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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0205500 |
| Transcript ID | LotjaGi2g1v0205500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AMSH-like ubiquitin thioesterase 1; TAIR: AT1G48790.1 associated molecule with the SH3 domain of STAM 1; Swiss-Prot: sp|Q8VYB5|AMSH1_ARATH AMSH-like ubiquitin thioesterase 1; TrEMBL-Plants: tr|A0A0H4LWA1|A0A0H4LWA1_LOTJA Associated molecule with the SH3 domain of STAM 1; Found in the gene: LotjaGi2g1v0205500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:64885290..64891862) extracted from Lotus japonicus Gifu genome v1.2.
CACTTTTCCACTAGTTCACCCAACATTACAACATGAGAGCAGCCGCTAAACAAACCTTACATTACCATATACACCCTCAC CACAAAATCCAAATTCCAATCCTATCCCCTGGTGTCAATCGCATTCTTCTTCATCCCCAATCCCCTGAACCCTATTCAAA GCAGCCATTGACGATCGCTCCGAGTTCGCTCACCAACATCTCCATCCTCATCTCGATGTTGCTGTGAACAACAAGAAGAA GAAGAACAAACCACGATGACTTCTTCTTCTTCTTCTTTGGGCACGATCAACATCGCTGCAAGTGCTCAGAAACTCGATGT CGATAACCGAATCGCTCTCCGTTTCTACTTCCGGATCGCCGATAACATCCTCCGTCAGGTTAATTTCTCTTTTTCAAGGT TTATCGATCAATAGGAAGTTAGGAACATGCTTAGGTACTTGGGGTTTTAGATTAGTTTCCATTTTGTTGATAAAATTTAA TGATTTGAGATTATTTATTTATTTATTTACTTGCTTTTTTTGTATTGGGTGTAAATGGGAATGTTAAGGAACTCTAGTGC TTATGGGACATAGGGTCTAGTTTGGGTTTTGGTGGAGTTCAGCTGGCATTTTTGGAATTGGGGCATTCAGGCCCTTTAAA TTTCATAGCAGTTGGATAAGGGAGAATGCTTATTATCGAAATAAATTTAGTATTGCTAACAAGGTTTAGTAGAGCATCTA GTCCTGGGTTGGATTCCTGGGCGGTGCGTACGGAGAAGCATTTGTTAAGAGAGACCTACCCCCTTAACGTGATCTTAGAG TGTTAGGGATTAGTCTCATGGCTAACGGACGGGTGTGGGAAGCCAAAAAAAGTAACTTTAGTATTTAGTGTTTACCATTA GATAGTTAATGAGAGTGATATGGAAAATGGCGTGCATGAATGTCAGTATAGTTTCACCTCTGCCTTTTCCTTGCAGTGCT GTTATATTATGCAGCACAATGCTGGTAAGTAATTGATTTATTCTTTATCTCAAGATATGCTTGTGCTGATGTTATATTTT CTACTCCTGAATGTATTGTCGCACGTTAATTTTTGTTTTATGTTTTGAGATGTTTATGTGGTCATGGTTCTTTCTTTTGA AGATGAATTTATTGTTTAGTTGCTTTGCCTGACTCTAAGCTCCTACTTTTGATATAAAAAATTGCAGGCTGATATCTTTC GTGCGGAGAAGAATATTATTGACCTATATGTCATGCTTCTAAGATTTTCTAGGTAAAACTAGGTGGCTTGTATTATTATT TGACTCTTAAGAGGACTGGCTACGGTTGAATGATTTAAAACTGGTGGACTTCATTGCATTTGTTATTTTGTCATCAAATT