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Field | Value |
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Namespace | Biological process |
Short description | Isoprenoid biosynthetic process |
Full defintion | The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. |
Subterm of |
The relationship of GO:0008299 with other GO terms.
Relationship type | GO terms |
---|---|
Is a | |
Regulates | n.a. |
Part of | n.a. |
Positively regulates | n.a. |
Negatively regulates | n.a. |
A force layout showing the ancestor tree for GO:0008299, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.
This table contains additional metadata associated with the GO entry's definition field.
Field | Value |
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ISBN |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Transcript | Name | Description | GO terms | GO count |
---|---|---|---|---|
– | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like [Cicer arietinum] gi|502153809|ref|XP_004509470.1| | 3 | ||
– | PREDICTED: prenyl transferase-like isoform 1 [Glycine max] gi|356549586|ref|XP_003543173.1| | 1 | ||
– | PREDICTED: prenyl transferase-like isoform 1 [Glycine max] gi|356549586|ref|XP_003543173.1| | 1 | ||
– | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like [Cicer arietinum] gi|502153809|ref|XP_004509470.1| | 3 | ||
– | PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502152794|ref|XP_004509097.1| | 1 | ||
– | PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase-like [Glycine max] gi|356550161|ref|XP_003543457.1| | 4 | ||
– | Isopentenyl pyrophosphate isomerase [Pueraria montana var]. lobata] gi|35186998|gb|AAQ84167.1| | 2 | ||
– | PREDICTED: mevalonate kinase-like [Glycine max] gi|356505870|ref|XP_003521712.1| | 4 | ||
– | PREDICTED: mevalonate kinase-like [Glycine max] gi|356505870|ref|XP_003521712.1| | 4 | ||
– | Hydroxymethylglutaryl-CoA synthase [Medicago truncatula] gi|357500885|ref|XP_003620731.1| | 2 | ||
– | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Cicer arietinum] gi|502161813|ref|XP_004512291.1| | 3 | ||
– | PREDICTED: geranylgeranyl pyrophosphate synthase, chloroplastic-like [Glycine max] gi|356559416|ref|XP_003547995.1| | 1 | ||
– | PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502160752|ref|XP_004511880.1| | 1 | ||
– | PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502160752|ref|XP_004511880.1| | 1 | ||
– | PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Glycine max] gi|356539911|ref|XP_003538436.1| | 2 | ||
– | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Glycine max] gi|356501322|ref|XP_003519474.1| | 3 | ||
– | PREDICTED: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like [Cicer arietinum] gi|502155936|ref|XP_004510245.1| | 4 | ||
– | PREDICTED: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic-like [Glycine max] gi|356563865|ref|XP_003550178.1| | 2 | ||
– | PREDICTED: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic-like [Glycine max] gi|356563865|ref|XP_003550178.1| | 3 | ||
– | PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Glycine max] gi|356563228|ref|XP_003549866.1| | 2 | ||
– | PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Glycine max] gi|356563228|ref|XP_003549866.1| | 2 | ||
– | 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like [Glycine max] gi|358248074|ref|NP_001240062.1| | 4 | ||
– | PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like isoform X2 [Cicer arietinum] gi|502141679|ref|XP_004504589.1| | 1 | ||
– | PREDICTED: geranylgeranyl pyrophosphate synthase, chloroplastic-like [Glycine max] gi|356559416|ref|XP_003547995.1| | 1 | ||
– | PREDICTED: diphosphomevalonate decarboxylase-like [Cicer arietinum] gi|502121015|ref|XP_004497159.1| | 2 | ||
– | Farnesyl-diphosphate synthase [Glycyrrhiza uralensis] gi|291585672|gb|ADE18770.1| | 1 | ||
– | Farnesyl-diphosphate synthase [Glycyrrhiza uralensis] gi|291585672|gb|ADE18770.1| | 1 | ||
– | 3-hydroxy-3-methylglutaryl coenzyme A reductase; TAIR: AT1G76490.1 hydroxy methylglutaryl CoA reductase 1; Swiss-Prot: sp|P29057|HMDH1_HEVBR 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; TrEMBL-Plants: tr|I1JIP4|I1JIP4_SOYBN 3-hydroxy-3-methylglutaryl coenzyme A reductase; Found in the gene: LotjaGi1g1v0058300 | 3 | ||
– | Isopentenyl-diphosphate delta-isomerase; TAIR: AT3G02780.1 isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2; Swiss-Prot: sp|O48965|IDI2_CAMAC Isopentenyl-diphosphate Delta-isomerase II; TrEMBL-Plants: tr|A0A0S3RSE2|A0A0S3RSE2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0485600 | 2 | ||
