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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0186400 |
| Transcript ID | LotjaGi2g1v0186400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|I1N6X6|I1N6X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0186400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:61419817..61423785) extracted from Lotus japonicus Gifu genome v1.2.
CAATGATTCTCTTAAGTCCACAAAAGTGGCTGTAGAGTTCAACCACCATCCACATCCCTTACACTATAAGTTCTCTATCT ACTTGGAAATTCTAGTTTCATTTTGAACATTGCCCTGTTTTTTCTCATGGCTGTGCCACAATCAACGTCATCTTCCTCCT CCTTATTCACATATGATGTGTTCCTCAGCTTCAGAGGCTGTGATACTCGTCGCCATTTTGCTAGTTCTCTCTACGAAGCT CTTCGTAAGATGGGAATCCACACGTTCATGGACGACAAGGAACTTGAGAGAGGGGAGGAAATCACACCGGCACTCGTCAA GGCCATTGACGAGTCCAGGATTGCTATCCCTGTATTGTCAGCAACCTATGCTTCTTCTTCCTTTTGCTTGGACGAACTTG TCACCATCATGGACCGCATTAAGAACCAAGGTCGGTTGGTCTTACCTGTCTTCTATGAGGTGGATCCTTCTGAGGTGAGG CATCAAACTGGGAGTTACAAAAAAGATCTGGCTAATCGTGAGGCCAGGTTTGAAGAGAACAAGAAAAAGTTCATGGAAAA CATGGAGAGGTTGCGGAAATGGAAGGAAGCTCTTAGCCAAGTAGCCAACTTATCAGGCTATCATTACAGCAAACTTGGGT ACCCAACTTAATTTAATCAAGTCTACCTTCTTATTATCTTATATTATCTCCGTTCCTATTTAACTGTCTACGTCTAGAAA GAAAAGAAACGCACATATTAAGGAGTATAATTAATGTTGTTAAGTTTCAAAAGAAATATTTTACACTCTAGTATAGTATG TCTTAATTTAATCAAGTCTTAATTTTACCTTGTTATCTTTTGTTTCTTGAATTGCGGTGTAGACTAGTAGAGCACTTCAT AGCTAAATCTTTTTCTTATCCATAATTGAGATTTTGATGATATATATTGACTGAAAGAGTGTGACAATTAAATTGTGTGA TGTAGACATAAATATCACAATTTTAACCTTACATCAGTGAATTTGTTGGACAGAATTACAGAAAAGAATACATCGAATGA TATTTCAGTCCCTTGTGAAGTGGGCTTAGATGCATTAAATATATATACATGGTGATTTTTCAAACTCATAACGAATTATA AAATTATTTGAGTTTCAAGGGAAACTATTTGGTTTTCTATTCAACCCATCTTATAAAACCCATTGCCTAAACCAATGGAA GTACTGTCCTGAAAATTCTTTAGTCTAGTACTTTAACATTAAGGGGGAAGAAATGCTTGTTTATGTTGAACAAGATACTT CATTGCATGGCAAACAAGTCTTAATTTTACCTTATATTTTATTTCTTTAATTACTGTGCACTTCATAGCTAAATGAATCT TTCTCTTAATTTCCTTCTCCATAATTGAGATTTTGATGCATTTAGTATATATCACTTTACATAAGCTTCTCTGTTTTGGC AGGGATGAAAAGGAACATGAGTTTATTGGAGAGATAGTTAAACAAGTCTCCAATAAGATCAACCGTGTTACTTTACATGT TGTCAAATTTCCTGTTGGACTAGATTCTAAAGTGCTAGAAGTAAAATCACTTCTAGATGTTGCATCTGATGATGGAGTTC