GCATTGAGGATCCTTCTTTTTGTTTTCTTTTAGTTTGGTGACTGAGACAATACCGCGTCACCGAGATTATAGATCATCTC CACAGAGCAGGAAAGAATCATTGAGAAAGGTTGATTACGACTCTTGTCTTTCGATGAAAGCGTGTTATAAAGTCTTCGAT TTAATCTGATTTTCAATTTCTTCCTGTAGAAATTGTTAATATCTTTGAGTGAACTGGAGAAGTTGAAACCACTGGTCCTA CAGAAGATCAATGAGCTTAACAGCAGACATGTATACCAACAAAATGGGAGGGGGAAAATTCATTCAAATAATTCAGTAGC AGCTTTTTCACCTGTGAAAAAGCAAACTTTGGCTAGTTATGGCCAAATAAAGGTAAAGTTTACTGGAGAGTTTGATTTGG AGGTTGTAGTTTACAAGTGATAGTATTTCCATCAAATTATATCAATTCTCTTGTTGATTGCATACATCTTTTCTGTTTTT CTTTTCCATTTCAAAAGAAGTTTTGCATTCATACGTTGTATATTTAAGCAGACAGTCAGACCAACGGCGAGGGAGTTTGT TTACCAAGGATCAGGTGGCCAACAGTACTCTTATGTCAGGCCTGTGGAGGAGCAAGTGCGAAGACTGTAAGTATTATACT CATATTTCTTGTATAATTGGCCCCCTTGAGGTGATAGGTAAACTTTCATTAATTTGTTTGGTTACTTTTTCTAATATCAT CTTAGAAAGCTTCTTCATTTGAAAGTGGATAATGCTAGATGGTCTTTCTTTTATTGTGCAATGTTGGTAGTTTGGGTATG AGGGTATCTACTTATCTGAATTTTGTAGCAAGAATAGTTAAAATTTACTTGGTTATTTCACAATACTATGTTAATTTTAA AATTAAAATAGAAAATTTGACGTAGTCAAGTGAGCAAGAATTCAGCAGTTAAAACATTCCTTTTCTAGGGTTATACCACC TGGTTGAAATACTATTTATCTTTGTACCAACAGTGTAGTGTGTTGGGTGACTGATAACAGTACACTATGAAATTTTAAGA TGTCAGTTGACATGATTTCCTGTTTCTGAATTTGATTGAAAAACCTCTGAAAAAATTATGTCTGCCAAAAAATTGAAAAA GAATAAGTGATGACTGATGAGGAATTTTAAACTCTGTAAATAACTTAAATAACCATAACCAAAGGAATCAGGACATGTTC AAAATTGAGCAATTTAAAAACACATTTGAATCTTCAAGAATTTGCAAGCAGGAGCCTGATAAAGCAAGATCTAACGATGA TAGAATATGAGATGCTTTTTGTATTATGCATGGCCGGTTATGTAGTCTCTACTCAGCATGCATTTGGTTATTTGCATTTC TGTCATTATACAGCTGTAGTTAGTTATACTTATCACTGTTGTAGTTTGTTAGACTTAGCTGAGTTTGCTCAGCAAGCTGA AGCACTCCATATATACTTGTAATGTGCCATATTCAGCAAGCTTGAATTTCAGTTCTTGCAAAATCTCTCTTTCTCTCATT TTCTCCCAACTATGATTTCTATCAAATGGATGAAATGCATTAGATATGTTTAATTTTATCATTTAGATGTAATTGTACTG CTTAGAAATTATAAAAGTTCAGTCTCCTTGAGCTTTCAGGATATTTCACAAACTGATCATCCTGCAGTTTCAGAAAAAAA TTGCTTGACTAATATGTCCCTTCCATTTTTAATTTTTGTAGATCTCTAACTCTGCCTCCTCCAAAGGAAGAAACTCTCTC TAGACATTCTATCCTTGGTCCCAATGGGCTCAACGGGCAGTGGCGGCCACCTACTACTGATAAAGGGGTATGCTGGTTTA TATCCGAATGTTTCAATTCTATTCTATTCAAAGATCATCCTGACTTCTCTCTCTGGATGTAGGTCAGGTATCCAACCAAT ATAGATCTGTCTCCAGTTGACATACCAAGGTTATTGCCTAGTACTTTTCTCTATTATTGGCCTTCCAGTTATTGTAACTG ATGTTGTGTGTCATATTCTAGCCTTTTTACCATGATGGAAAATTATCTTAATTTTTCTTAAAAGGATTCATTGATCTATG