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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SM00232
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We have found 37 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.017s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0265709.1
n.a. 26S proteasome non-ATPase regulatory subunit [Medicago truncatula] gi|357447037|ref|XP_003593794.1| chr0 137648273 137652195 +
2 domain predictions
1 GO term
Lj0g3v0268859.2
n.a. PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 7-like [Cicer arietinum] gi|502137923|ref|XP_004503231.1| chr0 139253829 139258473 -
2 domain predictions
1 GO term
Lj0g3v0320179.1
n.a. PREDICTED: COP9 signalosome complex subunit 6a-like [Cicer arietinum] gi|502127367|ref|XP_004499677.1| chr0 167097946 167106869 +
2 domain predictions
1 GO term
Lj1g3v1966230.1
n.a. PREDICTED: COP9 signalosome complex subunit 5a-like [Cicer arietinum] gi|502132165|ref|XP_004501247.1| chr1 23275982 23280268 +
2 domain predictions
1 GO term
Lj1g3v3170080.1
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit H-like [Glycine max] gi|356568923|ref|XP_003552657.1| chr1 35919719 35924201 +
2 domain predictions
1 GO term
Lj2g3v1404830.1
n.a. PREDICTED: AMSH-like ubiquitin thiolesterase 2-like [Glycine max] gi|356497755|ref|XP_003517724.1| chr2 22153204 22158550 +
2 domain predictions
1 GO term
Lj2g3v1404830.2
n.a. STAM-binding protein [Medicago truncatula] gi|357485879|ref|XP_003613227.1| chr2 22153753 22158550 +
2 domain predictions
1 GO term
Lj2g3v2702320.1
n.a. PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 7-like [Glycine max] gi|356539941|ref|XP_003538451.1| chr2 36195823 36199679 -
2 domain predictions
1 GO term
Lj2g3v2703350.1
n.a. PREDICTED: eukaryotic translation initiation factor 3 subunit F-like isoform X1 [Cicer arietinum] gi|502137929|ref|XP_004503233.1| chr2 36209772 36213509 -
2 domain predictions
1 GO term
Lj3g3v0044310.3
n.a. PREDICTED: pre-mRNA-processing-splicing factor 8-like [Cicer arietinum] gi|502080722|ref|XP_004486659.1| chr3 575727 582318 +
2 domain predictions
1 GO term
Lj3g3v0075800.1
n.a. Lys-63-specific deubiquitinase BRCC36 [Medicago truncatula] gi|357455111|ref|XP_003597836.1| chr3 735748 741228 +
2 domain predictions
1 GO term
Lj4g3v2282930.1
n.a. PREDICTED: AMSH-like ubiquitin thiolesterase 3-like [Glycine max] gi|356564628|ref|XP_003550553.1| chr4 31748234 31755037 +
2 domain predictions
1 GO term
Lj5g3v0001030.1
n.a. PREDICTED: 26S proteasome non-ATPase regulatory subunit 14-like [Glycine max] gi|356552194|ref|XP_003544454.1| chr5 9926 13986 +
2 domain predictions
1 GO term
Lj6g3v1966950.1
n.a. 26S proteasome non-ATPase regulatory subunit [Medicago truncatula] gi|357447037|ref|XP_003593794.1| chr6 22704387 22714402 +
2 domain predictions
1 GO term
LotjaGi1g1v0080300.1
n.a. Eukaryotic translation initiation factor 3 subunit F; TAIR: AT5G05780.1 RP non-ATPase subunit 8A; Swiss-Prot: sp|O24412|PSD7A_ARATH 26S proteasome non-ATPase regulatory subunit 7 homolog A; TrEMBL-Plants: tr|V7CZG2|V7CZG2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0080300 LjG1.1_chr1 11598464 11604711 +
2 domain predictions
1 GO term
LotjaGi1g1v0080300.2
n.a. Eukaryotic translation initiation factor 3 subunit F; TAIR: AT5G05780.2 RP non-ATPase subunit 8A; Swiss-Prot: sp|O24412|PSD7A_ARATH 26S proteasome non-ATPase regulatory subunit 7 homolog A; TrEMBL-Plants: tr|I1LMP2|I1LMP2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0080300 LjG1.1_chr1 11598721 11602762 +
2 domain predictions
1 GO term
LotjaGi1g1v0080300.3
