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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0222700 |
| Transcript ID | LotjaGi2g1v0222700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PsbP-domain protein 1; TAIR: AT4G15510.1 Photosystem II reaction center PsbP family protein; Swiss-Prot: sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic; TrEMBL-Plants: tr|I3SFZ1|I3SFZ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0222700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:67869736..67872730) extracted from Lotus japonicus Gifu genome v1.2.
GAGAGGGTTTGGCTGATAAGGAAATGAGGTGGAGAGTGGTCCCTGTCTTATCATCACAAGGAAATCAAAACACTTCAGTT CAGCTCAGCACCATAGCATTAGCAAATAGCAATTGCATACACCACCACCACTCTCTACCATGGCAAAGATGGTGGTGGCA CCACCCCAACATCATAACCAACCATCTTTCTCTCCTTTGGCTTCCTCTCTTTCTGAATTCTCCTCACCAACTTTTCTAAC TCAAATTCAGGTAATTCACTTCACCCTTTTCTCTCTATACATAATCATCATAACTATAACTGTGCATTTTGGTTACAGTT GAAAAGAAAAGTATGGCAGCCAAAAGGGTCATTTTCCGCCACAGCATCAAGCCCCAAGAAAATGCTCATGATGGGGGGCA ATAGGTTTACTGGTGTATTTTTGTCTAGGCTCTTTGTCAAAGAGGGTCACCAGGTATGTATGAGTATGACTTACATTACA TTACAGATTTCGCGCTAACCGGATACTTTGGAAGACTTGAATAAAGGGAACCAACCTTCACTTTTGAATTTGGCAGGTCA CTTTATGTACAAGAGGAGAAGTTCCTATCACCCAACATTTGCCTGATGAATCAGACAGTGATTGTGCTGATTTTTCTTCC AAGGTATGCTAATTGTTAATGTAAACTGTCATGAACCAATTATCTCAAAAGCTTTAGTTAGTGGGTAAAAGCCACCCAAA TGTTTTTATATTATAGTTCTAAGTAACATAAACATTGGATTGGACTTACCTGCCTATAAGGCATGATGAGGAGGGGATGC TTTTCACATTTGCTATTGTGATATCTGGCACATTCATCCTGTGTTATAATTTTGCATATCATAGATCAAGCATTTTAAAG AAGACATGAAGGACTTTAAATTTGTAAAATCGAATCTCTCAGCATCTCACCATTTCACTTTTTTTGGTCTTTTTGAATAG GACATGGAAACATAGTGAAATATGATTCGACATTTGTGTAAAACTTGTCTAAATTGTTAGTGTATAGTTATAAAACTCAT TAGGTTATGCCCTTTGTGGTTTTTTGTCCCTTCTGATCTTACTAGATATTGTCTTATGTTATATCAGTATAATTCAATGA GATCCTTTGGTTGCAAATAGCATGGAATGAAAGAAATGCTTATAAATTTTATTTTATTGTTAAGCTTACTAGAATCTTAG TTCACTTTGTATTAACATGTTCTTTTTAAGGTTAGTATCCATCTGCAAATGGCCTTTGATTCTATCTATTCTAATATTAT AATCAACCAGTCTAAAGCTTTTGCAGTTCCAAGGAGGAAAGCAATGTCCTTGATCTTGTCAAGTTGTATTCTCTCAAAGG TTGGTTTGGCATTTGCTCAACAGCCTCCTGTATTCCGCGAGTACGTGGACACATTTGATGGTTACTCATTCAAGTACCCT GGAAATTGGATCCAAGTCCGAGGTGCTGGGGCTGACATATTTTTCAGGGACCCTTATATCCTTGATGAAAATCTATCCCT TGAAATCTCTTCACCTTCATCTTCCCAATACAAGAGCGTTGAAGACTTGGGTCCACCCCAAGAAGCAGGAAAGAAAGTGC TCAAGCAGTATCTGACTGAATTTATGTCTACACGACTTGGCGTTAGGCGTGAAGCAAATGTTCTTTCCACATCTTCCAGA GTAGCTGATGATGGCAAGTTATACTATCAAGTTGAGGTTGGTTATGATTTATTAACAATTACATTCAAAGCATCAATTTG ATGAGTTATTCAGTTATTCCTTAGCTGCAATGAAATGTGTGCCGAGGTGCGCAAATATGGGTACACATATTTCCATATAA ACTTGCTATAGTAAGACCTACCAAAACTCGCATGGGTTTGGGAATGGGACCTCCCGACTATTGGGTGGCTGGATGAGTGT AAATTGATGGAAAGGAGTTCATCAATCATATGCCTTACTAATAATCATCTTCCCTTTGTGTTCTTTCATTCAAGAACAGT TTACTTTTACAATCCCGATTGCAAAGTTACATCAATTGATTAACTTAATGTATTGTCTATGTTGCTAGGTAAACATAAAG TCATATGCTAGTAATAATGAGCTTGCTGTTATGCCACAAGACCGGGTGGTACGTCTGGAATGGGATCGGAGGTACCTATC CGTTCTAGGAGTTGAAAACAACCAACTCTATGAGTTGAGATTGCAGACACCAGAAAATGTGTTTCAAGAGGAAGAGAGTG ATCTTCGTCGAGTCATGGACTCATTTCGAGTGAACCAGATTGTTCGTTAGAACTAGAGTGTTGGATAGTTATTCCAATGA CCTCTTTCTCTAACGTATGTTTTGGCTTTCTTGCATTTTTTTTTGTCCTTTTCTTTTTAAACTATAGAGTTCAATTTTTG