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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0317100 |
Transcript ID | LotjaGi2g1v0317100.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Trichome birefringence-like protein; TAIR: AT1G70230.1 TRICHOME BIREFRINGENCE-LIKE 27; Swiss-Prot: sp|O04523|TBL27_ARATH Protein ALTERED XYLOGLUCAN 4; TrEMBL-Plants: tr|I1JC00|I1JC00_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0317100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79234543..79236302) extracted from Lotus japonicus Gifu genome v1.2.
CATGACTTTCTTCACTTTCACTGACCTTAATTTACAATCCAATAACAAGCAAATTAAAATTCTCTCTTCACTATCCCTTC AGTTTCGTGTACTGGCTTTCATATTTACTCTCAAACTCTCAAGTAAGTAGTAAGCACTTGCATAGAAGCATGTAATAATT GAACGCTCTCTGTCTCATTCTTTAATTTAGCAGAAAATAAAGCAGGAAAGAATGAATGCCTTCCTCAAAATGAGAAGTGC AAAAGCATTCAAATTCCAATCCCTCTCCCTCACCTGGAGTCTTATTCCCTGCACATTTCTAGCACTGCTTTGTTTATACT TTTTCCCTCACTCAAATCCTCTCCTTTCTCCTCCTTCTTCTTATTCAGGTATGCATATACATTATACATACATAATTTTG TCGTCTTAACGTTATTAGAATGTTACAAGTGCAACTGGATTTGTTCTAAGCTTATCAAGTTAATTAGCAGGAACGAACAA AGCAGCTGCATACAAGAAACAATGTGACTACTTCAATGGAAATTGGATTCCTGACAGGACAGGCCCATTGTACAATGGTA CAACCTGTGGTACAATCCAAGAAAGCCATAACTGCATCACCAATGGAAGGCCTGACTCTGACTTTCTTTACTGGAGATGG AAACCTAGGAGGTGCAATCTTCCAAGGTTTGAACCCAACACTTTTCTCCAACTCATTAGGAACAAGCATGTAGCTTTTGT TGGAGACTCTCTAGCTAGGAACCAATTAGAGTCCCTTCTTTGCTTGCTAGCCACTACTTCAACACCTAAGAATCACCCCA GGAAACGTTCTTTGGGTTGGTGGCATTTTGCTTCTCACAATGCAACATTATCATCATATTGGGCACCATTTCTTGTGCAA GGTGTTCAAAGACAACTTAAAGGGCCAGGACCACGTCATAATACAATGTATTTGGATCAAGTTAATGAGAGGTGGGCCAA GAACATGGATCAAATGGATTTAATTGTTCTTGGATTTGGCCATTGGTTTGTGAAAACTCCTTCAATTTACTATGAGGCTG GTTCAGTTTTAGGTTGCCAAAACTTTCCTGCTCTTAATTGTACTGATATTGTCTTTTATGGTCCATTAAGAAAAGCTTTA AGGACTGCACTCAATAGCATAATTGAGAGGAAAGCAGCGAAAGGAAATGGAGGTGGTGTCATTGTGAGAACATACTCACC TTCTCACTTTAAAGGTACTTGGGATAAGGGTGGTACTTGTTCAATGACTAAACCTTATGAAAAAGAGGAGAAGAAACTTC AAAAAAGGGATGCTAAGATTAGAAGGATTGGAATAGAAGAATTGGAAAATGCTAAGGAAAAAGCCAAACAATGTGGAGGG TTTAGATTTGAAGTATTAGATGTGACCAAATTAGCATTAATGAGACCAGATGGCCACCCTGGCCCTTATATGAATCCATA CCCATTTTCTAAAGGGGTTCCAGAGCGCGTGCCGAGTGATTGTTCTCATTGGTGCTTGCCAGGGCCTATAGACACGTGGA ATGAGATTTTTCTCGAGATGATGAAGTGGGAGGAAAAAGAGTGAAGACTAGTGAGGCCTTCCTCCTCTCATCATATTAAT AATTTATTAGTTTTGTTTACTGTGTACTAAAAAAAATCTGGTTCACACATTTTTCTGTAAATTAATTTTAGCACATAAGC GTATTATAAATAACATGTATTAAATGCATTTATGAACTTCTAACTTCATTGTAATTCATTAAATTATCCATAAATTTTAC