GCATGGTGGGGATTTATGGAATTGGAGGAGCAGGGAAAACAACACTTGCAAGAGCAGTTTACAATTCCATTGTTGACAAG TTTGAATGTTTGTGTTTTCTTCATAACGTGAGGGAAAATTCAAGCAAATTGGACCATCTCCAACAGCTTCTTCTTTCTAA GACAATTGGTCTGAACACTGGCATAGGAGATGTCCATGAAGGAATTCCAATAATAAAGCGAAGGTTACAACGAATGAAGG TTCTTTTAATTCTTGATGGCGTTGACAACCTGAATCAGCTGCAGGCTATGGTTGGAGAAATTGATTGGTTTGGTCCTGGC AGTAGAATTATCATTACCACTCGAAACAAACACTTGCTAACAACTCATGGGATTGAAAGAACATATGAAGTAAATGTGTT AAATGAGGAAGAAGCTCTTGAGTTGTTGACCTTGAATGCTTTCAGAAATAACAGTTGATTCAAGTTACAAGGACCTTATA AATCGTGCAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCTAACCTGTGTAGTAAAACTGTAAA AGAATGGAAATCAGCTCTAGATCAGTATGAAAGGATTCCGGACAAAGATATCCAAAAGGTACTTAAAGTAAGCTATGATG ATTTGGGAGAGGAAGAAAAAAATGTTTTTCTTGACATTGCTTGTTGTTTCAAAGGGCATCCATTGGCCGAGGTTGAAGAT ATACTCCATGCTCATCATGGTGGTTGCCTGAAACATCACATTGGAATATTGGTTGATAGATCTCTTGTAAAGATCGGTTT GTATGGTAAGGTAACAGTACATGAGTTGATAGAGGATATGGGTAAGGAAATTGTTCGACTAGAAAAAATAAAAGAGCCTG GTGAGCGTACTAGGTTATGGAGCCCTGAAGATATACTTCAAGTTTTAGAGGAGGAGACGGTGAGTAAGTTAGATATAAAT GGTTTGGTTTTTCATCTTAAAACCTTGATTTATTGTTTTAGACCGTTATATGCTCTCGTTACAATTGTTTCTATATATGC ACGTTTAAATCTTACATGTATATATTGTGCTTTATTTGTGCATTGTCTTAAAAAGGGAACCAGAGACATTGAAATCATCT ACCTAGATTTCTCCTTGACTGGCGAAGAAGAAATAGAATGGGATGGAAAGGGCTTCGAGAATATGAAAAAGCTCAGAACA CTTATTATTAGAAATGCTCGTTTTTCTAAAGCTCCCGAATATCTCCCAAATAGTTTGAGAGTATTGGAATGGGAGAGATA TCCTTCAGAGTATTTACCATCTAATTTTAATCCGAAGCAACTTGCCATATGTAAGTTACCCAGATATTGCTTTGTTTCAT CCAACTTGGCTGAGTTATTGAAGACAACACCAAGGCAAGTGTCATGTGTTCATTTATTCAATCTGGTATATTAATAAATA AATTCTCTTTTAAGATATTAATTTGGTCTTTATGTTTTATTTCTTTGTTTCTACATTTTTTGTGTTGCAGAAGCCTGTGA ATTTGGAAGTTTAGAAGAACTTAGCAGAGATACTTATGTATTTGGTCTGTCAAATTTAGAAGAACTTTCTGTATTGGTCT CAGATCACTCGAACTTGATTGCTGAAGTAGTTCCTTGTCCGTGTTATAATTATCTTGAAGAATAATTCTATGGTGAGATG AAGTTATTTGGAGGTTCTTTTTCACCATTAATAAAGGCAAATGGAGGTTCACAGAATGAGATGAAAAATGAGGCTGCTGT GCTATGTGGTGGTATACCTCCAAAAATGATAACTGATTCAAATTCTGTAATATTAAGCTGGGTTTGTAACATTTGTTGTG ATTGGACAAATCTGGTTTATTGGAGTTACACTTGCAGATGATGGTATTAATCTTATCCTTATTTGTTATTGTAATTTGTT GGCTTCTCAGATTAGTTGCATATGGTTCTAATTCTACTGTTTCCCATTATCTTTTTAATGAATTCCTTGTATTTAGTTCC CTATTGTTCTGCCTACATGTTTCCTTTTTTACGATCAAAGATCACTCAAACTCGGTTGCTAAAGTCCTTTTCCCTGTGTT