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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0305200 |
| Transcript ID | LotjaGi2g1v0305200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi2g1v0305200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77854224..77857136) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAAATCCTATTGATCCTCTTATTCTCTCCCTTCATTATCCTCCTATTCTCTCCCTCGTTCATTCTCTTCAGTCTCTT ATTCATACATCAACGTCGAGGCATACATGCAAGAGAAATTGACTTGGATGTTGTGTTTCATTTTATTCAGATCCGCTCTT GGTTAAGGCTGCTAGGGGAGATCCTGTTAGTCGTCCTCCAGCATGGATGATGCGCCAGGCGGGAAGGTACATGGCTGTTT ACAGAAAGCTTGCTGAGAAGCATCCCTCATTTCGAGAGAGATCAGAGACAACTGATCTCATTGTGGAAATTTCTTTGCAG CCTTGGAAAGCTTTCAGGCCTGATGGAGTGATTATTTTCTCTGACATCCTTACACCTCTACCTGCATTTGGAATTGAATT TGACATAGAAGATGTAAAGGGACCTGTTATACAGTCACCTATTCGCTCTGAGGAGGGATTAAAGGCTTTGCACTCAATCG ACTTGGACAGACTTAGATTTGTTGGAGATTCACTTAAGCTCCTGCGCCAGGAGGTACAATATAGTTACATCAGCTCATCT GCGGTGTGTTTGGATTTCTGTTCTGAAAACTTAAATGTACTTTCAATGAAAATCCATGTCTCTGTAATGGATTGGGATGA AAGTTCTTTTAGATCAATGTAATGTAAATCCAAACACGCTTAGCCTGTTCCCATTTCTAATTCATTTTTTCTGTAGGTTG GTGGTCATGCTGCCGTTTTGGGTTTTGTGGGAGCACCTTGGACATTGGCAACATATATAGTGGAAGGGGGTACAACACGC ACTTACACAACCATTAAGAGCATGTGCCATACAGCACCAGACATATTGAGGACTCTGCTTTCTCATTTGTCACAGGCGAT AGCAGATTACATTGTTTTCCAAGTTGAATCTGGGGCTCACTGCATACAAATATTTGATTCTTGGGGTGGACAATTACCAC CTAGTATGTGGGAAAGCTGGTCAAAGCCTTATATCACCGAGGTAACTAAGGAAAATTCTTTCTTCCCTGATAATTTTGTG TTTTAATGTTTTAAACTTTTCAATGTTAAGCCTAACATTGGAAATTTTCTTCAGTTGAAGAAAGTAAAAATACATAGCTT GATGAGCTTTGCAAAAATTATTAGGTTTTATGTCAAGTTAATTTTGTATTGTTCCAAGCATCCATCATTATTCTTGGTTA GTTGACCTGGTAAAGAATATAATAAAAGCTTGTAATATGTAATTTCTCATGGGTAAAAAACCTTGCTATTTGTGAGCCTT GATTAATAAATGAGCTCATTGGAAGTTAATCATGCTTTTGACTTCAGGAGAGAGAAATCCAAATCAGAGGCGGTATCTTC ACATTTTTATAAATATAGTTGAGATAAATACTACTGTTAGTATCTTTTCTTATTTTACAATTGAATAAAATTAGCAAATT GAAGGTTGCATACTATCATGCCAATCTCCTCTTTTTATCCTTTTCATCACGCACTGCTTTTTGAACTTCCAGATTGTAAA AGTGGTCAAGAAAAAATGCCCCGAGACACCAATCGTTCTTTATATAAATGGAAATGGCGGCCTTCTCGAGCGTATGGTAG ACACTGGAGTTGATGTTATTGGACTAGACTGGACAGTGGATATGGCAGATGGAAGAAGAAGATTGGGTAGTGGGATAGGT GTGCAGGGAAATGTGGACCCTGCCTCCCTATTCTCCCCTCTTTCTTCCCTTACTGAAGAAATTCAGAGGTTGGTAACAAC ATATCTATGACCTTTGGTATTTTTTTATGTCATTCTGATAGGTACCAACAGTAAATGAGAAGAAAAATTGTTATTATTCA CCAATATCAATGAACTACAATTACTGGTTGTTTGAGAGAACCAGCACACTCCCTAGAATTCCCTTACTACAAACAAGACA CCCTAACTATTCTCATATCCCTCTTATTTATAGTCTTGCTTCACTCTCTCTAATCTCTAACCAACTCTCTAACTAACAAC ATGATTTCCCTAACTAACTAACTAAATAACTAAAGGGTGGTTATCTATCACAATCTATATGGTTGTTTGCATATTTGGTC TAAGGGAGCTACACCACTGAGTGGTGTCTAAGCTTAAGTGATGGGAGGAAGGGGAATCGGAAAGAGATTTTCCATCAGGG GGTGCTGAACCTGATACTGGGATGTTCCAGACAAATGTCCAGGCTGTATTGTTTCTGTCCATGATCCATTATCTAAGCTG TGTCGGTTGATACCTCCCCCAACATTTGCCTATTAACGGCAGAACTGAAAATAATGATACGAGTCAGGGAAACTGGCCAA GAATCAGGCAATATTCTTTATCTTGTTCACGAAGCTACAATATGTAACTTTTACTCTCGACATGCATTGGATTCTGTGTC AAACTGGCAGCCATACGTGTAGTATGTGTGTTTGGATGCACTGCAGGCACAAAACCCAGTGTGTTAAATGTAAAAACTGT