GGAAGTTCAATGTTTTAAAAGTAATTTTGTAGTCCATGATGCATCTGTGAACTGCCTATCTATGAATTTTATATATTAAC CACATCCATCCTACTGGGTTTTCTCTCAGAACACACAGCCTACAACATTCCTTGGAAGATGAATCTCTGAATAAAAAGGA TAATAGCATTGCAGAACCCTATAAATCAGATTTAGATTCAATTCTTACCCAGAGTGAGGACAGCCAGCCCCAGCAAGCTC AGGAACCTCCTTCTCTTATCTCTTTTGAGGCGATAGAAACCCCTGCTCGAATAGAAGTTATCAGACAGCCTTCTCCTCCA CCTGTACTTGCTGAAGTGCAAGATTTGGTCCCTGCAGTGTCACCTCAAGTTAATGAGGCAGGATGTTTGACAGATATTCC ATCATCTGATAGTTTTGTTCGTGCTGAGTCTCCTCTGCAATTGCACATTGTAAGAGTCAATTACATTTGCTTACTATATC TAATGTATTTTTCTTTTAGGTTGTCATTTCTAGGAAGTTCATGTTGGGCATTTAGTTTGTTTAAATATACTTACAATTTC TAAAATACTGAATGGGGACAAAATTTGAAATTATTCACCCTTTTTCTAATAATTGTTTCTATTTGCAGTCAACTGCTATG ATGGACAGTTTTATGAAGCTTGCCAAGTCGAATACTAAGAAAAATTTAGAGACTTGTGGTATTCTTGCTGGCGTACTTGT AAGTGTTGTTTACAACTTTTTTGTCTTAAACTAAAGCAACATGCAAAGATAGATCCTAAGGAGCTTGATACCCCCAAGTT TAATTGTGGTCCGGTTAACTTAGAAACACTTCATTGCTCTACTACTTGCATCTAATAATATATTTGAAAAAAATAATGTT TTGTATAGTTACAGTCTTGTGTACTGCAAATCTGTAATAACCTTTTTCTTTTTACTTTCTGAATTGATTTTGTGTTTTAT GTATCAACATGTTAGATGCAAGGTATTTCTCTATACTAGTTTGCAAAATTTTCCCCAATATTGTTGGGCTTCCTAAGCTT TTGCCTCTGGTACCTTCAATACTTTAGATCAACTGTGAGATATTGATTGTTATTTTGCAAAACACACCTGATCTGCAGAA AAACAGGAAATTTTATATTACTGCTCTGATAATCCCAAAACAGGAGTCTACATCAGATTCTGTAAGAATTCTTTCATTAC AATTTTTTTTGGAGAATATGTATTAGTTCTATTTAATTTGTAAATGTTTCATTTATTATTGTTCTTCCTGAGCAGTGTCA GGCTACAAATGAAGAAGAAATATTTGAAGTGCAGGATAAACGATCTCTTTTCCCCCTTGGGTGGATCCATGTGAGTTTTT GAATTTTGTGTATGGAAGAAACTTAATTTTGTTATAAAACACCATAAATAGATATGAGAAGTGACATTATTTAAAATGAA ATTTATCAATTTCTGATTAGTTTCGTTTGACTTTTTGCAAGATAGTTTTCATCTGAACTTTTTTTCACTTCACTAACGTT CCATTGTTTTATAACTGAAATATGTTGTTCTGAATTGGCAGACACATCCTACACAATCTTGTTTCATGTCATCGATTGAT CTGCACACCCATTATTCATATCAGGCGAGTTCATTAATTTTGAGTAGTTGGTCATTGATGTTCTTTGCTCTGTCTATGGA GATGAATTGCGTTGTTTTCTATGTGGAAATGGTGGTTGAAGAACTACAAATGATGGAACTGTTTTATAAATTACTTGTAG TTGTAACTCTAATTTCTTGTACTATTTTATGCAAATGAATGATCGTAATTAGCCATCCTGAAGTCAGTTACTGATCTTTA TTTTACCGAATATATTGTTTAGAATATAATTCAAATATATATGCAAAATCCTTTTATTTACTCTACCTTGGCTTTGTAAT CAAACTCTTATATTGGTATTTCTATCATAGATGGGACAGTCCTGTCACTCGTTCACACATATCCTGCATTTTCTTTATAG