Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0305200 |
| Transcript ID | LotjaGi2g1v0305200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi2g1v0305200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77854224..77857146) extracted from Lotus japonicus Gifu genome v1.2.
TTTAAAACTTCAAAAAATCCTATTGATCCTCTTATTCTCTCCCTTCATTATCCTCCTATTCTCTCCCTCGTTCATTCTCT TCAGTCTCTTATTCATACATCAACGTCGAGGCATACATGCAAGAGAAATTGACTTGGATGTTGTGTTTCATTTTATTCAG ATCCGCTCTTGGTTAAGGCTGCTAGGGGAGATCCTGTTAGTCGTCCTCCAGCATGGATGATGCGCCAGGCGGGAAGGTAC ATGGCTGTTTACAGAAAGCTTGCTGAGAAGCATCCCTCATTTCGAGAGAGATCAGAGACAACTGATCTCATTGTGGAAAT TTCTTTGCAGCCTTGGAAAGCTTTCAGGCCTGATGGAGTGATTATTTTCTCTGACATCCTTACACCTCTACCTGCATTTG GAATTGAATTTGACATAGAAGATGTAAAGGGACCTGTTATACAGTCACCTATTCGCTCTGAGGAGGGATTAAAGGCTTTG CACTCAATCGACTTGGACAGACTTAGATTTGTTGGAGATTCACTTAAGCTCCTGCGCCAGGAGGTACAATATAGTTACAT CAGCTCATCTGCGGTGTGTTTGGATTTCTGTTCTGAAAACTTAAATGTACTTTCAATGAAAATCCATGTCTCTGTAATGG ATTGGGATGAAAGTTCTTTTAGATCAATGTAATGTAAATCCAAACACGCTTAGCCTGTTCCCATTTCTAATTCATTTTTT CTGTAGGTTGGTGGTCATGCTGCCGTTTTGGGTTTTGTGGGAGCACCTTGGACATTGGCAACATATATAGTGGAAGGGGG TACAACACGCACTTACACAACCATTAAGAGCATGTGCCATACAGCACCAGACATATTGAGGACTCTGCTTTCTCATTTGT CACAGGCGATAGCAGATTACATTGTTTTCCAAGTTGAATCTGGGGCTCACTGCATACAAATATTTGATTCTTGGGGTGGA CAATTACCACCTAGTATGTGGGAAAGCTGGTCAAAGCCTTATATCACCGAGGTAACTAAGGAAAATTCTTTCTTCCCTGA TAATTTTGTGTTTTAATGTTTTAAACTTTTCAATGTTAAGCCTAACATTGGAAATTTTCTTCAGTTGAAGAAAGTAAAAA TACATAGCTTGATGAGCTTTGCAAAAATTATTAGGTTTTATGTCAAGTTAATTTTGTATTGTTCCAAGCATCCATCATTA TTCTTGGTTAGTTGACCTGGTAAAGAATATAATAAAAGCTTGTAATATGTAATTTCTCATGGGTAAAAAACCTTGCTATT TGTGAGCCTTGATTAATAAATGAGCTCATTGGAAGTTAATCATGCTTTTGACTTCAGGAGAGAGAAATCCAAATCAGAGG CGGTATCTTCACATTTTTATAAATATAGTTGAGATAAATACTACTGTTAGTATCTTTTCTTATTTTACAATTGAATAAAA TTAGCAAATTGAAGGTTGCATACTATCATGCCAATCTCCTCTTTTTATCCTTTTCATCACGCACTGCTTTTTGAACTTCC AGATTGTAAAAGTGGTCAAGAAAAAATGCCCCGAGACACCAATCGTTCTTTATATAAATGGAAATGGCGGCCTTCTCGAG CGTATGGTAGACACTGGAGTTGATGTTATTGGACTAGACTGGACAGTGGATATGGCAGATGGAAGAAGAAGATTGGGTAG TGGGATAGGTGTGCAGGGAAATGTGGACCCTGCCTCCCTATTCTCCCCTCTTTCTTCCCTTACTGAAGAAATTCAGAGGT TGGTAACAACATATCTATGACCTTTGGTATTTTTTTATGTCATTCTGATAGGTACCAACAGTAAATGAGAAGAAAAATTG TTATTATTCACCAATATCAATGAACTACAATTACTGGTTGTTTGAGAGAACCAGCACACTCCCTAGAATTCCCTTACTAC AAACAAGACACCCTAACTATTCTCATATCCCTCTTATTTATAGTCTTGCTTCACTCTCTCTAATCTCTAACCAACTCTCT AACTAACAACATGATTTCCCTAACTAACTAACTAAATAACTAAAGGGTGGTTATCTATCACAATCTATATGGTTGTTTGC ATATTTGGTCTAAGGGAGCTACACCACTGAGTGGTGTCTAAGCTTAAGTGATGGGAGGAAGGGGAATCGGAAAGAGATTT TCCATCAGGGGGTGCTGAACCTGATACTGGGATGTTCCAGACAAATGTCCAGGCTGTATTGTTTCTGTCCATGATCCATT ATCTAAGCTGTGTCGGTTGATACCTCCCCCAACATTTGCCTATTAACGGCAGAACTGAAAATAATGATACGAGTCAGGGA AACTGGCCAAGAATCAGGCAATATTCTTTATCTTGTTCACGAAGCTACAATATGTAACTTTTACTCTCGACATGCATTGG