAAAAACCCCCGCTGAGAGAGCTAGTTAGCC CCACCAGAATGTGGGTGATCCCAACTCAAAAGAGGATTGCCTTCCGAGGAGGATACTTGTATTAGACCAAAAAAATAAGA GCAATCTATAATATAGCATGAGTTTTATGAAATTGCATGTCTATTTTTTCTCATTTTTATCTAGGTATTATGTCATATGA AATATCAGATCAAGCACAACATATAAGTCATACATAATGTTTGTCATGCAGGAGAGTAAGGCAGGCTGAACGGTATACTT GGGCTGCGACACGGGGGGTGAATGAAGAAATGCTTATGGTGAATCTTCCAGAAGATCTCCAAAGAGACATTAGACGTCAC CTCTTCAAATTTGTTAAGAAAGTAAGCAGTAGAATACTTTTTATAATCACACCAATTTATCATGCTTGCACCTTGAGTTT AAATATGTGGTTTAGATCTTAGGTGAACTTAAAAATCCAAGCCAACCTGTTATATTTGAAATTCTGATTTCCTTTTGTCT TTGCTTGTAACCTGCTAAAACTGGGTCTAAGTTTAAACGTGAAAACCATTTTGAAGGAAAATTTTAATGCATCTTCATCA TGACACTAAGCAATGGTATGTATCTAGGGCCATGACAAACAATCCTGAAATCCCATCTTTCTATCTTCTGAGGATCTATA ATACTTGCAGGTTCGATTATTTTCCCTGATGGATGAGCCCATCTTAGATGCCATTTGCGAGAGACTAAAACAAACTACAT ACATACAAGGAAGTAGAGTTCTGAACAAGGGTGGTCTGGTAGAGAAGATGGTATTCGTGGCGCGTGGAAAATTGGAGAGC ATTGGAGAAGATGGAACTAGAGTTCCATTATCTGAAGGTGACGTTTGTGGTGAAGAACTTCTGACATGGTATCTTGAGCA TTCTTCTGTCAGCACAGGTATCTCAATGCACATTAACTACAAGATTCTTGTTAAATTAATATTCTAGTTAAAATAATCAC CATGGTTATCAATTTGATATTTTGATTATAACAACAACAACAAAAGCCTTATCCCACTAGAGGTCGGCTAATTTGATTCT TCTGCAGATGGGAAAAAAATTAAACTTCCAGGACAAGGGTTGCTCAGCAGTAGAACAATAAAGTGTTTAACAAATGTGGA AGCATTTTCACTCCGGGCCGCAGACCTTAGAGAAGTCACACTTCTGTTCACAAGATTCTTGCACAGTCCTCGTGTTCAAG GAGCCTTGAGGTCATTCCCTTGTTCTGTATCTGGATTTAGGTTCAGGCGTTCAGCATAATCTTCTTGACCAAATTAGTGA AATACAATAATGAATAACTAAGACAACGAGCCTTGGCGCAACAGTAAGTTTGTTGTCATGTGACTTTGTAGTTACCGGCT CTAGTAATAACACTAAGTTTGCTCTTTTACAATAATGAAAGACTAATGTCAATAGACACAAACACAGTTCTATCCTCAGT TCCTCATATTTTTTTAGAATTAGCACATTCACATGTGTTTTATTTAACACCTAGGATTCAACTTCATCTTCCACATGAAA AGAGAAGGGGAATTTTACAGGTTGAAAGCTCAATTTCTGTTTTCACATCCATGGATGACATAACTTTGGAGCTCATTTCA TAATTGTGTTACTTTAGGTATGAATCACCATATTGGAGATCCCTTGCAGCAACACGCATTCAGGTTGCATGGAGATACAG GAAGAAACGTCAAAATCGCGCTCATTCGTCATTATCAGGTTGA
CDS sequence (LotjaGi2g1v0185100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCATAATGCTTATGGAGATGCCAAAGGTTTTGCGAGAAATCATAATTCATTCTACTCTTCTTATGTTCCTGGAGT CATGAACCCTCACACTAAGTTCATACAACAATGGAACAAGGTCTTGGCCATTTTTTGCTTGGTTGCAATTTTTGTGGATC CACTATTTTTCTTCTTACTCTATGTGCAACGGGATTTTAATTGTATTGCTATCAATTGGAGATTGACAAAAGCACTTGTT ATAGTCAGAAGCATAAATGATTTTATATATTTCTTTAACATTCTTGTCCAGTTTAGGTTGGCTTATGTTTCTCCTGAGTC GAGGGTGGTTGGTGCTGGAGATTTAGTTGACCATCCAAAGAAAATCGCTCTTCATTACCTGAAGGGTTATTTTTTTATTG ACCTGTTTATTGTGTTTCCTCTTCCTCAGATAATGTTATTGTTGGTCCTACCAGAATCCATGAGGGGAGCAAATTATGCT AAGAACCTTCTGCGTGCGGTGATCCTAGTGCAATACATTCCCAGATTATTCAGGTTTCTTCCTCTGCTAATTGGACAGTC CCCAACAGGATTCATATTTGAGTCGGCCTGGGCGAATTTCATTATTAATCTTCTCATCTATATGCTTGCTAGCCATGTTG TTGGCTCTTGCTGGTACCTCTTTGGTCTGCAGAGGGTTAATCAGTGTTTTAGAAATGCCTGCCACAGTTCTAGTGTACCT GGATGCTTGAGATTCATTGATTGTGGGATTGACCATGATAGAAACTATCTCCAAGGCCCCAAATCAGAACAGTGGAACAA CAATACAGATGCTATTGCTTGTTGGGGTTCCCCTTCCACTGGTTCTTTTGATTATGGGATCTATGGCAATGCTGTGCCTC TTACTACAAAAACAGACATGGTTACCAAATATGTATTTTCTCTATTTTGGGGATTCCAGCAAATCAGTACTCTGGCTGGT AATCTAACACCAAGCAATTTTGTGTGGGAAGTCCTTTTTACTATGGCCACCATTGGATTGGGACTCTTGCTATTTGCACT