n.a. Eukaryotic translation initiation factor 3 subunit F; TAIR: AT5G05780.1 RP non-ATPase subunit 8A; Swiss-Prot: sp|O24412|PSD7A_ARATH 26S proteasome non-ATPase regulatory subunit 7 homolog A; TrEMBL-Plants: tr|I1LMP2|I1LMP2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0080300 LjG1.1_chr1 11598721 11602762 +
2 domain predictions
1 GO term
LotjaGi1g1v0393500.1
n.a. COP9 signalosome complex subunit 5; TAIR: AT1G71230.1 COP9-signalosome 5B; Swiss-Prot: sp|Q9FVU9|CSN5A_ARATH COP9 signalosome complex subunit 5a; TrEMBL-Plants: tr|G7JCC9|G7JCC9_MEDTR COP9 signalosome complex subunit 5; Found in the gene: LotjaGi1g1v0393500 LjG1.1_chr1 87802062 87807462 +
2 domain predictions
1 GO term
LotjaGi1g1v0393500.2
n.a. COP9 signalosome complex subunit 5; TAIR: AT1G71230.1 COP9-signalosome 5B; Swiss-Prot: sp|Q9FVU9|CSN5A_ARATH COP9 signalosome complex subunit 5a; TrEMBL-Plants: tr|G7JCC9|G7JCC9_MEDTR COP9 signalosome complex subunit 5; Found in the gene: LotjaGi1g1v0393500 LjG1.1_chr1 87802086 87806390 +
2 domain predictions
1 GO term
LotjaGi1g1v0530600.1
n.a. Eukaryotic translation initiation factor 3 subunit H; TAIR: AT1G10840.1 translation initiation factor 3 subunit H1; Swiss-Prot: sp|Q9C5Z2|EIF3H_ARATH Eukaryotic translation initiation factor 3 subunit H; TrEMBL-Plants: tr|I3SB83|I3SB83_LOTJA Eukaryotic translation initiation factor 3 subunit H; Found in the gene: LotjaGi1g1v0530600 LjG1.1_chr1 105774971 105780448 +
2 domain predictions
1 GO term
LotjaGi1g1v0530600.2
n.a. Eukaryotic translation initiation factor 3 subunit H; TAIR: AT1G10840.1 translation initiation factor 3 subunit H1; Swiss-Prot: sp|Q9C5Z2|EIF3H_ARATH Eukaryotic translation initiation factor 3 subunit H; TrEMBL-Plants: tr|I3SB83|I3SB83_LOTJA Eukaryotic translation initiation factor 3 subunit H; Found in the gene: LotjaGi1g1v0530600 LjG1.1_chr1 105775109 105778811 +
2 domain predictions
1 GO term
LotjaGi2g1v0205500.1
n.a. AMSH-like ubiquitin thioesterase 1; TAIR: AT1G48790.1 associated molecule with the SH3 domain of STAM 1; Swiss-Prot: sp|Q8VYB5|AMSH1_ARATH AMSH-like ubiquitin thioesterase 1; TrEMBL-Plants: tr|A0A0H4LWA1|A0A0H4LWA1_LOTJA Associated molecule with the SH3 domain of STAM 1; Found in the gene: LotjaGi2g1v0205500 LjG1.1_chr2 64885168 64896299 -
2 domain predictions
1 GO term
LotjaGi2g1v0205500.2
n.a. AMSH-like ubiquitin thioesterase 1; TAIR: AT1G48790.1 associated molecule with the SH3 domain of STAM 1; Swiss-Prot: sp|Q8VYB5|AMSH1_ARATH AMSH-like ubiquitin thioesterase 1; TrEMBL-Plants: tr|A0A0H4LWA1|A0A0H4LWA1_LOTJA Associated molecule with the SH3 domain of STAM 1; Found in the gene: LotjaGi2g1v0205500 LjG1.1_chr2 64885290 64891862 -
2 domain predictions
1 GO term
LotjaGi2g1v0320500.1
n.a. AMSH-like ubiquitin thioesterase 1; TAIR: AT1G10600.1 associated molecule with the SH3 domain of STAM 2; Swiss-Prot: sp|Q6NKP9|AMSH2_ARATH AMSH-like ubiquitin thioesterase 2; TrEMBL-Plants: tr|A0A151TGJ4|A0A151TGJ4_CAJCA ESCRT I complex subunit sst2; Found in the gene: LotjaGi2g1v0320500 LjG1.1_chr2 79558339 79563683 +
2 domain predictions
1 GO term
LotjaGi2g1v0320500.2
n.a. AMSH-like ubiquitin thioesterase 1; TAIR: AT1G10600.1 associated molecule with the SH3 domain of STAM 2; Swiss-Prot: sp|Q6NKP9|AMSH2_ARATH AMSH-like ubiquitin thioesterase 2; TrEMBL-Plants: tr|A0A151TGJ4|A0A151TGJ4_CAJCA ESCRT I complex subunit sst2; Found in the gene: LotjaGi2g1v0320500 LjG1.1_chr2 79558339 79563683 +
2 domain predictions
1 GO term
LotjaGi3g1v0008200.1
n.a. Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp|Q9SSD2|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr|V7BXW4|V7BXW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0008200 LjG1.1_chr3 920193 932690 +
2 domain predictions
1 GO term
LotjaGi3g1v0008200.2
