Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005475
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 78 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.467s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0065549.1
n.a. PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like [Glycine max] gi|356568971|ref|XP_003552681.1| chr0 22812431 22815060 +
2 domain predictions
 –
Lj0g3v0169239.1
n.a. PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Glycine max] gi|356523939|ref|XP_003530591.1| chr0 80868173 80872536 -
3 domain predictions
 –
Lj0g3v0292189.1
n.a. PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Cicer arietinum] gi|502132311|ref|XP_004501298.1| chr0 151658059 151664899 -
3 domain predictions
 –
Lj0g3v0344219.1
n.a. Oxoglutarate dehydrogenase - like protein [Medicago truncatula] gi|357503061|ref|XP_003621819.1| chr0 180495272 180498012 +
3 domain predictions
 –
Lj1g3v1525990.1
n.a. PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [Cicer arietinum] gi|502100181|ref|XP_004491655.1| chr1 18140692 18142026 +
2 domain predictions
 –
Lj1g3v5062780.1
n.a. PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [Glycine max] gi|356552857|ref|XP_003544779.1| chr1 62274694 62280734 +
3 domain predictions
 –
Lj1g3v5062780.2
n.a. PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [Glycine max] gi|356552857|ref|XP_003544779.1| chr1 62274694 62280734 +
3 domain predictions
 –
Lj1g3v5062780.3
n.a. PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [Cicer arietinum] gi|502100181|ref|XP_004491655.1| chr1 62274694 62279427 +
2 domain predictions
 –
Lj2g3v1239840.1
n.a. PREDICTED: transketolase, chloroplastic-like [Glycine max] gi|356506190|ref|XP_003521870.1| chr2 19607910 19609145 +
3 domain predictions
 –
Lj2g3v1455360.1
n.a. PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Glycine max] gi|356529695|ref|XP_003533424.1| chr2 23010999 23015473 -
3 domain predictions
 –
Lj3g3v1591670.1
n.a. PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial-like [Cicer arietinum] gi|502146727|ref|XP_004506580.1| chr3 20208012 20213897 +
3 domain predictions
 –
Lj3g3v2737470.1
n.a. PREDICTED: transketolase, chloroplastic-like [Glycine max] gi|356506190|ref|XP_003521870.1| chr3 33775613 33779457 -
3 domain predictions
 –
Lj4g3v2046230.1
n.a. PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Glycine max] gi|356564868|ref|XP_003550669.1| chr4 28472171 28474995 -
3 domain predictions
 –
Lj4g3v2374920.1
n.a. PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Cicer arietinum] gi|502151190|ref|XP_004508322.1| chr4 32782999 32789304 -
3 domain predictions
 –
Lj4g3v2468350.1
n.a. Pyruvate dehydrogenase E1 component subunit beta [Medicago truncatula] gi|357461751|ref|XP_003601157.1| chr4 33717982 33722579 -
3 domain predictions
 –
Lj4g3v2468350.2
n.a. PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [Cicer arietinum] gi|502141609|ref|XP_004504563.1| chr4 33717982 33723043 -
3 domain predictions
 –
Lj5g3v2264090.1
n.a. PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like [Glycine max] gi|356575371|ref|XP_003555815.1| chr5 33085479 33090267 +
3 domain predictions
 –
Lj5g3v2292500.1
n.a. PREDICTED: transketolase, chloroplastic-like [Glycine max] gi|356576867|ref|XP_003556551.1| chr5 33546784 33550422 +
3 domain predictions
 –
Lj5g3v2292510.1
n.a. Transketolase [Medicago truncatula] gi|357445031|ref|XP_003592793.1| chr5 33546786 33550925 +
3 domain predictions
 –
Lj6g3v1916060.1
n.a. PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Glycine max] gi|356546474|ref|XP_003541651.1| chr6 21633629 21638522 +
3 domain predictions
 –
Lj6g3v1946290.1
n.a. PREDICTED: pyruvate dehydrogenase E1 component subunit beta-like [Glycine max] gi|356525080|ref|XP_003531155.1| chr6 22158133 22161863 -
3 domain predictions
 –
LotjaGi1g1v0387200.1
n.a. 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 3; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|V7ATQ4|V7ATQ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0387200 LjG1.1_chr1 87049564 87056687 -
3 domain predictions
 –
LotjaGi1g1v0387200.2
n.a. 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 3; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|K7KTK7|K7KTK7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0387200 LjG1.1_chr1 87049650 87056677 -