ATGGTGAGATGATGTTATCTGGAGGTTCATTTTATCATAAAATGTACATGGAGGCTCAGACAATGAGATGCAAACTGAGG CTAGTGAGCTATGTTGTTAGTCATATAGCTCCAGGCCTCCAGCAACGATAGCTGATTCAAATTCTATAATCTCAAGCAGG TCTTCTAACATTATTGGTGATTAAGTTAAACTATCTTGTTGCTACTCTCTCTTTTGTTAGGAAGAGATTTGACAGCCATT GTTTATTGTAGTTAAATTTTCATATGATGCTATTAATCTTATCCTTGAT
CDS sequence (LotjaGi2g1v0186400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTCAGAAATAACAGTTGATTCAAGTTACAAGGACCTTATAAATCGTGCAGTAACTTATGCTTCTGGCCTTCCATT GGCTTTGGAAGTAATAGGTTCTAACCTGTGTAGTAAAACTGTAAAAGAATGGAAATCAGCTCTAGATCAGTATGAAAGGA TTCCGGACAAAGATATCCAAAAGGTACTTAAAGTAAGCTATGATGATTTGGGAGAGGAAGAAAAAAATGTTTTTCTTGAC ATTGCTTGTTGTTTCAAAGGGCATCCATTGGCCGAGGTTGAAGATATACTCCATGCTCATCATGGTGGTTGCCTGAAACA TCACATTGGAATATTGGTTGATAGATCTCTTGTAAAGATCGGTTTGTATGGTAAGGTAACAGTACATGAGTTGATAGAGG ATATGGGTAAGGAAATTGTTCGACTAGAAAAAATAAAAGAGCCTGGTGAGCGTACTAGGTTATGGAGCCCTGAAGATATA CTTCAAGTTTTAGAGGAGGAGACGGGAACCAGAGACATTGAAATCATCTACCTAGATTTCTCCTTGACTGGCGAAGAAGA AATAGAATGGGATGGAAAGGGCTTCGAGAATATGAAAAAGCTCAGAACACTTATTATTAGAAATGCTCGTTTTTCTAAAG CTCCCGAATATCTCCCAAATAGTTTGAGAGTATTGGAATGGGAGAGATATCCTTCAGAGTATTTACCATCTAATTTTAAT CCGAAGCAACTTGCCATATGTAAGTTACCCAGATATTGCTTTGTTTCATCCAACTTGGCTGAGTTATTGAAGACAACACC AAGGCAAGTGTCATGTGTTCATTTATTCAATCTGGTATATTAA
Protein sequence (LotjaGi2g1v0186400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSEITVDSSYKDLINRAVTYASGLPLALEVIGSNLCSKTVKEWKSALDQYERIPDKDIQKVLKVSYDDLGEEEKNVFLD IACCFKGHPLAEVEDILHAHHGGCLKHHIGILVDRSLVKIGLYGKVTVHELIEDMGKEIVRLEKIKEPGERTRLWSPEDI LQVLEEETGTRDIEIIYLDFSLTGEEEIEWDGKGFENMKKLRTLIIRNARFSKAPEYLPNSLRVLEWERYPSEYLPSNFN PKQLAICKLPRYCFVSSNLAELLKTTPRQVSCVHLFNLVY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 7 | 81 | 75 | 1.43E-16 | ||
| PANTHER | 10 | 261 | 252 | 9.6E-101 | – | |
| PANTHER | 10 | 261 | 252 | 9.6E-101 | – | |
| Pfam | 10 | 68 | 59 | 2.2E-5 | ||
| SUPERFAMILY | 58 | 165 | 108 | 1.85E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi2g1v0186400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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