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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002683
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 27 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.358s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0185319.1
n.a. PREDICTED: psbP-like protein 2, chloroplastic-like [Cicer arietinum] gi|502121406|ref|XP_004497306.1| chr0 90179113 90180765 -
2 domain predictions
5 GO terms
Lj0g3v0317529.1
n.a. PREDICTED: psbP-like protein 2, chloroplastic-like [Glycine max] gi|356536494|ref|XP_003536772.1| chr0 165882639 165884518 +
2 domain predictions
5 GO terms
Lj1g3v1931390.1
n.a. PREDICTED: psbP domain-containing protein 5, chloroplastic-like [Glycine max] gi|356515500|ref|XP_003526438.1| chr1 22974295 22988268 +
2 domain predictions
5 GO terms
Lj1g3v3053810.1
n.a. PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic-like [Glycine max] gi|356557150|ref|XP_003546881.1| chr1 34862132 34863812 +
2 domain predictions
5 GO terms
Lj1g3v3194570.1
n.a. PREDICTED: psbP-like protein 1, chloroplastic-like [Glycine max] gi|356499671|ref|XP_003518660.1| chr1 36285849 36290261 -
2 domain predictions
5 GO terms
Lj1g3v3194570.2
n.a. PREDICTED: psbP-like protein 1, chloroplastic-like isoform X2 [Cicer arietinum] gi|502102481|ref|XP_004492089.1| chr1 36285849 36290255 -
2 domain predictions
5 GO terms
Lj1g3v3404330.1
n.a. PREDICTED: psbP domain-containing protein 3, chloroplastic-like [Glycine max] gi|356508481|ref|XP_003522985.1| chr1 39226102 39228684 +
2 domain predictions
5 GO terms
Lj1g3v4083160.1
n.a. PsbP domain-containing protein [Medicago truncatula] gi|357509231|ref|XP_003624904.1| chr1 48365637 48371671 +
2 domain predictions
5 GO terms
Lj2g3v3071910.1
n.a. PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic-like [Glycine max] gi|356526942|ref|XP_003532074.1| chr2 39530102 39532968 +
2 domain predictions
5 GO terms
Lj6g3v2156520.1
n.a. PREDICTED: psbP domain-containing protein 1, chloroplastic-like [Glycine max] gi|356505763|ref|XP_003521659.1| chr6 24925065 24927009 +
2 domain predictions
5 GO terms
Lj6g3v2156530.1
n.a. PREDICTED: LOW QUALITY PROTEIN: psbP domain-containing protein 1, chloroplastic-like [Glycine max] gi|356571066|ref|XP_003553702.1| chr6 24925431 24927550 +
2 domain predictions
5 GO terms
LotjaGi1g1v0046600.1
n.a. Oxygen-evolving enhancer protein 2-1, chloroplastic; TAIR: AT1G06680.1 photosystem II subunit P-1; Swiss-Prot: sp|Q7DM39|PSBP1_TOBAC Oxygen-evolving enhancer protein 2-1, chloroplastic; TrEMBL-Plants: tr|A0A151U238|A0A151U238_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0046600 LjG1.1_chr1 6357201 6361181 -
2 domain predictions
5 GO terms
LotjaGi1g1v0046600.2
n.a. Oxygen-evolving enhancer protein 2-1, chloroplastic; TAIR: AT1G06680.1 photosystem II subunit P-1; Swiss-Prot: sp|P16059|PSBP_PEA Oxygen-evolving enhancer protein 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9UVJ1|A0A0L9UVJ1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0046600 LjG1.1_chr1 6357798 6358951 -
2 domain predictions
5 GO terms
LotjaGi1g1v0272900.1
n.a. Photosystem II reaction center PsbP family protein; TAIR: AT1G77090.1 thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein); Swiss-Prot: sp|O49292|PPD4_ARATH PsbP domain-containing protein 4, chloroplastic; TrEMBL-Plants: tr|A0A151TSA0|A0A151TSA0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0272900 LjG1.1_chr1 66885332 66889039 -
2 domain predictions
5 GO terms
LotjaGi1g1v0389800.1
n.a. Photosystem II reaction center PsbP family protein; TAIR: AT5G11450.2 PsbP domain protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein); Swiss-Prot: sp|P82715|PPD5_ARATH PsbP domain-containing protein 5, chloroplastic; TrEMBL-Plants: tr|I3T9M5|I3T9M5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0389800 LjG1.1_chr1 87314235 87321528 +
2 domain predictions
5 GO terms
LotjaGi1g1v0517700.1
n.a. Lumenal PsbP-like protein; TAIR: AT3G63540.1 thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein); Swiss-Prot: sp|P82658|TL19_ARATH Thylakoid lumenal 19 kDa protein, chloroplastic; TrEMBL-Plants: tr|I1KTL9|I1KTL9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0517700 LjG1.1_chr1 104114584 104116049 +
