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GO:0008299

Overview

Field Value
Namespace Biological process
Short description Isoprenoid biosynthetic process
Full defintion The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
Subterm of

Relationships

The relationship of GO:0008299 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
ISBN
Oxford Dictionary of Biochemistry and Molecular BiologyOxford Dictionary of Biochemistry and Molecular Biology

Anthony David Smith,Anthony Donald Smith · ISBN: 0198506732

Oxford University Press, USA, 2000 · 760 pages

This book provides a survey of current biochemistry and molecular biology in the form of a dictionary. It contains short but informative entries arranged under more than 17,000 headwords, providing fundamental but up-to-date information that is often difficult to locate in today'soverspecialized world. The book is intended as a handy reference of first resource for those seeking information outside their immediate knowledge area or for those who need to refresh their memory of fundamental knowledge. It gives the meanings of many terms used in molecular biology and describes the essential featuresof over approximately 2,000 enzymes and proteins, describing the reactions they catalyse or functions they perform, and includes filenames that facilitate the location of entires in databases of sequences. Many entries describe chemical compounds of relevance to biochemists, with approximately 950symbols and abbreviations. In addition, many physico-chemical laws, constants, and formulae are detailed. This revised edition has been fully up-dated in order to include the new information that has been discovered since the original edition was published in 1997.