ACTCTCTTCAATTGTAATTGCTGTTTCCAGTTTCATATTTTTTCAAGTCTGCTTGTTAAATTAATGCTGATAAAGTTTTA CATTGGCCTATGGATACTCAACACTAAGCATGAGAAACAGGCATCATTTTACACTGAGCTACTCAATGTCCTCGTTCAAA TCCAACGAGTGCCTTGAACATATTCAAAACCCTTTCTCTCTCTGCTGATGAAATCAGAGAGTCAGTGTTTCAGAATGGGA TCTCTTAAAGCCCCTAGACGGGATGGTTAACAACCTATATTCTTCCGGTATTGGTGGCAAGTTGTGGGAGATTTTGTGAA TAAGTTTTTCGGATTCGATAACTACATGAGAAGTTAATGAAACATTCTTAATTCTCATCCCAAAGGTTGATAAGCATGAT AAGAATGATCAGTATAGACCTATAAGCTTGTGTAACGTTATATATAAACCGTTGATTAAGGTTATCCTGAATTGATTGAA AGCTGTTATGAACTCCCTCAAGAGACATAGTTGACTGATGTTATACCAATGTAGCTTCATTTATGTGAGACATAGTTCAG ATAGGGTTATGACATTTTTAAGCTTCATTTTCACA
CDS sequence (LotjaGi2g1v0222700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAGATGGTGGTGGCACCACCCCAACATCATAACCAACCATCTTTCTCTCCTTTGGCTTCCTCTCTTTCTGAATT CTCCTCACCAACTTTTCTAACTCAAATTCAGTTGAAAAGAAAAGTATGGCAGCCAAAAGGGTCATTTTCCGCCACAGCAT CAAGCCCCAAGAAAATGCTCATGATGGGGGGCAATAGGTTTACTGGTGTATTTTTGTCTAGGCTCTTTGTCAAAGAGGGT CACCAGGTCACTTTATGTACAAGAGGAGAAGTTCCTATCACCCAACATTTGCCTGATGAATCAGACAGTGATTGTGCTGA TTTTTCTTCCAAGTCTAAAGCTTTTGCAGTTCCAAGGAGGAAAGCAATGTCCTTGATCTTGTCAAGTTGTATTCTCTCAA AGGTTGGTTTGGCATTTGCTCAACAGCCTCCTGTATTCCGCGAGTACGTGGACACATTTGATGGTTACTCATTCAAGTAC CCTGGAAATTGGATCCAAGTCCGAGGTGCTGGGGCTGACATATTTTTCAGGGACCCTTATATCCTTGATGAAAATCTATC CCTTGAAATCTCTTCACCTTCATCTTCCCAATACAAGAGCGTTGAAGACTTGGGTCCACCCCAAGAAGCAGGAAAGAAAG TGCTCAAGCAGTATCTGACTGAATTTATGTCTACACGACTTGGCGTTAGGCGTGAAGCAAATGTTCTTTCCACATCTTCC AGAGTAGCTGATGATGGCAAGTTATACTATCAAGTTGAGGTAAACATAAAGTCATATGCTAGTAATAATGAGCTTGCTGT TATGCCACAAGACCGGGTGGTACGTCTGGAATGGGATCGGAGGTACCTATCCGTTCTAGGAGTTGAAAACAACCAACTCT ATGAGTTGAGATTGCAGACACCAGAAAATGTGTTTCAAGAGGAAGAGAGTGATCTTCGTCGAGTCATGGACTCATTTCGA GTGAACCAGATTGTTCGTTAG
Protein sequence (LotjaGi2g1v0222700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKMVVAPPQHHNQPSFSPLASSLSEFSSPTFLTQIQLKRKVWQPKGSFSATASSPKKMLMMGGNRFTGVFLSRLFVKEG HQVTLCTRGEVPITQHLPDESDSDCADFSSKSKAFAVPRRKAMSLILSSCILSKVGLAFAQQPPVFREYVDTFDGYSFKY PGNWIQVRGAGADIFFRDPYILDENLSLEISSPSSSQYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRREANVLSTSS RVADDGKLYYQVEVNIKSYASNNELAVMPQDRVVRLEWDRRYLSVLGVENNQLYELRLQTPENVFQEEESDLRRVMDSFR VNQIVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 103 | 324 | 222 | 1.9E-129 | – | |
| PANTHER | 103 | 324 | 222 | 1.9E-129 | – | |
| Gene3D | 140 | 322 | 183 | 7.6E-49 | ||
| Pfam | 146 | 321 | 176 | 4.8E-48 | ||
| SUPERFAMILY | 147 | 321 | 175 | 8.89E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Cellular component | Photosystem II | A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center. | ||
| Cellular component | Photosystem II oxygen evolving complex | A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ). | ||
| Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. | ||
| Cellular component | Extrinsic component of membrane | The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. |
Expression pattern of LotjaGi2g1v0222700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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