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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0328900 |
| Transcript ID | LotjaGi2g1v0328900.2 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TMU0|A0A0L9TMU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80419819..80424239) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATTCTCTGCCTTCATCTTTAGGATCCAATTAGCTATAAATACAATACACAAACCATGTTATGCAGTCGTAGCTTGC TCTGGCTCTTGTGTTCTCTCCTCTTTCCTGTAACACAGCCTTCTCCCTCACTGATATAAAAAACCATGGCTTCCTGTGGC GCCTTCCTTAAGCCAAACCACTCTCTGCTTCCATGCCATAAAACTTCAAGTCCAAAGCATGATAGCATAAAACAGGTTGG TGAATCACACTTACTCAAAAGAATGAGTAATGTCACAAGAGACTCTTACACACCACTTCACTTCTGTTTCATTTGCCATT TATGATCAAACAATTAGACACCATTTCTCTAAGTATATGGTTTTCTTATTTGTTTTATGTTAATCTATTTTGGTTTTCAT AATTCACTGTTATAATTGCTTTTTCTTACCAAAGACCATGTAATAATGATAATGATGTATGTTTGCAATTCTATCAGTTC TGTGTGAGAGCTTCAGCTAGTAGCACCGATGATGGGGAAAGGACAATTATAAGGAAAGAGAAAGATGAGTGGAAGATCAA ATACTCAAGCAAGAAACCAGTAACCCCTTTGCTGGACACAATCAACTACCCAGCTCATATGAAGAATCTTTCCACACAGG TAAACCATTTGAAACTGGTTATCATTTAATTAGTCTTGGAGGCCATGTGAACTGAAGATCTTGCATAAATTTATTCAATC TAAATCACAAGTTATATTAAAATAATAACAAAGATATAAAAATTCAAACTATATTCATTTGAATACTAGTTTAGGCTTTT GATTGGTTAAAAGAAATAGTCAAACAGACACTGTACTGTATTTATGCAAGAATAATTCTGAAATGTTACCTATCCAGGCT GGTGCATCAGTTATTTGTCTCTAGTTAGTTTCTGATTTTTTGTCTTTAAAACATTATGCATGTATTTGTCAGGATCTTGA ACAACTTGCTGCAGAGCTAAGGGCAGACATTGTACACACTGTTTCCAACTCTGGTGGGCATCTTAGCTCAAGCTTAGGAG TAGTGGAATTAACAGTGGCTCTGCATCATGTTTTCAACACCCCAGAAGACAAGATTATATGGGATGTGGGGCACCAGGTC AGTCTATGATTCTCTTCTTTGTTCCTGTTTCTGAATAGAAATCAAATGGAATAATAAAAAGGTAACTTAAACTGCATTCA TGCAGTGAAATTTGCAAATTTGCTCTTACAAAGAAATTTATGGCATGTTCGATTACTGGTTTGTGAAACATAAACATGAA AGAAGGATTTGATTTTAACAATTAAAAATTGAGGGGCTATCAAAAAATTATTGGGGGATCAAAATCATACATCAACCGTA TTAAAGGGACCAAAAGCGCAATTAAGAAAGAAAAACTTGTTTGGTAGGAATTGTATTGAAAAATTAATTTTAAAAATAGA TTTTGTTTTTAGTTTTTAAAACTAAAATTTAAAAAATATTTCATGGCTTTTTCTGTTTTTAATTTTCCAGCCATAAGTTT TTAACTTCACAAAATATCTCATTCAAGCCGTTTTTCTTATGAAAAATATTTTTTTAAACTTGTTTCTGAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAACTTAAAAATTGATAAGAGAACCAAAGAAGCCCTTCATCTTTATTTCCCTTTTTACA TGTCTTTTCTATAGCTGTCAAGTGTCACTTATTGTGTAAGATGGTCTCAGATGCAATAAAATTGCAGGCATATGCACACA