Associated Lotus transcripts 63

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like [Cicer arietinum] gi|502153809|ref|XP_004509470.1| 3
PREDICTED: prenyl transferase-like isoform 1 [Glycine max] gi|356549586|ref|XP_003543173.1| 1
PREDICTED: prenyl transferase-like isoform 1 [Glycine max] gi|356549586|ref|XP_003543173.1| 1
PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like [Cicer arietinum] gi|502153809|ref|XP_004509470.1| 3
PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502152794|ref|XP_004509097.1| 1
PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase-like [Glycine max] gi|356550161|ref|XP_003543457.1| 4
Isopentenyl pyrophosphate isomerase [Pueraria montana var]. lobata] gi|35186998|gb|AAQ84167.1| 2
PREDICTED: mevalonate kinase-like [Glycine max] gi|356505870|ref|XP_003521712.1| 4
PREDICTED: mevalonate kinase-like [Glycine max] gi|356505870|ref|XP_003521712.1| 4
Hydroxymethylglutaryl-CoA synthase [Medicago truncatula] gi|357500885|ref|XP_003620731.1| 2
PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Cicer arietinum] gi|502161813|ref|XP_004512291.1| 3
PREDICTED: geranylgeranyl pyrophosphate synthase, chloroplastic-like [Glycine max] gi|356559416|ref|XP_003547995.1| 1
PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502160752|ref|XP_004511880.1| 1
PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502160752|ref|XP_004511880.1| 1
PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Glycine max] gi|356539911|ref|XP_003538436.1| 2
PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Glycine max] gi|356501322|ref|XP_003519474.1| 3
PREDICTED: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like [Cicer arietinum] gi|502155936|ref|XP_004510245.1| 4
PREDICTED: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic-like [Glycine max] gi|356563865|ref|XP_003550178.1| 2
PREDICTED: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic-like [Glycine max] gi|356563865|ref|XP_003550178.1| 3
PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Glycine max] gi|356563228|ref|XP_003549866.1| 2
PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Glycine max] gi|356563228|ref|XP_003549866.1| 2
1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like [Glycine max] gi|358248074|ref|NP_001240062.1| 4
PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like isoform X2 [Cicer arietinum] gi|502141679|ref|XP_004504589.1| 1
PREDICTED: geranylgeranyl pyrophosphate synthase, chloroplastic-like [Glycine max] gi|356559416|ref|XP_003547995.1| 1
PREDICTED: diphosphomevalonate decarboxylase-like [Cicer arietinum] gi|502121015|ref|XP_004497159.1| 2
Farnesyl-diphosphate synthase [Glycyrrhiza uralensis] gi|291585672|gb|ADE18770.1| 1
Farnesyl-diphosphate synthase [Glycyrrhiza uralensis] gi|291585672|gb|ADE18770.1| 1
3-hydroxy-3-methylglutaryl coenzyme A reductase; TAIR: AT1G76490.1 hydroxy methylglutaryl CoA reductase 1; Swiss-Prot: sp|P29057|HMDH1_HEVBR 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; TrEMBL-Plants: tr|I1JIP4|I1JIP4_SOYBN 3-hydroxy-3-methylglutaryl coenzyme A reductase; Found in the gene: LotjaGi1g1v0058300 3
Isopentenyl-diphosphate delta-isomerase; TAIR: AT3G02780.1 isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2; Swiss-Prot: sp|O48965|IDI2_CAMAC Isopentenyl-diphosphate Delta-isomerase II; TrEMBL-Plants: tr|A0A0S3RSE2|A0A0S3RSE2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0485600 2
Hydroxymethylglutaryl-CoA synthase; TAIR: AT4G11820.2 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase; Swiss-Prot: sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase; TrEMBL-Plants: tr|G7KQF5|G7KQF5_MEDTR 3-hydroxy-3-methylglutaryl coenzyme A synthase; Found in the gene: LotjaGi2g1v0151200 2
3-hydroxy-3-methylglutaryl coenzyme A reductase; TAIR: AT1G76490.1 hydroxy methylglutaryl CoA reductase 1; Swiss-Prot: sp|P29057|HMDH1_HEVBR 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; TrEMBL-Plants: tr|A9YVC3|A9YVC3_MEDTR 3-hydroxy-3-methylglutaryl coenzyme A reductase; Found in the gene: LotjaGi2g1v0352700 3
3-hydroxy-3-methylglutaryl coenzyme A reductase; TAIR: AT1G76490.1 hydroxy methylglutaryl CoA reductase 1; Swiss-Prot: sp|P29057|HMDH1_HEVBR 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; TrEMBL-Plants: tr|A0A075EC73|A0A075EC73_ASTME 3-hydroxy-3-methylglutaryl coenzyme A reductase; Found in the gene: LotjaGi2g1v0352700 3
Geranylgeranyl pyrophosphate synthase; TAIR: AT4G36810.1 geranylgeranyl pyrophosphate synthase 1; Swiss-Prot: sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic; TrEMBL-Plants: tr|I1LHM6|I1LHM6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0394000 1
Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QNX9|A0A0B2QNX9_GLYSO Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; Found in the gene: LotjaGi2g1v0405700 1
Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QNX9|A0A0B2QNX9_GLYSO Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; Found in the gene: LotjaGi2g1v0405700 1
Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QNX9|A0A0B2QNX9_GLYSO Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; Found in the gene: LotjaGi2g1v0405700 1
Geranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7KPC0|K7KPC0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0405700 1
Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.1 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0R0JT66|A0A0R0JT66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0405700 1
Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.1 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0R0JT66|A0A0R0JT66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0405700 1
Hydroxymethylglutaryl-CoA synthase; TAIR: AT4G11820.2 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase; Swiss-Prot: sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase; TrEMBL-Plants: tr|I1LGI7|I1LGI7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0430500 2
Hydroxymethylglutaryl-CoA synthase; TAIR: AT4G11820.2 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase; Swiss-Prot: sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase; TrEMBL-Plants: tr|I1LGI7|I1LGI7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0430500 2