ATTCTGTGTCAAACTGGCAGCCATACGTGTAGTATGTGTGTTTGGATGCACTGCAGGCACAAAACCCAGTGTGTTAAATG TAAAAACTGTGTCATAACTTCATTTTATGTGATTCTAGCATATTATGAAGTGCATCCCAACATTCTATTTGTTTCAAAAT TATGAATTGGTTCAATTGGACTATTGTGCATTTGTGCTTTTTGAGAGAAAGACCACTGTTTTGTCTGACTCGGTGGCAGA GGATGATACCAGTGTGTCCAATTGAACCCTCATAGAGTCATAGTCATACATGAGAATGGATACATGACTTGTCTAATTAG TTTTCTTAACTTCTAATATGATAATTATTTTCAGGGTTGTGAAGTGTGCGGGGCCTAGAGGGCACATCCTTAATCTTGGG CACGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCAAGGAGCTTGAAATTCGACACACA CTTTCAGAATACAACTGCAAATGATCCTGAACTTGTAATTTAA
CDS sequence (LotjaGi2g1v0305200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCGCCAGGCGGGAAGGTACATGGCTGTTTACAGAAAGCTTGCTGAGAAGCATCCCTCATTTCGAGAGAGATCAGA GACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGAAAGCTTTCAGGCCTGATGGAGTGATTATTTTCTCTGACA TCCTTACACCTCTACCTGCATTTGGAATTGAATTTGACATAGAAGATGTAAAGGGACCTGTTATACAGTCACCTATTCGC TCTGAGGAGGGATTAAAGGCTTTGCACTCAATCGACTTGGACAGACTTAGATTTGTTGGAGATTCACTTAAGCTCCTGCG CCAGGAGGTTGGTGGTCATGCTGCCGTTTTGGGTTTTGTGGGAGCACCTTGGACATTGGCAACATATATAGTGGAAGGGG GTACAACACGCACTTACACAACCATTAAGAGCATGTGCCATACAGCACCAGACATATTGAGGACTCTGCTTTCTCATTTG TCACAGGCGATAGCAGATTACATTGTTTTCCAAGTTGAATCTGGGGCTCACTGCATACAAATATTTGATTCTTGGGGTGG ACAATTACCACCTAGTATGTGGGAAAGCTGGTCAAAGCCTTATATCACCGAGATTGTAAAAGTGGTCAAGAAAAAATGCC CCGAGACACCAATCGTTCTTTATATAAATGGAAATGGCGGCCTTCTCGAGCGTATGGTAGACACTGGAGTTGATGTTATT GGACTAGACTGGACAGTGGATATGGCAGATGGAAGAAGAAGATTGGGTAGTGGGATAGGTGTGCAGGGAAATGTGGACCC TGCCTCCCTATTCTCCCCTCTTTCTTCCCTTACTGAAGAAATTCAGAGGGTTGTGAAGTGTGCGGGGCCTAGAGGGCACA TCCTTAATCTTGGGCACGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCAAGGAGCTTG AAATTCGACACACACTTTCAGAATACAACTGCAAATGATCCTGAACTTGTAATTTAA
Protein sequence (LotjaGi2g1v0305200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGIEFDIEDVKGPVIQSPIR SEEGLKALHSIDLDRLRFVGDSLKLLRQEVGGHAAVLGFVGAPWTLATYIVEGGTTRTYTTIKSMCHTAPDILRTLLSHL SQAIADYIVFQVESGAHCIQIFDSWGGQLPPSMWESWSKPYITEIVKVVKKKCPETPIVLYINGNGGLLERMVDTGVDVI GLDWTVDMADGRRRLGSGIGVQGNVDPASLFSPLSSLTEEIQRVVKCAGPRGHILNLGHGVLVGTPEEAVAHFFEVARSL KFDTHFQNTTANDPELVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 333 | 333 | 6.5E-215 | – | |
| PANTHER | 1 | 333 | 333 | 6.5E-215 | – | |
| Pfam | 1 | 319 | 319 | 3.3E-103 | ||
| CDD | 1 | 319 | 319 | 4.78203E-162 | ||
| TIGRFAM | 1 | 318 | 318 | 2.7E-115 | ||
| Gene3D | 1 | 322 | 322 | 5.7E-121 | ||
| SUPERFAMILY | 1 | 321 | 321 | 8.5E-94 | ||
| ProSitePatterns | 117 | 133 | 17 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Uroporphyrinogen decarboxylase activity | Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2. | ||
| Biological process | Porphyrin-containing compound biosynthetic process | The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. |
Expression pattern of LotjaGi2g1v0305200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…