TCTCATTGGAAACATGCAGAATTTTCTTCAAGGTCTTGGACGGAGGAGACAAGAAATGCAACTTAGACGACGTGATTTTG AGCAATGGATGAGATACAGACGATTACCCGAAGATCTAAGAAGGAGAGTAAGGCAGGCTGAACGGTATACTTGGGCTGCG ACACGGGGGGTGAATGAAGAAATGCTTATGGTGAATCTTCCAGAAGATCTCCAAAGAGACATTAGACGTCACCTCTTCAA ATTTGTTAAGAAAGTTCGATTATTTTCCCTGATGGATGAGCCCATCTTAGATGCCATTTGCGAGAGACTAAAACAAACTA CATACATACAAGGAAGTAGAGTTCTGAACAAGGGTGGTCTGGTAGAGAAGATGGTATTCGTGGCGCGTGGAAAATTGGAG AGCATTGGAGAAGATGGAACTAGAGTTCCATTATCTGAAGGTGACGTTTGTGGTGAAGAACTTCTGACATGGTATCTTGA GCATTCTTCTGTCAGCACAGATGGGAAAAAAATTAAACTTCCAGGACAAGGGTTGCTCAGCAGTAGAACAATAAAGTGTT TAACAAATGTGGAAGCATTTTCACTCCGGGCCGCAGACCTTAGAGAAGTCACACTTCTGTTCACAAGATTCTTGCACAGT CCTCGTGTTCAAGGAGCCTTGAGGTATGAATCACCATATTGGAGATCCCTTGCAGCAACACGCATTCAGGTTGCATGGAG ATACAGGAAGAAACGTCAAAATCGCGCTCATTCGTCATTATCAGGTTGA
Protein sequence (LotjaGi2g1v0185100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFHNAYGDAKGFARNHNSFYSSYVPGVMNPHTKFIQQWNKVLAIFCLVAIFVDPLFFFLLYVQRDFNCIAINWRLTKALV IVRSINDFIYFFNILVQFRLAYVSPESRVVGAGDLVDHPKKIALHYLKGYFFIDLFIVFPLPQIMLLLVLPESMRGANYA KNLLRAVILVQYIPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIYMLASHVVGSCWYLFGLQRVNQCFRNACHSSSVP GCLRFIDCGIDHDRNYLQGPKSEQWNNNTDAIACWGSPSTGSFDYGIYGNAVPLTTKTDMVTKYVFSLFWGFQQISTLAG NLTPSNFVWEVLFTMATIGLGLLLFALLIGNMQNFLQGLGRRRQEMQLRRRDFEQWMRYRRLPEDLRRRVRQAERYTWAA TRGVNEEMLMVNLPEDLQRDIRRHLFKFVKKVRLFSLMDEPILDAICERLKQTTYIQGSRVLNKGGLVEKMVFVARGKLE SIGEDGTRVPLSEGDVCGEELLTWYLEHSSVSTDGKKIKLPGQGLLSSRTIKCLTNVEAFSLRAADLREVTLLFTRFLHS PRVQGALRYESPYWRSLAATRIQVAWRYRKKRQNRAHSSLSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 40 | 40 | - | – | |
| PANTHER | 4 | 599 | 596 | 0.0 | – | |
| PANTHER | 4 | 599 | 596 | 0.0 | – | |
| SUPERFAMILY | 30 | 357 | 328 | 4.48E-26 | – | |
| Pfam | 40 | 363 | 324 | 6.3E-24 | ||
| TMHMM | 41 | 62 | 22 | - | – | |
| Phobius | 41 | 62 | 22 | - | – | |
| Phobius | 63 | 73 | 11 | - | – | |
| Phobius | 74 | 96 | 23 | - | – | |
| TMHMM | 79 | 101 | 23 | - | – | |
| Phobius | 97 | 128 | 32 | - | – | |
| Phobius | 129 | 150 | 22 | - | – | |
| TMHMM | 129 | 151 | 23 | - | – | |
| Phobius | 151 | 161 | 11 | - | – | |
| Phobius | 162 | 184 | 23 | - | – | |
| TMHMM | 163 | 185 | 23 | - | – | |
| Phobius | 185 | 195 | 11 | - | – | |
| Phobius | 196 | 221 | 26 | - | – | |
| TMHMM | 200 | 222 | 23 | - | – | |
| Phobius | 222 | 303 | 82 | - | – | |
| Phobius | 304 | 322 | 19 | - | – | |
| Phobius | 323 | 327 | 5 | - | – | |
| TMHMM | 327 | 349 | 23 | - | – | |
| Phobius | 328 | 349 | 22 | - | – | |
| Phobius | 350 | 602 | 253 | - | – | |
| Gene3D | 359 | 425 | 67 | 1.8E-10 | – | |
| SUPERFAMILY | 361 | 552 | 192 | 1.93E-26 | ||
| Gene3D | 432 | 556 | 125 | 1.1E-27 | ||
| CDD | 434 | 550 | 117 | 3.73551E-9 | ||
| ProSiteProfiles | 434 | 502 | 69 | 10.273 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0185100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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