AGATTCTCACAGGTAGAAGGTCTAGGATGCCCACTATTAGGAAAACCTTGGGACTAGCAGGCTTTCCTAAGAGAGACGAA AGCGTACATGATGCTTTTGGGACAGGGCATAGTTCTACAAGTATATCTGCTGGTCTTGGTAAGATAATCTTAAACATCAA ACATTTTATGAAACACGTGCACACATCCAAGAATCTCAAAAGGCTGGACAACAAACCTCAATGTTCTCAGTTTTTGTACA AAAAATTGTAGGCATGGCAGTTGCAAGGGATATACTAGGAAAGAACAACAGTGTCATCTCAGTGATCGGAGATGGGGCAA TGACCGCTGGCCAAGCTTATGAAGCCCTGAACAATGCAGGATTCCTTGACTGTAACATGATAGTTATACTTAACGACAAC AAGCAAGTCTCTTTACCAACTGCTACAGTTGATGGCCCTGCAACTCCAGTTGGAGCCCTCAGTAGTACTTTAGCCAAAAT TCAAGCAAGTACAGAATTTCGCAAACTCAGAGAAGCTGCAAAAGTATACTTCTCAAACTTTTCTTATAAAAAAGAACTTA GGGTTTCATTTCTTGTGTCAAATTTCATTAGACCGTGGCATCTGACTCCAATTTTATTTGATAAAGACCATTACAAAGCA AATAGGAGGACAGACGCACCAGGTTGCGGCAAAGGTAGATGAGTATGCAAGAGGTATGATCAGTGCATCCGGCTCTACAC TTTTTGAGGAGCTCGGCTTATACTACATCGGCCCTGTGGATGGTCACGACATTGAAGGTCTGGTCACCATTCTTGAAAAG GTGAAGGCAATGCCTGTCCCTGGTCCAATTTTGATTCATATTGTAACAGAGAAAGGGAAGGGATACCCACCAGCAGAAGC AGCTGCTGATAAAATGCACGGTGAGAATCGAACTTTATTTATTTTGTCTTAACAGGATTATTAGCAGAAACTCTGAAAGG AGGCTCATATTGTCACACTTTCAGGTGTTGTTAAGTTTGAACCAGCAACAGGCCGTCAGTTTAAGCCAAAATCCTCTACT TTGTCATATACCCAGTACTTTGCTGAGTCATTGATCAAGGAAGCTGAAATAGACAACAAGATAGTAGGGATTCACGCCGC AATGGGTGGGGGAACAGGTCTAAATTATTTCCAGAAAAGGTTTCCAGACCGCTGTTTTGATGTGGGGATAGCTGAACAAC ACGCCATTACATTTGCAGCTGGATTAGCCGCAGAAGGTCTCAAGCCATTTTGTGCCATCTATTCATCATTCCTGCAACGT GGATATGATCAGGTTAGCCAACAACAATAGACAAATATAGCAGATACTAATTTTATTCTAGTGTTTCTGTTAAACTGTCA CAAATCATCTCACATTTTGTAATTTGAATTGTGTATGAAGGTGGTCCATGATGTAGATCTTCAGAAACTACCAGTTCGAT TTGCTATTGACCGAGCTGGTTTGGTTGGAGCTGATGGACCAACCCACTGTGGAGCATTTGATATCACATTCATGGCCAGC TTGCCCAACATGGTGGTCATGGCTCCATCTGATGAAGCTGAACTGATGCACATGGTTGCGACAGCAGCAGCCATAGATGA CAGACCAAGCTGCTTTAGATTTCCAAGGGGCAACGGGATTGGAGCCACCTTGCCGCTCAATAACAAAGGAACTCCACTTG AGGTTAGCATGAGTAACGAACAGGCATTTTCCATACTTAATGCTAATAGATAAGTAATTAAATGGGGATTTTTTTGCTTA TATAGATAGGAAAGGGCAAAATTCTGACAGAAGGCAGCAGAGTTGCCATTTTAGGATATGGTTCTGCAGTTCAACAATGC TTGCACGCAGCACAAATTCTCGAAGAACATGACATTTCTGTGACAGTCGCTGATGCAAGGTTTTGCAAACCCTTGGATAT TGATCTCATTAAGCTATTGGCTAAGGAGCACGAGTTTGTCATCACAGTGGAAGAAGGTTCTATCGGAGGTTTTGGATCAC ATGTTTCACAGTTCCTAAGCATAGCTGGCCTCCTGGATGGACCGCTGAAGGTAAACCTTCCTTTTATGTCGACAGGTCAC