Hydroxymethylglutaryl-CoA synthase; TAIR: AT4G11820.2 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase; Swiss-Prot: sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase; TrEMBL-Plants: tr|I1LGI7|I1LGI7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0430500 2
1-deoxy-D-xylulose 5-phosphate reductoisomerase; TAIR: AT5G62790.1 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Swiss-Prot: sp|Q8W250|DXR_ORYSJ 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic; TrEMBL-Plants: tr|I3SQW6|I3SQW6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0087700 4
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); TAIR: AT5G60600.1 4-hydroxy-3-methylbut-2-enyl diphosphate synthase; Swiss-Prot: sp|F4K0E8|ISPG_ARATH 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic; TrEMBL-Plants: tr|A0A151RCK5|A0A151RCK5_CAJCA 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Found in the gene: LotjaGi3g1v0162300 4
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); TAIR: AT5G60600.1 4-hydroxy-3-methylbut-2-enyl diphosphate synthase; Swiss-Prot: sp|F4K0E8|ISPG_ARATH 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic; TrEMBL-Plants: tr|A0A151RCK5|A0A151RCK5_CAJCA 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Found in the gene: LotjaGi3g1v0162300 4
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); TAIR: AT5G60600.1 4-hydroxy-3-methylbut-2-enyl diphosphate synthase; Swiss-Prot: sp|F4K0E8|ISPG_ARATH 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic; TrEMBL-Plants: tr|I1M4L1|I1M4L1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0162300 4
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); TAIR: AT5G60600.1 4-hydroxy-3-methylbut-2-enyl diphosphate synthase; Swiss-Prot: sp|F4K0E8|ISPG_ARATH 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic; TrEMBL-Plants: tr|A0A151RCK5|A0A151RCK5_CAJCA 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Found in the gene: LotjaGi3g1v0162300 4
Solanesyl diphosphate synthase; TAIR: AT1G78510.1 solanesyl diphosphate synthase 1; Swiss-Prot: sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1; TrEMBL-Plants: tr|A0A0R4J4Y7|A0A0R4J4Y7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0255700 1
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TAIR: AT2G02500.1 Nucleotide-diphospho-sugar transferases superfamily protein; Swiss-Prot: sp|P69834|ISPD_ARATH 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic; TrEMBL-Plants: tr|I3S1B8|I3S1B8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0002500 3
Geranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7KPC0|K7KPC0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0099100 1
Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1MVR8|I1MVR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0099100 1
Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1MVR8|I1MVR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0099100 1
Geranylgeranyl pyrophosphate synthase; TAIR: AT4G36810.1 geranylgeranyl pyrophosphate synthase 1; Swiss-Prot: sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic; TrEMBL-Plants: tr|D6Q1T4|D6Q1T4_MEDSA Geranylgeranyl-diphosphate synthase; Found in the gene: LotjaGi4g1v0115200 1
3-hydroxy-3-methylglutaryl coenzyme A reductase; TAIR: AT1G76490.1 hydroxy methylglutaryl CoA reductase 1; Swiss-Prot: sp|O64967|HMDH2_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2; TrEMBL-Plants: tr|E0X6S2|E0X6S2_GLYUR 3-hydroxy-3-methylglutaryl coenzyme A reductase; Found in the gene: LotjaGi4g1v0140100_LC 3
3-hydroxy-3-methylglutaryl coenzyme A reductase; TAIR: AT1G76490.1 hydroxy methylglutaryl CoA reductase 1; Swiss-Prot: sp|O64967|HMDH2_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2; TrEMBL-Plants: tr|E0X6S2|E0X6S2_GLYUR 3-hydroxy-3-methylglutaryl coenzyme A reductase; Found in the gene: LotjaGi4g1v0140100_LC 3
3-hydroxy-3-methylglutaryl coenzyme A reductase; TAIR: AT1G76490.1 hydroxy methylglutaryl CoA reductase 1; Swiss-Prot: sp|O64967|HMDH2_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2; TrEMBL-Plants: tr|E0X6S2|E0X6S2_GLYUR 3-hydroxy-3-methylglutaryl coenzyme A reductase; Found in the gene: LotjaGi4g1v0140100_LC 3
3-hydroxy-3-methylglutaryl coenzyme A reductase; TAIR: AT1G76490.1 hydroxy methylglutaryl CoA reductase 1; Swiss-Prot: sp|O64967|HMDH2_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2; TrEMBL-Plants: tr|E0X6S2|E0X6S2_GLYUR 3-hydroxy-3-methylglutaryl coenzyme A reductase; Found in the gene: LotjaGi4g1v0140100_LC 3
3-hydroxy-3-methylglutaryl coenzyme A reductase; TAIR: AT1G76490.1 hydroxy methylglutaryl CoA reductase 1; Swiss-Prot: sp|O64967|HMDH2_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2; TrEMBL-Plants: tr|E0X6S2|E0X6S2_GLYUR 3-hydroxy-3-methylglutaryl coenzyme A reductase; Found in the gene: LotjaGi4g1v0140100_LC 3
Hydroxymethylglutaryl-CoA synthase; TAIR: AT4G11820.2 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase; Swiss-Prot: sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase; TrEMBL-Plants: tr|A0A075EBV0|A0A075EBV0_ASTME 3-hydroxy-3-methylglutaryl coenzyme A synthase; Found in the gene: LotjaGi4g1v0218500 2
1-deoxy-D-xylulose 5-phosphate reductoisomerase; TAIR: AT5G62790.1 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Swiss-Prot: sp|Q8W250|DXR_ORYSJ 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic; TrEMBL-Plants: tr|A0A151S841|A0A151S841_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0234600 4
Geranylgeranyl pyrophosphate synthase; TAIR: AT4G38460.1 geranylgeranyl reductase; Swiss-Prot: sp|Q39108|GGR_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic; TrEMBL-Plants: tr|A0A1J7GK08|A0A1J7GK08_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0357300 1
Diphosphomevalonate decarboxylase; TAIR: AT3G54250.1 GHMP kinase family protein; Swiss-Prot: sp|F4JCU3|MVD2_ARATH Diphosphomevalonate decarboxylase MVD2, peroxisomal; TrEMBL-Plants: tr|A0A1J7IDM5|A0A1J7IDM5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0345200 2
Farnesyl diphosphate synthase; TAIR: AT5G47770.1 farnesyl diphosphate synthase 1; Swiss-Prot: sp|P49351|FPPS1_LUPAL Farnesyl pyrophosphate synthase 1; TrEMBL-Plants: tr|I3SE30|I3SE30_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0281600 2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
Molecular function Transferase activity, transferring alkyl or aryl (other than methyl) groups 1 1.59