n.a. Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp|Q9SSD2|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr|V7BXW4|V7BXW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0008200 LjG1.1_chr3 920435 932012 +
2 domain predictions
1 GO term
LotjaGi3g1v0008200.3
n.a. Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp|Q9SSD2|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr|V7BXW4|V7BXW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0008200 LjG1.1_chr3 920435 932012 +
2 domain predictions
1 GO term
LotjaGi3g1v0008200.4
n.a. Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp|Q9SSD2|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr|V7BXW4|V7BXW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0008200 LjG1.1_chr3 920935 932012 +
2 domain predictions
1 GO term
LotjaGi3g1v0011600.1
n.a. Lys-63-specific deubiquitinase BRCC36; TAIR: AT1G80210.1 Mov34/MPN/PAD-1 family protein; Swiss-Prot: sp|Q4VA72|BRCC3_XENTR Lys-63-specific deubiquitinase BRCC36; TrEMBL-Plants: tr|C6T923|C6T923_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0011600 LjG1.1_chr3 1273634 1280000 +
2 domain predictions
1 GO term
LotjaGi3g1v0011600.3
n.a. Lys-63-specific deubiquitinase BRCC36; TAIR: AT1G80210.1 Mov34/MPN/PAD-1 family protein; Swiss-Prot: sp|Q4VA72|BRCC3_XENTR Lys-63-specific deubiquitinase BRCC36; TrEMBL-Plants: tr|C6T923|C6T923_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0011600 LjG1.1_chr3 1273967 1279361 +
2 domain predictions
1 GO term
LotjaGi3g1v0331000.1
n.a. Eukaryotic translation initiation factor 3 subunit F; TAIR: AT5G56280.1 COP9 signalosome subunit 6A; Swiss-Prot: sp|Q8W206|CSN6A_ARATH COP9 signalosome complex subunit 6a; TrEMBL-Plants: tr|I3S7E3|I3S7E3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0331000 LjG1.1_chr3 69959179 69968413 +
2 domain predictions
1 GO term
LotjaGi4g1v0336100.1
n.a. AMSH-like ubiquitin thioesterase 1; TAIR: AT4G16144.1 associated molecule with the SH3 domain of STAM 3; Swiss-Prot: sp|Q5PNU3|AMSH3_ARATH AMSH-like ubiquitin thioesterase 3; TrEMBL-Plants: tr|A0A151ST25|A0A151ST25_CAJCA ESCRT I complex subunit sst2; Found in the gene: LotjaGi4g1v0336100 LjG1.1_chr4 71641876 71649001 +
2 domain predictions
1 GO term
LotjaGi5g1v0025800.1
n.a. 26S proteasome regulatory subunit; TAIR: AT5G23540.1 Mov34/MPN/PAD-1 family protein; Swiss-Prot: sp|Q9LT08|PSDE_ARATH 26S proteasome non-ATPase regulatory subunit 14 homolog; TrEMBL-Plants: tr|A0A1J7HGT4|A0A1J7HGT4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0025800 LjG1.1_chr5 4391629 4397963 +
2 domain predictions
1 GO term
LotjaGi6g1v0070800.1
n.a. Eukaryotic translation initiation factor 3 subunit F; TAIR: AT5G05780.1 RP non-ATPase subunit 8A; Swiss-Prot: sp|O24412|PSD7A_ARATH 26S proteasome non-ATPase regulatory subunit 7 homolog A; TrEMBL-Plants: tr|I3S3L3|I3S3L3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0070800 LjG1.1_chr6 13481131 13485840 -
2 domain predictions
1 GO term
LotjaGi6g1v0071100.1
n.a. Eukaryotic translation initiation factor 3 subunit F; TAIR: AT2G39990.1 eukaryotic translation initiation factor 2; Swiss-Prot: sp|O04202|EIF3F_ARATH Eukaryotic translation initiation factor 3 subunit F; TrEMBL-Plants: tr|I3SNM9|I3SNM9_LOTJA Eukaryotic translation initiation factor 3 subunit F; Found in the gene: LotjaGi6g1v0071100 LjG1.1_chr6 13530961 13534958 -
2 domain predictions
1 GO term
LotjaGi6g1v0316900.1
n.a. 26S proteasome regulatory subunit; TAIR: AT5G23540.1 Mov34/MPN/PAD-1 family protein; Swiss-Prot: sp|Q9LT08|PSDE_ARATH 26S proteasome non-ATPase regulatory subunit 14 homolog; TrEMBL-Plants: tr|A0A022R2G9|A0A022R2G9_ERYGU Uncharacterized protein; Found in the gene: LotjaGi6g1v0316900 LjG1.1_chr6 63448798 63460757 +
2 domain predictions
1 GO term