Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0317100 |
| Transcript ID | LotjaGi2g1v0317100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT1G70230.1 TRICHOME BIREFRINGENCE-LIKE 27; Swiss-Prot: sp|O04523|TBL27_ARATH Protein ALTERED XYLOGLUCAN 4; TrEMBL-Plants: tr|I1JC00|I1JC00_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0317100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79234543..79236302) extracted from Lotus japonicus Gifu genome v1.2.
CATGACTTTCTTCACTTTCACTGACCTTAATTTACAATCCAATAACAAGCAAATTAAAATTCTCTCTTCACTATCCCTTC AGTTTCGTGTACTGGCTTTCATATTTACTCTCAAACTCTCAAGTAAGTAGTAAGCACTTGCATAGAAGCATGTAATAATT GAACGCTCTCTGTCTCATTCTTTAATTTAGCAGAAAATAAAGCAGGAAAGAATGAATGCCTTCCTCAAAATGAGAAGTGC AAAAGCATTCAAATTCCAATCCCTCTCCCTCACCTGGAGTCTTATTCCCTGCACATTTCTAGCACTGCTTTGTTTATACT TTTTCCCTCACTCAAATCCTCTCCTTTCTCCTCCTTCTTCTTATTCAGGTATGCATATACATTATACATACATAATTTTG TCGTCTTAACGTTATTAGAATGTTACAAGTGCAACTGGATTTGTTCTAAGCTTATCAAGTTAATTAGCAGGAACGAACAA AGCAGCTGCATACAAGAAACAATGTGACTACTTCAATGGAAATTGGATTCCTGACAGGACAGGCCCATTGTACAATGGTA CAACCTGTGGTACAATCCAAGAAAGCCATAACTGCATCACCAATGGAAGGCCTGACTCTGACTTTCTTTACTGGAGATGG AAACCTAGGAGGTGCAATCTTCCAAGGTTTGAACCCAACACTTTTCTCCAACTCATTAGGAACAAGCATGTAGCTTTTGT TGGAGACTCTCTAGCTAGGAACCAATTAGAGTCCCTTCTTTGCTTGCTAGCCACTACTTCAACACCTAAGAATCACCCCA GGAAACGTTCTTTGGGTTGGTGGCATTTTGCTTCTCACAATGCAACATTATCATCATATTGGGCACCATTTCTTGTGCAA GGTGTTCAAAGACAACTTAAAGGGCCAGGACCACGTCATAATACAATGTATTTGGATCAAGTTAATGAGAGGTGGGCCAA GAACATGGATCAAATGGATTTAATTGTTCTTGGATTTGGCCATTGGTTTGTGAAAACTCCTTCAATTTACTATGAGGCTG GTTCAGTTTTAGGTTGCCAAAACTTTCCTGCTCTTAATTGTACTGATATTGTCTTTTATGGTCCATTAAGAAAAGCTTTA AGGACTGCACTCAATAGCATAATTGAGAGGAAAGCAGCGAAAGGAAATGGAGGTGGTGTCATTGTGAGAACATACTCACC TTCTCACTTTAAAGGTACTTGGGATAAGGGTGGTACTTGTTCAATGACTAAACCTTATGAAAAAGAGGAGAAGAAACTTC AAAAAAGGGATGCTAAGATTAGAAGGATTGGAATAGAAGAATTGGAAAATGCTAAGGAAAAAGCCAAACAATGTGGAGGG TTTAGATTTGAAGTATTAGATGTGACCAAATTAGCATTAATGAGACCAGATGGCCACCCTGGCCCTTATATGAATCCATA CCCATTTTCTAAAGGGGTTCCAGAGCGCGTGCCGAGTGATTGTTCTCATTGGTGCTTGCCAGGGCCTATAGACACGTGGA ATGAGATTTTTCTCGAGATGATGAAGTGGGAGGAAAAAGAGTGAAGACTAGTGAGGCCTTCCTCCTCTCATCATATTAAT AATTTATTAGTTTTGTTTACTGTGTACTAAAAAAAATCTGGTTCACACATTTTTCTGTAAATTAATTTTAGCACATAAGC GTATTATAAATAACATGTATTAAATGCATTTATGAACTTCTAACTTCATTGTAATTCATTAAATTATCCATAAATTTTAC