2 domain predictions
5 GO terms
LotjaGi1g1v0533900.1
n.a. PsbP-like protein 1; TAIR: AT3G55330.1 PsbP-like protein 1; Swiss-Prot: sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic; TrEMBL-Plants: tr|I3S322|I3S322_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0533900 LjG1.1_chr1 106218712 106223564 -
2 domain predictions
5 GO terms
LotjaGi1g1v0533900.2
n.a. PsbP-like protein 1; TAIR: AT3G55330.1 PsbP-like protein 1; Swiss-Prot: sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic; TrEMBL-Plants: tr|I3S322|I3S322_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0533900 LjG1.1_chr1 106218712 106223564 -
2 domain predictions
5 GO terms
LotjaGi1g1v0569700.1
n.a. Photosystem II reaction center PsbP family protein; TAIR: AT1G76450.1 Photosystem II reaction center PsbP family protein; Swiss-Prot: sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3, chloroplastic; TrEMBL-Plants: tr|I3T8K8|I3T8K8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0569700 LjG1.1_chr1 110246313 110252412 +
2 domain predictions
5 GO terms
LotjaGi1g1v0658600.1
n.a. Photosystem II reaction center PsbP family protein; TAIR: AT3G56650.1 thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein); Swiss-Prot: sp|Q9LXX5|PPD6_ARATH PsbP domain-containing protein 6, chloroplastic; TrEMBL-Plants: tr|A0A1J7HRX1|A0A1J7HRX1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0658600 LjG1.1_chr1 121925645 121932932 +
2 domain predictions
5 GO terms
LotjaGi2g1v0222700.1
n.a. PsbP-domain protein 1; TAIR: AT4G15510.1 Photosystem II reaction center PsbP family protein; Swiss-Prot: sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic; TrEMBL-Plants: tr|I3SFZ1|I3SFZ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0222700 LjG1.1_chr2 67869736 67872730 -
2 domain predictions
5 GO terms
LotjaGi2g1v0222700.2
n.a. PsbP-like protein 1; TAIR: AT4G15510.1 Photosystem II reaction center PsbP family protein; Swiss-Prot: sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic; TrEMBL-Plants: tr|I3SFZ1|I3SFZ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0222700 LjG1.1_chr2 67869968 67872177 -
2 domain predictions
5 GO terms
LotjaGi2g1v0222700.3
n.a. PsbP-domain protein 1; TAIR: AT4G15510.1 Photosystem II reaction center PsbP family protein; Swiss-Prot: sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic; TrEMBL-Plants: tr|I3SFZ1|I3SFZ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0222700 LjG1.1_chr2 67869968 67872745 -
2 domain predictions
5 GO terms
LotjaGi5g1v0222100.1
n.a. PsbP family protein, expressed; TAIR: AT3G05410.2 Photosystem II reaction center PsbP family protein; Swiss-Prot: sp|F4J7A7|PPD7_ARATH PsbP domain-containing protein 7, chloroplastic; TrEMBL-Plants: tr|A0A151U4S5|A0A151U4S5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0222100 LjG1.1_chr5 52908337 52916977 +
2 domain predictions
5 GO terms
LotjaGi5g1v0222100.2
n.a. Photosystem II reaction center PsbP family protein; TAIR: AT3G05410.2 Photosystem II reaction center PsbP family protein; Swiss-Prot: sp|F4J7A7|PPD7_ARATH PsbP domain-containing protein 7, chloroplastic; TrEMBL-Plants: tr|A0A151U4S5|A0A151U4S5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0222100 LjG1.1_chr5 52908492 52909534 +
2 domain predictions
5 GO terms
LotjaGi5g1v0357400.1
n.a. PsbP-like protein 2; TAIR: AT2G39470.1 PsbP-like protein 2; Swiss-Prot: sp|O80634|PNSL1_ARATH Photosynthetic NDH subunit of lumenal location 1, chloroplastic; TrEMBL-Plants: tr|I3SJS5|I3SJS5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0357400 LjG1.1_chr5 67188989 67192438 +
2 domain predictions
5 GO terms
LotjaGi6g1v0184900.1
n.a. Oxygen-evolving enhancer 2-1, chloroplastic; TAIR: AT1G06680.1 photosystem II subunit P-1; Swiss-Prot: sp|P16059|PSBP_PEA Oxygen-evolving enhancer protein 2, chloroplastic; TrEMBL-Plants: tr|I3T637|I3T637_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0184900 LjG1.1_chr6 47909647 47913256 +
2 domain predictions
5 GO terms