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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR033248
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We have found 63 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 6.415s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0127349.1
n.a. PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [Glycine max] gi|356552857|ref|XP_003544779.1| chr0 57405824 57407227 +
2 domain predictions
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Lj0g3v0169239.1
n.a. PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Glycine max] gi|356523939|ref|XP_003530591.1| chr0 80868173 80872536 -
2 domain predictions
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Lj0g3v0292189.1
n.a. PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Cicer arietinum] gi|502132311|ref|XP_004501298.1| chr0 151658059 151664899 -
2 domain predictions
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Lj0g3v0357579.1
n.a. PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [Glycine max] gi|356552857|ref|XP_003544779.1| chr0 188283064 188287589 +
2 domain predictions
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Lj2g3v1239840.1
n.a. PREDICTED: transketolase, chloroplastic-like [Glycine max] gi|356506190|ref|XP_003521870.1| chr2 19607910 19609145 +
2 domain predictions
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Lj2g3v1455360.1
n.a. PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Glycine max] gi|356529695|ref|XP_003533424.1| chr2 23010999 23015473 -
2 domain predictions
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Lj3g3v1591670.1
n.a. PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial-like [Cicer arietinum] gi|502146727|ref|XP_004506580.1| chr3 20208012 20213897 +
2 domain predictions
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Lj3g3v2737470.1
n.a. PREDICTED: transketolase, chloroplastic-like [Glycine max] gi|356506190|ref|XP_003521870.1| chr3 33775613 33779457 -
2 domain predictions
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Lj4g3v2046230.1
n.a. PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Glycine max] gi|356564868|ref|XP_003550669.1| chr4 28472171 28474995 -
2 domain predictions
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Lj4g3v2374920.1
n.a. PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Cicer arietinum] gi|502151190|ref|XP_004508322.1| chr4 32782999 32789304 -
2 domain predictions
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Lj4g3v2468350.1
n.a. Pyruvate dehydrogenase E1 component subunit beta [Medicago truncatula] gi|357461751|ref|XP_003601157.1| chr4 33717982 33722579 -
2 domain predictions
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Lj4g3v2468350.2
n.a. PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [Cicer arietinum] gi|502141609|ref|XP_004504563.1| chr4 33717982 33723043 -
2 domain predictions
 –
Lj5g3v2292500.1
n.a. PREDICTED: transketolase, chloroplastic-like [Glycine max] gi|356576867|ref|XP_003556551.1| chr5 33546784 33550422 +
2 domain predictions
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Lj5g3v2292510.1
n.a. Transketolase [Medicago truncatula] gi|357445031|ref|XP_003592793.1| chr5 33546786 33550925 +
2 domain predictions
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Lj6g3v1916060.1
n.a. PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Glycine max] gi|356546474|ref|XP_003541651.1| chr6 21633629 21638522 +
2 domain predictions
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Lj6g3v1946290.1
n.a. PREDICTED: pyruvate dehydrogenase E1 component subunit beta-like [Glycine max] gi|356525080|ref|XP_003531155.1| chr6 22158133 22161863 -
2 domain predictions
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LotjaGi1g1v0387200.1
n.a. 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 3; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|V7ATQ4|V7ATQ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0387200 LjG1.1_chr1 87049564 87056687 -
2 domain predictions
 –
LotjaGi1g1v0387200.2
n.a. 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 3; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|K7KTK7|K7KTK7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0387200 LjG1.1_chr1 87049650 87056677 -
2 domain predictions
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LotjaGi1g1v0387200.3
n.a. 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 3; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|K7KTK7|K7KTK7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0387200 LjG1.1_chr1 87049884 87055504 -
2 domain predictions
 –
LotjaGi1g1v0387200.4
n.a. 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 3; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|K7KTK7|K7KTK7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0387200 LjG1.1_chr1 87050056 87055501 -
2 domain predictions
 –
LotjaGi1g1v0387200.5
n.a. 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 3; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|K7KTK7|K7KTK7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0387200 LjG1.1_chr1 87050056 87055751 -
2 domain predictions
 –
LotjaGi1g1v0801100.1
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT5G50850.1 Transketolase family protein; Swiss-Prot: sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; TrEMBL-Plants: tr|I1JJD2|I1JJD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0801100 LjG1.1_chr1 137157303 137164233 +
2 domain predictions
 –
LotjaGi1g1v0801100.2
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT5G50850.1 Transketolase family protein; Swiss-Prot: sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; TrEMBL-Plants: tr|I1JJD2|I1JJD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0801100 LjG1.1_chr1 137157932 137162520 +
2 domain predictions
 –
LotjaGi1g1v0801100.3
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT5G50850.1 Transketolase family protein; Swiss-Prot: sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; TrEMBL-Plants: tr|I1JJD2|I1JJD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0801100 LjG1.1_chr1 137157934 137162520 +
2 domain predictions
 –
LotjaGi1g1v0801100.4
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT5G50850.1 Transketolase family protein; Swiss-Prot: sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; TrEMBL-Plants: tr|I1JJD2|I1JJD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0801100 LjG1.1_chr1 137158000 137162520 +
2 domain predictions
 –
LotjaGi1g1v0801100.5