CTTATATTCATTTCTTATGCCAATGCTTGTCTTTTTAGATTATGCTGCCAGAATCTGTTGCTATCGTCATGGCGCCCAAA GATAGTTCAAGGTAAGATCATCCCATCTCAGATGTATTTTGATGTATGGATGATGGCAAAGAAAGCATCTTCATAACGAA ATTAAGTGGGTGAGATCAAATTTAAAATCTATGATTAGAAGCGGGTTGGGATTGAGTTTGGTTTTTTCCTGAACTTGGTC AAAGCGGGTTTTAGGGTCTAGGTTGGGGGGTACCCACAGGTTCTGATTATCAGCATATTCACTAACCTTTGCCCCTAGAA ACTGTAGTATTCTTCTATTTTCATACAAAGAAAAAGTACTTAATTTTGTATACTATTTCATAACAACTTAAATGTTTATG TATCTTGAGATTAGGTTCCTTATGCTAGCTGTCTTTCAGAAAACTTCCCTACTTTGATATTAAGCCTGTCAATTTGCATG CTGCACAGAAACCATGGCATTTTTCGGTTGACAACACCTGGTGGAATGTCTGTGATCAAACAATGCGATCAACGCGGGTT TCATCCACATAATCAGCCTCCAGATGGTGGTCCTATCTACGATACCTGTACAGATGTTTACATGAACCCAGATTTAAAAT TTGATGTCATTGACCTTAGGTGATACAACTTGACAACATACACACTGTTATTGTCCATATTCATAGACCCTGCTTTTTTC CTATATATAGGTTTTTCCTTTGCTATTAAAGCGGCCGTGGCTATAAAGCATGTCCGGCTGTGTTTGTATAAAGAAATCTT GCTCTATGGAATGACTGTTCATTCTTTGGGTTAATACTACTCACCCTTGTGCTGCAAGCATGTTCATTTTACATTAATGT CAAAAAGGGTAGCATTTGGGTGCTTTGATCGAGTCCTCAATTTGTCTAGTTATGTTATGGTGAGGATATAATTTGAGTAT TTCACCTCATGTAAAATTAAATTAAAAGGAAACATCTTAGCTACAATGAGTAAGGATGTGTCGGAGTGATTTTGTTTCGC AAATAAAAGAGCTTTCAACTTTCTATTATGTGTAATACAAACATGCTAAACTTATTACATCTAAGGTATTATGAAGGCAT CAAGGGTCTTGCG
CDS sequence (LotjaGi2g1v0205500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTCTTCTTCTTCTTCTTTGGGCACGATCAACATCGCTGCAAGTGCTCAGAAACTCGATGTCGATAACCGAATCGC TCTCCGTTTCTACTTCCGGATCGCCGATAACATCCTCCGTCAGGCTGATATCTTTCGTGCGGAGAAGAATATTATTGACC TATATGTCATGCTTCTAAGATTTTCTAGTTTGGTGACTGAGACAATACCGCGTCACCGAGATTATAGATCATCTCCACAG AGCAGGAAAGAATCATTGAGAAAGAAATTGTTAATATCTTTGAGTGAACTGGAGAAGTTGAAACCACTGGTCCTACAGAA GATCAATGAGCTTAACAGCAGACATGTATACCAACAAAATGGGAGGGGGAAAATTCATTCAAATAATTCAGTAGCAGCTT TTTCACCTGTGAAAAAGCAAACTTTGGCTAGTTATGGCCAAATAAAGACAGTCAGACCAACGGCGAGGGAGTTTGTTTAC CAAGGATCAGGTGGCCAACAGTACTCTTATGTCAGGCCTGTGGAGGAGCAAGTGCGAAGACTATCTCTAACTCTGCCTCC TCCAAAGGAAGAAACTCTCTCTAGACATTCTATCCTTGGTCCCAATGGGCTCAACGGGCAGTGGCGGCCACCTACTACTG ATAAAGGGGTCAGGTATCCAACCAATATAGATCTGTCTCCAGTTGACATACCAAGAACACACAGCCTACAACATTCCTTG GAAGATGAATCTCTGAATAAAAAGGATAATAGCATTGCAGAACCCTATAAATCAGATTTAGATTCAATTCTTACCCAGAG