CDS sequence (LotjaGi2g1v0317100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGCCTTCCTCAAAATGAGAAGTGCAAAAGCATTCAAATTCCAATCCCTCTCCCTCACCTGGAGTCTTATTCCCTG CACATTTCTAGCACTGCTTTGTTTATACTTTTTCCCTCACTCAAATCCTCTCCTTTCTCCTCCTTCTTCTTATTCAGGAA CGAACAAAGCAGCTGCATACAAGAAACAATGTGACTACTTCAATGGAAATTGGATTCCTGACAGGACAGGCCCATTGTAC AATGGTACAACCTGTGGTACAATCCAAGAAAGCCATAACTGCATCACCAATGGAAGGCCTGACTCTGACTTTCTTTACTG GAGATGGAAACCTAGGAGGTGCAATCTTCCAAGGTTTGAACCCAACACTTTTCTCCAACTCATTAGGAACAAGCATGTAG CTTTTGTTGGAGACTCTCTAGCTAGGAACCAATTAGAGTCCCTTCTTTGCTTGCTAGCCACTACTTCAACACCTAAGAAT CACCCCAGGAAACGTTCTTTGGGTTGGTGGCATTTTGCTTCTCACAATGCAACATTATCATCATATTGGGCACCATTTCT TGTGCAAGGTGTTCAAAGACAACTTAAAGGGCCAGGACCACGTCATAATACAATGTATTTGGATCAAGTTAATGAGAGGT GGGCCAAGAACATGGATCAAATGGATTTAATTGTTCTTGGATTTGGCCATTGGTTTGTGAAAACTCCTTCAATTTACTAT GAGGCTGGTTCAGTTTTAGGTTGCCAAAACTTTCCTGCTCTTAATTGTACTGATATTGTCTTTTATGGTCCATTAAGAAA AGCTTTAAGGACTGCACTCAATAGCATAATTGAGAGGAAAGCAGCGAAAGGAAATGGAGGTGGTGTCATTGTGAGAACAT ACTCACCTTCTCACTTTAAAGGTACTTGGGATAAGGGTGGTACTTGTTCAATGACTAAACCTTATGAAAAAGAGGAGAAG AAACTTCAAAAAAGGGATGCTAAGATTAGAAGGATTGGAATAGAAGAATTGGAAAATGCTAAGGAAAAAGCCAAACAATG TGGAGGGTTTAGATTTGAAGTATTAGATGTGACCAAATTAGCATTAATGAGACCAGATGGCCACCCTGGCCCTTATATGA ATCCATACCCATTTTCTAAAGGGGTTCCAGAGCGCGTGCCGAGTGATTGTTCTCATTGGTGCTTGCCAGGGCCTATAGAC ACGTGGAATGAGATTTTTCTCGAGATGATGAAGTGGGAGGAAAAAGAGTGA
Protein sequence (LotjaGi2g1v0317100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNAFLKMRSAKAFKFQSLSLTWSLIPCTFLALLCLYFFPHSNPLLSPPSSYSGTNKAAAYKKQCDYFNGNWIPDRTGPLY NGTTCGTIQESHNCITNGRPDSDFLYWRWKPRRCNLPRFEPNTFLQLIRNKHVAFVGDSLARNQLESLLCLLATTSTPKN HPRKRSLGWWHFASHNATLSSYWAPFLVQGVQRQLKGPGPRHNTMYLDQVNERWAKNMDQMDLIVLGFGHWFVKTPSIYY EAGSVLGCQNFPALNCTDIVFYGPLRKALRTALNSIIERKAAKGNGGGVIVRTYSPSHFKGTWDKGGTCSMTKPYEKEEK KLQKRDAKIRRIGIEELENAKEKAKQCGGFRFEVLDVTKLALMRPDGHPGPYMNPYPFSKGVPERVPSDCSHWCLPGPID TWNEIFLEMMKWEEKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_POSITIVE | 1 | 12 | 12 | - | – | |
Phobius | 1 | 19 | 19 | - | – | |
PANTHER | 18 | 413 | 396 | 1.8E-176 | – | |
PANTHER | 18 | 413 | 396 | 1.8E-176 | ||
Phobius | 20 | 38 | 19 | - | – | |
TMHMM | 20 | 39 | 20 | - | – | |
Phobius | 39 | 416 | 378 | - | – | |
Pfam | 62 | 115 | 54 | 5.4E-22 | ||
Pfam | 116 | 409 | 294 | 1.9E-87 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0317100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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