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT5G50850.1 Transketolase family protein; Swiss-Prot: sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; TrEMBL-Plants: tr|I1JJD2|I1JJD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0801100 LjG1.1_chr1 137158089 137162520 +
2 domain predictions
 –
LotjaGi1g1v0801200.1
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT5G50850.1 Transketolase family protein; Swiss-Prot: sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; TrEMBL-Plants: tr|I1JJD2|I1JJD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0801200 LjG1.1_chr1 137169056 137175542 +
2 domain predictions
 –
LotjaGi1g1v0801200.2
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT5G50850.1 Transketolase family protein; Swiss-Prot: sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; TrEMBL-Plants: tr|I1JJD2|I1JJD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0801200 LjG1.1_chr1 137169065 137174947 +
2 domain predictions
 –
LotjaGi2g1v0328900.1
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|K7LEZ7|K7LEZ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 LjG1.1_chr2 80419666 80424353 -
2 domain predictions
 –
LotjaGi2g1v0328900.2
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TMU0|A0A0L9TMU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 LjG1.1_chr2 80419819 80424239 -
2 domain predictions
 –
LotjaGi2g1v0328900.3
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TMU0|A0A0L9TMU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 LjG1.1_chr2 80420163 80423568 -
2 domain predictions
 –
LotjaGi2g1v0328900.4
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TMU0|A0A0L9TMU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 LjG1.1_chr2 80420163 80423589 -
2 domain predictions
 –
LotjaGi2g1v0328900.5
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|V7CGQ4|V7CGQ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 LjG1.1_chr2 80420163 80423974 -
2 domain predictions
 –
LotjaGi2g1v0328900.6
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|V7CGQ4|V7CGQ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 LjG1.1_chr2 80420163 80424006 -
2 domain predictions
 –
LotjaGi3g1v0228300.1
n.a. 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT1G55510.1 branched-chain alpha-keto acid decarboxylase E1 beta subunit; Swiss-Prot: sp|Q9SAV3|ODBB1_ARATH 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial; TrEMBL-Plants: tr|G7JTF7|G7JTF7_MEDTR Branched chain alpha-keto acid dehydrogenase E1 beta subunit; Found in the gene: LotjaGi3g1v0228300 LjG1.1_chr3 35537871 35544439 +
2 domain predictions
 –
LotjaGi3g1v0228300.3
n.a. 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT1G55510.1 branched-chain alpha-keto acid decarboxylase E1 beta subunit; Swiss-Prot: sp|Q9SAV3|ODBB1_ARATH 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial; TrEMBL-Plants: tr|A0A1J7I0V9|A0A1J7I0V9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0228300 LjG1.1_chr3 35538298 35543154 +
2 domain predictions
 –
LotjaGi3g1v0434600.1
n.a. 1-deoxy-D-xylulose-5-phosphate synthase, Transketolase; TAIR: AT2G45290.1 Transketolase; Swiss-Prot: sp|F4IW47|TKTC2_ARATH Transketolase-2, chloroplastic; TrEMBL-Plants: tr|A0A0L9UT98|A0A0L9UT98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0434600 LjG1.1_chr3 84620085 84624400 -
2 domain predictions
 –
LotjaGi4g1v0173200.1
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|I1KX60|I1KX60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173200 LjG1.1_chr4 34668880 34674283 +
2 domain predictions
 –
LotjaGi4g1v0173200.2
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TMU0|A0A0L9TMU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173200 LjG1.1_chr4 34669370 34673653 +
2 domain predictions
 –
LotjaGi4g1v0173200.3
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TMU0|A0A0L9TMU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173200 LjG1.1_chr4 34669420 34673653 +
2 domain predictions
 –
LotjaGi4g1v0173400.1
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A075EAT7|A0A075EAT7_ASTME 1-deoxy-D-xylulose 5-phosphate synthase; Found in the gene: LotjaGi4g1v0173400 LjG1.1_chr4 34750974 34755741 +
2 domain predictions
 –
LotjaGi4g1v0173400.2
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|I1KX60|I1KX60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173400 LjG1.1_chr4 34751145 34755482 +
2 domain predictions
 –
LotjaGi4g1v0173400.3
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|I1KX60|I1KX60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173400 LjG1.1_chr4 34751260 34755482 +
2 domain predictions
 –
LotjaGi4g1v0296700.1
n.a. 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A151SRI8|A0A151SRI8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0296700 LjG1.1_chr4 67065732 67068870 -
2 domain predictions
 –
LotjaGi4g1v0347600.1
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|Q6EJC9|Q6EJC9_PUEML 1-deoxy-D-xylulose 5-phosphate synthase; Found in the gene: LotjaGi4g1v0347600 LjG1.1_chr4 72655056 72662410 -
2 domain predictions
 –
LotjaGi4g1v0347600.2
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A1J7II68|A0A1J7II68_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0347600 LjG1.1_chr4 72656019 72659905 -
2 domain predictions
 –
LotjaGi4g1v0347600.3
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A1J7II68|A0A1J7II68_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0347600 LjG1.1_chr4 72656080 72662069 -
2 domain predictions
 –
LotjaGi4g1v0360000.1
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT2G34590.1 Transketolase family protein; Swiss-Prot: sp|O64688|ODPB3_ARATH Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic; TrEMBL-Plants: tr|I3SEX4|I3SEX4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0360000 LjG1.1_chr4 73899892 73906467 -
2 domain predictions
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LotjaGi4g1v0360000.2
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT1G30120.1 pyruvate dehydrogenase E1 beta; Swiss-Prot: sp|Q9C6Z3|ODPB2_ARATH Pyruvate dehydrogenase E1 component subunit beta-2, chloroplastic; TrEMBL-Plants: tr|I3SEX4|I3SEX4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0360000 LjG1.1_chr4 73901706 73902977 -
2 domain predictions
 –
LotjaGi4g1v0360000.3
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT1G30120.1 pyruvate dehydrogenase E1 beta; Swiss-Prot: sp|Q9C6Z3|ODPB2_ARATH Pyruvate dehydrogenase E1 component subunit beta-2, chloroplastic; TrEMBL-Plants: tr|I3SEX4|I3SEX4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0360000 LjG1.1_chr4 73901706 73902977 -
2 domain predictions
 –