GTCATAACTTCATTTTATGTGATTCTAGCATATTATGAAGTGCATCCCAACATTCTATTTGTTTCAAAATTATGAATTGG TTCAATTGGACTATTGTGCATTTGTGCTTTTTGAGAGAAAGACCACTGTTTTGTCTGACTCGGTGGCAGAGGATGATACC AGTGTGTCCAATTGAACCCTCATAGAGTCATAGTCATACATGAGAATGGATACATGACTTGTCTAATTAGTTTTCTTAAC TTCTAATATGATAATTATTTTCAGGGTTGTGAAGTGTGCGGGGCCTAGAGGGCACATCCTTAATCTTGGGCACGGTGTTC TTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCAAGGAGCTTGAAATTCGACACACACTTTCAGAAT ACAACTGCAAATGATCCTGAACTTGTAATTTAA
CDS sequence (LotjaGi2g1v0305200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCGCCAGGCGGGAAGGTACATGGCTGTTTACAGAAAGCTTGCTGAGAAGCATCCCTCATTTCGAGAGAGATCAGA GACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGAAAGCTTTCAGGCCTGATGGAGTGATTATTTTCTCTGACA TCCTTACACCTCTACCTGCATTTGGAATTGAATTTGACATAGAAGATGTAAAGGGACCTGTTATACAGTCACCTATTCGC TCTGAGGAGGGATTAAAGGCTTTGCACTCAATCGACTTGGACAGACTTAGATTTGTTGGAGATTCACTTAAGCTCCTGCG CCAGGAGGTTGGTGGTCATGCTGCCGTTTTGGGTTTTGTGGGAGCACCTTGGACATTGGCAACATATATAGTGGAAGGGG GTACAACACGCACTTACACAACCATTAAGAGCATGTGCCATACAGCACCAGACATATTGAGGACTCTGCTTTCTCATTTG TCACAGGCGATAGCAGATTACATTGTTTTCCAAGTTGAATCTGGGGCTCACTGCATACAAATATTTGATTCTTGGGGTGG ACAATTACCACCTAGTATGTGGGAAAGCTGGTCAAAGCCTTATATCACCGAGATTGTAAAAGTGGTCAAGAAAAAATGCC CCGAGACACCAATCGTTCTTTATATAAATGGAAATGGCGGCCTTCTCGAGCGTATGGTAGACACTGGAGTTGATGTTATT GGACTAGACTGGACAGTGGATATGGCAGATGGAAGAAGAAGATTGGGTAGTGGGATAGGTGTGCAGGGAAATGTGGACCC TGCCTCCCTATTCTCCCCTCTTTCTTCCCTTACTGAAGAAATTCAGAGCCATACGTGTAGTATGTGTGTTTGGATGCACT GCAGGCACAAAACCCAGGTTGTGAAGTGTGCGGGGCCTAGAGGGCACATCCTTAATCTTGGGCACGGTGTTCTTGTTGGC ACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCAAGGAGCTTGAAATTCGACACACACTTTCAGAATACAACTGC AAATGATCCTGAACTTGTAATTTAA
Protein sequence (LotjaGi2g1v0305200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGIEFDIEDVKGPVIQSPIR SEEGLKALHSIDLDRLRFVGDSLKLLRQEVGGHAAVLGFVGAPWTLATYIVEGGTTRTYTTIKSMCHTAPDILRTLLSHL SQAIADYIVFQVESGAHCIQIFDSWGGQLPPSMWESWSKPYITEIVKVVKKKCPETPIVLYINGNGGLLERMVDTGVDVI GLDWTVDMADGRRRLGSGIGVQGNVDPASLFSPLSSLTEEIQSHTCSMCVWMHCRHKTQVVKCAGPRGHILNLGHGVLVG TPEEAVAHFFEVARSLKFDTHFQNTTANDPELVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 349 | 349 | 6.7E-211 | – | |
| PANTHER | 1 | 349 | 349 | 6.7E-211 | – | |
| Pfam | 1 | 335 | 335 | 2.2E-99 | ||
| TIGRFAM | 1 | 334 | 334 | 3.5E-110 | ||
| CDD | 1 | 335 | 335 | 6.83089E-159 | ||
| SUPERFAMILY | 1 | 337 | 337 | 1.96E-88 | ||
| Gene3D | 1 | 338 | 338 | 2.8E-116 | ||
| ProSitePatterns | 117 | 133 | 17 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Uroporphyrinogen decarboxylase activity | Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2. | ||
| Biological process | Porphyrin-containing compound biosynthetic process | The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. |
Expression pattern of LotjaGi2g1v0305200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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