TCTTTCCATGATTTTTGTTTTCAGCTTCTTAGTTCTACTACATGGCTCCATTTCTCTAGTTGGTAATCCTCATTTGACAT TTTCCTGCAGTGGAGAGCAATGACACTTCCTGACAGATACATAGAGCATGGATCACCACAAGATCAGATGGATGAAGCGG GACTTACATCAAAGCATATTGTAGCAACAGTCTTGTCTCTTCTGGAAAGGCCAAAAGAAGCTCTCTTATTCAAGTAAAAT CATAAATGGATCAGAATCTTCACCTGGAACCTGGAAGATAAATCATATTCTTAGAAGGCTCCATGCAAGTCACAAAAAGA TTTTAACCAAGCCTTACAACAGAAAACATGCAAGTCACACAATTGAAGACTCAAATTTGCTGGCCAAATTTCAATAATTG AATCCGGTCACAGACCCTGTCTATATGTCAACTTGTAGTTATGATATAGTTATTTTATAATAAATTCTGTTTCAGTTCGT GTTGTATATCCACAATGATTATGTCATCTTAACAATGGTTCCAATTAGTGGCAGAAGCTCAAATGGTTACCAGTCGATTC TATTGCTAGCAACAATAAATA
CDS sequence (LotjaGi2g1v0328900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATGTGGGGCACCAGATGCAATAAAATTGCAGGCATATGCACACAAGATTCTCACAGGTAGAAGGTCTAGGATGCC CACTATTAGGAAAACCTTGGGACTAGCAGGCTTTCCTAAGAGAGACGAAAGCGTACATGATGCTTTTGGGACAGGGCATA GTTCTACAAGTATATCTGCTGGTCTTGGCATGGCAGTTGCAAGGGATATACTAGGAAAGAACAACAGTGTCATCTCAGTG ATCGGAGATGGGGCAATGACCGCTGGCCAAGCTTATGAAGCCCTGAACAATGCAGGATTCCTTGACTGTAACATGATAGT TATACTTAACGACAACAAGCAAGTCTCTTTACCAACTGCTACAGTTGATGGCCCTGCAACTCCAGTTGGAGCCCTCAGTA GTACTTTAGCCAAAATTCAAGCAAGTACAGAATTTCGCAAACTCAGAGAAGCTGCAAAAACCATTACAAAGCAAATAGGA GGACAGACGCACCAGGTTGCGGCAAAGGTAGATGAGTATGCAAGAGGTATGATCAGTGCATCCGGCTCTACACTTTTTGA GGAGCTCGGCTTATACTACATCGGCCCTGTGGATGGTCACGACATTGAAGGTCTGGTCACCATTCTTGAAAAGGTGAAGG CAATGCCTGTCCCTGGTCCAATTTTGATTCATATTGTAACAGAGAAAGGGAAGGGATACCCACCAGCAGAAGCAGCTGCT GATAAAATGCACGGTGTTGTTAAGTTTGAACCAGCAACAGGCCGTCAGTTTAAGCCAAAATCCTCTACTTTGTCATATAC CCAGTACTTTGCTGAGTCATTGATCAAGGAAGCTGAAATAGACAACAAGATAGTAGGGATTCACGCCGCAATGGGTGGGG GAACAGGTCTAAATTATTTCCAGAAAAGGTTTCCAGACCGCTGTTTTGATGTGGGGATAGCTGAACAACACGCCATTACA TTTGCAGCTGGATTAGCCGCAGAAGGTCTCAAGCCATTTTGTGCCATCTATTCATCATTCCTGCAACGTGGATATGATCA GGTGGTCCATGATGTAGATCTTCAGAAACTACCAGTTCGATTTGCTATTGACCGAGCTGGTTTGGTTGGAGCTGATGGAC CAACCCACTGTGGAGCATTTGATATCACATTCATGGCCAGCTTGCCCAACATGGTGGTCATGGCTCCATCTGATGAAGCT GAACTGATGCACATGGTTGCGACAGCAGCAGCCATAGATGACAGACCAAGCTGCTTTAGATTTCCAAGGGGCAACGGGAT TGGAGCCACCTTGCCGCTCAATAACAAAGGAACTCCACTTGAGATAGGAAAGGGCAAAATTCTGACAGAAGGCAGCAGAG