CDS sequence (LotjaGi2g1v0317100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGCCTTCCTCAAAATGAGAAGTGCAAAAGCATTCAAATTCCAATCCCTCTCCCTCACCTGGAGTCTTATTCCCTG CACATTTCTAGCACTGCTTTGTTTATACTTTTTCCCTCACTCAAATCCTCTCCTTTCTCCTCCTTCTTCTTATTCAGGAA CGAACAAAGCAGCTGCATACAAGAAACAATGTGACTACTTCAATGGAAATTGGATTCCTGACAGGACAGGCCCATTGTAC AATGGTACAACCTGTGGTACAATCCAAGAAAGCCATAACTGCATCACCAATGGAAGGCCTGACTCTGACTTTCTTTACTG GAGATGGAAACCTAGGAGGTGCAATCTTCCAAGGTTTGAACCCAACACTTTTCTCCAACTCATTAGGAACAAGCATGTAG CTTTTGTTGGAGACTCTCTAGCTAGGAACCAATTAGAGTCCCTTCTTTGCTTGCTAGCCACTACTTCAACACCTAAGAAT CACCCCAGGAAACGTTCTTTGGGTTGGTGGCATTTTGCTTCTCACAATGCAACATTATCATCATATTGGGCACCATTTCT TGTGCAAGGTGTTCAAAGACAACTTAAAGGGCCAGGACCACGTCATAATACAATGTATTTGGATCAAGTTAATGAGAGGT GGGCCAAGAACATGGATCAAATGGATTTAATTGTTCTTGGATTTGGCCATTGGTTTGTGAAAACTCCTTCAATTTACTAT GAGGCTGGTTCAGTTTTAGGTTGCCAAAACTTTCCTGCTCTTAATTGTACTGATATTGTCTTTTATGGTCCATTAAGAAA AGCTTTAAGGACTGCACTCAATAGCATAATTGAGAGGAAAGCAGCGAAAGGAAATGGAGGTGGTGTCATTGTGAGAACAT ACTCACCTTCTCACTTTAAAGGTACTTGGGATAAGGGTGGTACTTGTTCAATGACTAAACCTTATGAAAAAGAGGAGAAG AAACTTCAAAAAAGGGATGCTAAGATTAGAAGGATTGGAATAGAAGAATTGGAAAATGCTAAGGAAAAAGCCAAACAATG TGGAGGGTTTAGATTTGAAGTATTAGATGTGACCAAATTAGCATTAATGAGACCAGATGGCCACCCTGGCCCTTATATGA ATCCATACCCATTTTCTAAAGGGGTTCCAGAGCGCGTGCCGAGTGATTGTTCTCATTGGTGCTTGCCAGGGCCTATAGAC ACGTGGAATGAGATTTTTCTCGAGATGATGAAGTGGGAGGAAAAAGAGTGA
Protein sequence (LotjaGi2g1v0317100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNAFLKMRSAKAFKFQSLSLTWSLIPCTFLALLCLYFFPHSNPLLSPPSSYSGTNKAAAYKKQCDYFNGNWIPDRTGPLY NGTTCGTIQESHNCITNGRPDSDFLYWRWKPRRCNLPRFEPNTFLQLIRNKHVAFVGDSLARNQLESLLCLLATTSTPKN HPRKRSLGWWHFASHNATLSSYWAPFLVQGVQRQLKGPGPRHNTMYLDQVNERWAKNMDQMDLIVLGFGHWFVKTPSIYY EAGSVLGCQNFPALNCTDIVFYGPLRKALRTALNSIIERKAAKGNGGGVIVRTYSPSHFKGTWDKGGTCSMTKPYEKEEK KLQKRDAKIRRIGIEELENAKEKAKQCGGFRFEVLDVTKLALMRPDGHPGPYMNPYPFSKGVPERVPSDCSHWCLPGPID TWNEIFLEMMKWEEKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 12 | 12 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 18 | 413 | 396 | 1.8E-176 | – | |
| PANTHER | 18 | 413 | 396 | 1.8E-176 | ||
| Phobius | 20 | 38 | 19 | - | – | |
| TMHMM | 20 | 39 | 20 | - | – | |
| Phobius | 39 | 416 | 378 | - | – | |
| Pfam | 62 | 115 | 54 | 5.4E-22 | ||
| Pfam | 116 | 409 | 294 | 1.9E-87 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0317100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…