TGAGGACAGCCAGCCCCAGCAAGCTCAGGAACCTCCTTCTCTTATCTCTTTTGAGGCGATAGAAACCCCTGCTCGAATAG AAGTTATCAGACAGCCTTCTCCTCCACCTGTACTTGCTGAAGTGCAAGATTTGGTCCCTGCAGTGTCACCTCAAGTTAAT GAGGCAGGATGTTTGACAGATATTCCATCATCTGATAGTTTTGTTCGTGCTGAGTCTCCTCTGCAATTGCACATTTCAAC TGCTATGATGGACAGTTTTATGAAGCTTGCCAAGTCGAATACTAAGAAAAATTTAGAGACTTGTGGTATTCTTGCTGGCG TACTTAAAAACAGGAAATTTTATATTACTGCTCTGATAATCCCAAAACAGGAGTCTACATCAGATTCTTGTCAGGCTACA AATGAAGAAGAAATATTTGAAGTGCAGGATAAACGATCTCTTTTCCCCCTTGGGTGGATCCATACACATCCTACACAATC TTGTTTCATGTCATCGATTGATCTGCACACCCATTATTCATATCAGATTATGCTGCCAGAATCTGTTGCTATCGTCATGG CGCCCAAAGATAGTTCAAGAAACCATGGCATTTTTCGGTTGACAACACCTGGTGGAATGTCTGTGATCAAACAATGCGAT CAACGCGGGTTTCATCCACATAATCAGCCTCCAGATGGTGGTCCTATCTACGATACCTGTACAGATGTTTACATGAACCC AGATTTAAAATTTGATGTCATTGACCTTAGGTGA
Protein sequence (LotjaGi2g1v0205500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSSSSSLGTINIAASAQKLDVDNRIALRFYFRIADNILRQADIFRAEKNIIDLYVMLLRFSSLVTETIPRHRDYRSSPQ SRKESLRKKLLISLSELEKLKPLVLQKINELNSRHVYQQNGRGKIHSNNSVAAFSPVKKQTLASYGQIKTVRPTAREFVY QGSGGQQYSYVRPVEEQVRRLSLTLPPPKEETLSRHSILGPNGLNGQWRPPTTDKGVRYPTNIDLSPVDIPRTHSLQHSL EDESLNKKDNSIAEPYKSDLDSILTQSEDSQPQQAQEPPSLISFEAIETPARIEVIRQPSPPPVLAEVQDLVPAVSPQVN EAGCLTDIPSSDSFVRAESPLQLHISTAMMDSFMKLAKSNTKKNLETCGILAGVLKNRKFYITALIIPKQESTSDSCQAT NEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPESVAIVMAPKDSSRNHGIFRLTTPGGMSVIKQCD QRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 517 | 517 | 0.0 | – | |
| PANTHER | 1 | 517 | 517 | 0.0 | – | |
| Gene3D | 4 | 132 | 129 | 4.0E-28 | – | |
| Pfam | 15 | 101 | 87 | 3.7E-11 | ||
| SUPERFAMILY | 25 | 124 | 100 | 7.32E-5 | – | |
| MobiDBLite | 185 | 229 | 45 | - | – | |
| Gene3D | 330 | 517 | 188 | 2.4E-75 | – | |
| Pfam | 340 | 446 | 107 | 5.8E-18 | ||
| SUPERFAMILY | 342 | 473 | 132 | 8.5E-21 | – | |
| SMART | 342 | 470 | 129 | 7.1E-19 | ||
| CDD | 342 | 517 | 176 | 4.0445E-110 | – | |
| ProSiteProfiles | 343 | 473 | 131 | 31.786 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0205500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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