TTGCCATTTTAGGATATGGTTCTGCAGTTCAACAATGCTTGCACGCAGCACAAATTCTCGAAGAACATGACATTTCTGTG ACAGTCGCTGATGCAAGGTTTTGCAAACCCTTGGATATTGATCTCATTAAGCTATTGGCTAAGGAGCACGAGTTTGTCAT CACAGTGGAAGAAGGTTCTATCGGAGGTTTTGGATCACATGTTTCACAGTTCCTAAGCATAGCTGGCCTCCTGGATGGAC CGCTGAAGTGGAGAGCAATGACACTTCCTGACAGATACATAGAGCATGGATCACCACAAGATCAGATGGATGAAGCGGGA CTTACATCAAAGCATATTGTAGCAACAGTCTTGTCTCTTCTGGAAAGGCCAAAAGAAGCTCTCTTATTCAAGTAA
Protein sequence (LotjaGi2g1v0328900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCGAPDAIKLQAYAHKILTGRRSRMPTIRKTLGLAGFPKRDESVHDAFGTGHSSTSISAGLGMAVARDILGKNNSVISV IGDGAMTAGQAYEALNNAGFLDCNMIVILNDNKQVSLPTATVDGPATPVGALSSTLAKIQASTEFRKLREAAKTITKQIG GQTHQVAAKVDEYARGMISASGSTLFEELGLYYIGPVDGHDIEGLVTILEKVKAMPVPGPILIHIVTEKGKGYPPAEAAA DKMHGVVKFEPATGRQFKPKSSTLSYTQYFAESLIKEAEIDNKIVGIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAIT FAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDITFMASLPNMVVMAPSDEA ELMHMVATAAAIDDRPSCFRFPRGNGIGATLPLNNKGTPLEIGKGKILTEGSRVAILGYGSAVQQCLHAAQILEEHDISV TVADARFCKPLDIDLIKLLAKEHEFVITVEEGSIGGFGSHVSQFLSIAGLLDGPLKWRAMTLPDRYIEHGSPQDQMDEAG LTSKHIVATVLSLLERPKEALLFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 584 | 574 | 0.0 | ||
| PANTHER | 11 | 584 | 574 | 0.0 | – | |
| TIGRFAM | 11 | 574 | 564 | 1.7E-200 | ||
| SUPERFAMILY | 12 | 326 | 315 | 7.31E-55 | ||
| CDD | 12 | 233 | 222 | 3.25209E-86 | ||
| Pfam | 12 | 227 | 216 | 1.4E-74 | ||
| SUPERFAMILY | 241 | 425 | 185 | 1.66E-60 | ||
| Gene3D | 261 | 433 | 173 | 1.1E-65 | – | |
| SMART | 264 | 429 | 166 | 8.1E-68 | ||
| Pfam | 264 | 425 | 162 | 6.3E-41 | ||
| CDD | 270 | 423 | 154 | 1.16741E-71 | – | |
| ProSitePatterns | 370 | 386 | 17 | - | ||
| SUPERFAMILY | 438 | 574 | 137 | 1.83E-36 | ||
| Gene3D | 443 | 575 | 133 | 3.6E-36 | ||
| Pfam | 443 | 566 | 124 | 6.4E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 1-deoxy-D-xylulose-5-phosphate synthase activity | Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2). | ||
| Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. |
Expression pattern of LotjaGi2g1v0328900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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