– | Hydroxymethylglutaryl-CoA synthase; TAIR: AT4G11820.2 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase; Swiss-Prot: sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase; TrEMBL-Plants: tr|G7KQF5|G7KQF5_MEDTR 3-hydroxy-3-methylglutaryl coenzyme A synthase; Found in the gene: LotjaGi2g1v0151200 | 2 | ||
– | 3-hydroxy-3-methylglutaryl coenzyme A reductase; TAIR: AT1G76490.1 hydroxy methylglutaryl CoA reductase 1; Swiss-Prot: sp|P29057|HMDH1_HEVBR 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; TrEMBL-Plants: tr|A9YVC3|A9YVC3_MEDTR 3-hydroxy-3-methylglutaryl coenzyme A reductase; Found in the gene: LotjaGi2g1v0352700 | 3 | ||
– | 3-hydroxy-3-methylglutaryl coenzyme A reductase; TAIR: AT1G76490.1 hydroxy methylglutaryl CoA reductase 1; Swiss-Prot: sp|P29057|HMDH1_HEVBR 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; TrEMBL-Plants: tr|A0A075EC73|A0A075EC73_ASTME 3-hydroxy-3-methylglutaryl coenzyme A reductase; Found in the gene: LotjaGi2g1v0352700 | 3 | ||
– | Geranylgeranyl pyrophosphate synthase; TAIR: AT4G36810.1 geranylgeranyl pyrophosphate synthase 1; Swiss-Prot: sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic; TrEMBL-Plants: tr|I1LHM6|I1LHM6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0394000 | 1 | ||
– | Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QNX9|A0A0B2QNX9_GLYSO Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; Found in the gene: LotjaGi2g1v0405700 | 1 | ||
– | Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QNX9|A0A0B2QNX9_GLYSO Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; Found in the gene: LotjaGi2g1v0405700 | 1 | ||
– | Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QNX9|A0A0B2QNX9_GLYSO Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; Found in the gene: LotjaGi2g1v0405700 | 1 | ||
– | Geranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7KPC0|K7KPC0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0405700 | 1 | ||
– | Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.1 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0R0JT66|A0A0R0JT66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0405700 | 1 | ||
– | Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.1 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0R0JT66|A0A0R0JT66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0405700 | 1 | ||
– | Hydroxymethylglutaryl-CoA synthase; TAIR: AT4G11820.2 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase; Swiss-Prot: sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase; TrEMBL-Plants: tr|I1LGI7|I1LGI7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0430500 | 2 | ||
– | Hydroxymethylglutaryl-CoA synthase; TAIR: AT4G11820.2 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase; Swiss-Prot: sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase; TrEMBL-Plants: tr|I1LGI7|I1LGI7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0430500 | 2 | ||
– | Hydroxymethylglutaryl-CoA synthase; TAIR: AT4G11820.2 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase; Swiss-Prot: sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase; TrEMBL-Plants: tr|I1LGI7|I1LGI7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0430500 | 2 | ||
– | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TAIR: AT5G62790.1 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Swiss-Prot: sp|Q8W250|DXR_ORYSJ 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic; TrEMBL-Plants: tr|I3SQW6|I3SQW6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0087700 | 4 | ||
– | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); TAIR: AT5G60600.1 4-hydroxy-3-methylbut-2-enyl diphosphate synthase; Swiss-Prot: sp|F4K0E8|ISPG_ARATH 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic; TrEMBL-Plants: tr|A0A151RCK5|A0A151RCK5_CAJCA 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Found in the gene: LotjaGi3g1v0162300 | 4 | ||
– | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); TAIR: AT5G60600.1 4-hydroxy-3-methylbut-2-enyl diphosphate synthase; Swiss-Prot: sp|F4K0E8|ISPG_ARATH 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic; TrEMBL-Plants: tr|A0A151RCK5|A0A151RCK5_CAJCA 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Found in the gene: LotjaGi3g1v0162300 | 4 | ||
– | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); TAIR: AT5G60600.1 4-hydroxy-3-methylbut-2-enyl diphosphate synthase; Swiss-Prot: sp|F4K0E8|ISPG_ARATH 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic; TrEMBL-Plants: tr|I1M4L1|I1M4L1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0162300 | 4 | ||
– | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); TAIR: AT5G60600.1 4-hydroxy-3-methylbut-2-enyl diphosphate synthase; Swiss-Prot: sp|F4K0E8|ISPG_ARATH 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic; TrEMBL-Plants: tr|A0A151RCK5|A0A151RCK5_CAJCA 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Found in the gene: LotjaGi3g1v0162300 | 4 | ||
– | Solanesyl diphosphate synthase; TAIR: AT1G78510.1 solanesyl diphosphate synthase 1; Swiss-Prot: sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1; TrEMBL-Plants: tr|A0A0R4J4Y7|A0A0R4J4Y7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0255700 | 1 | ||
– | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TAIR: AT2G02500.1 Nucleotide-diphospho-sugar transferases superfamily protein; Swiss-Prot: sp|P69834|ISPD_ARATH 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic; TrEMBL-Plants: tr|I3S1B8|I3S1B8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0002500 | 3 | ||
– | Geranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7KPC0|K7KPC0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0099100 | 1 | ||
– | Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1MVR8|I1MVR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0099100 | 1 | ||
– | Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1MVR8|I1MVR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0099100 | 1 | ||
– | Geranylgeranyl pyrophosphate synthase; TAIR: AT4G36810.1 geranylgeranyl pyrophosphate synthase 1; Swiss-Prot: sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic; TrEMBL-Plants: tr|D6Q1T4|D6Q1T4_MEDSA Geranylgeranyl-diphosphate synthase; Found in the gene: LotjaGi4g1v0115200 | 1 | ||
– | 3-hydroxy-3-methylglutaryl coenzyme A reductase; TAIR: AT1G76490.1 hydroxy methylglutaryl CoA reductase 1; Swiss-Prot: sp|O64967|HMDH2_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2; TrEMBL-Plants: tr|E0X6S2|E0X6S2_GLYUR 3-hydroxy-3-methylglutaryl coenzyme A reductase; Found in the gene: LotjaGi4g1v0140100_LC | 3 | ||
– | 3-hydroxy-3-methylglutaryl coenzyme A reductase; TAIR: AT1G76490.1 hydroxy methylglutaryl CoA reductase 1; Swiss-Prot: sp|O64967|HMDH2_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2; TrEMBL-Plants: tr|E0X6S2|E0X6S2_GLYUR 3-hydroxy-3-methylglutaryl coenzyme A reductase; Found in the gene: LotjaGi4g1v0140100_LC | 3 | ||
– | 3-hydroxy-3-methylglutaryl coenzyme A reductase; TAIR: AT1G76490.1 hydroxy methylglutaryl CoA reductase 1; Swiss-Prot: sp|O64967|HMDH2_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2; TrEMBL-Plants: tr|E0X6S2|E0X6S2_GLYUR 3-hydroxy-3-methylglutaryl coenzyme A reductase; Found in the gene: LotjaGi4g1v0140100_LC | 3 | ||
– | 3-hydroxy-3-methylglutaryl coenzyme A reductase; TAIR: AT1G76490.1 hydroxy methylglutaryl CoA reductase 1; Swiss-Prot: sp|O64967|HMDH2_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2; TrEMBL-Plants: tr|E0X6S2|E0X6S2_GLYUR 3-hydroxy-3-methylglutaryl coenzyme A reductase; Found in the gene: LotjaGi4g1v0140100_LC | 3 | ||
– | 3-hydroxy-3-methylglutaryl coenzyme A reductase; TAIR: AT1G76490.1 hydroxy methylglutaryl CoA reductase 1; Swiss-Prot: sp|O64967|HMDH2_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2; TrEMBL-Plants: tr|E0X6S2|E0X6S2_GLYUR 3-hydroxy-3-methylglutaryl coenzyme A reductase; Found in the gene: LotjaGi4g1v0140100_LC | 3 | ||
– | Hydroxymethylglutaryl-CoA synthase; TAIR: AT4G11820.2 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase; Swiss-Prot: sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase; TrEMBL-Plants: tr|A0A075EBV0|A0A075EBV0_ASTME 3-hydroxy-3-methylglutaryl coenzyme A synthase; Found in the gene: LotjaGi4g1v0218500 | 2 | ||
– | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TAIR: AT5G62790.1 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Swiss-Prot: sp|Q8W250|DXR_ORYSJ 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic; TrEMBL-Plants: tr|A0A151S841|A0A151S841_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0234600 | 4 | ||
– | Geranylgeranyl pyrophosphate synthase; TAIR: AT4G38460.1 geranylgeranyl reductase; Swiss-Prot: sp|Q39108|GGR_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic; TrEMBL-Plants: tr|A0A1J7GK08|A0A1J7GK08_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0357300 | 1 | ||
– | Diphosphomevalonate decarboxylase; TAIR: AT3G54250.1 GHMP kinase family protein; Swiss-Prot: sp|F4JCU3|MVD2_ARATH Diphosphomevalonate decarboxylase MVD2, peroxisomal; TrEMBL-Plants: tr|A0A1J7IDM5|A0A1J7IDM5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0345200 | 2 | ||
– | Farnesyl diphosphate synthase; TAIR: AT5G47770.1 farnesyl diphosphate synthase 1; Swiss-Prot: sp|P49351|FPPS1_LUPAL Farnesyl pyrophosphate synthase 1; TrEMBL-Plants: tr|I3SE30|I3SE30_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0281600 | 2 |
A list of co-occurring GO terms within the L. japonicus gene space:
GO term | Namespace | Name | Observations | Saturation (%) |
---|---|---|---|---|
Molecular function | Transferase activity, transferring alkyl or aryl (other than methyl) groups | 1 | 1.59 |