3 domain predictions
 –
LotjaGi1g1v0387200.3
n.a. 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 3; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|K7KTK7|K7KTK7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0387200 LjG1.1_chr1 87049884 87055504 -
3 domain predictions
 –
LotjaGi1g1v0387200.4
n.a. 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 3; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|K7KTK7|K7KTK7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0387200 LjG1.1_chr1 87050056 87055501 -
3 domain predictions
 –
LotjaGi1g1v0387200.5
n.a. 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 3; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|K7KTK7|K7KTK7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0387200 LjG1.1_chr1 87050056 87055751 -
3 domain predictions
 –
LotjaGi1g1v0535400.1
n.a. 2-oxoglutarate dehydrogenase E1 component family protein; TAIR: AT3G55410.1 2-oxoglutarate dehydrogenase, E1 component; Swiss-Prot: sp|Q54JE4|ODO1_DICDI 2-oxoglutarate dehydrogenase, mitochondrial; TrEMBL-Plants: tr|A0A0L9UWY3|A0A0L9UWY3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0535400 LjG1.1_chr1 106391663 106399717 -
3 domain predictions
 –
LotjaGi1g1v0535400.2
n.a. 2-oxoglutarate dehydrogenase E1 component family protein; TAIR: AT5G65750.1 2-oxoglutarate dehydrogenase, E1 component; Swiss-Prot: sp|Q54JE4|ODO1_DICDI 2-oxoglutarate dehydrogenase, mitochondrial; TrEMBL-Plants: tr|A0A0L9UWY3|A0A0L9UWY3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0535400 LjG1.1_chr1 106393614 106399288 -
3 domain predictions
 –
LotjaGi1g1v0535400.3
n.a. 2-oxoglutarate dehydrogenase E1 component family protein; TAIR: AT5G65750.1 2-oxoglutarate dehydrogenase, E1 component; Swiss-Prot: sp|Q54JE4|ODO1_DICDI 2-oxoglutarate dehydrogenase, mitochondrial; TrEMBL-Plants: tr|A0A0L9UWY3|A0A0L9UWY3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0535400 LjG1.1_chr1 106393614 106399288 -
3 domain predictions
 –
LotjaGi1g1v0535400.4
n.a. 2-oxoglutarate dehydrogenase E1 component family protein; TAIR: AT3G55410.1 2-oxoglutarate dehydrogenase, E1 component; Swiss-Prot: sp|Q54JE4|ODO1_DICDI 2-oxoglutarate dehydrogenase, mitochondrial; TrEMBL-Plants: tr|A0A0L9UWY3|A0A0L9UWY3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0535400 LjG1.1_chr1 106393614 106399288 -
3 domain predictions
 –
LotjaGi1g1v0801100.1
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT5G50850.1 Transketolase family protein; Swiss-Prot: sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; TrEMBL-Plants: tr|I1JJD2|I1JJD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0801100 LjG1.1_chr1 137157303 137164233 +
3 domain predictions
 –
LotjaGi1g1v0801100.2
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT5G50850.1 Transketolase family protein; Swiss-Prot: sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; TrEMBL-Plants: tr|I1JJD2|I1JJD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0801100 LjG1.1_chr1 137157932 137162520 +
3 domain predictions
 –
LotjaGi1g1v0801100.3
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT5G50850.1 Transketolase family protein; Swiss-Prot: sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; TrEMBL-Plants: tr|I1JJD2|I1JJD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0801100 LjG1.1_chr1 137157934 137162520 +
3 domain predictions
 –
LotjaGi1g1v0801100.4
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT5G50850.1 Transketolase family protein; Swiss-Prot: sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; TrEMBL-Plants: tr|I1JJD2|I1JJD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0801100 LjG1.1_chr1 137158000 137162520 +
3 domain predictions
 –
LotjaGi1g1v0801100.5
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT5G50850.1 Transketolase family protein; Swiss-Prot: sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; TrEMBL-Plants: tr|I1JJD2|I1JJD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0801100 LjG1.1_chr1 137158089 137162520 +
3 domain predictions
 –
LotjaGi1g1v0801200.1
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT5G50850.1 Transketolase family protein; Swiss-Prot: sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; TrEMBL-Plants: tr|I1JJD2|I1JJD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0801200 LjG1.1_chr1 137169056 137175542 +
3 domain predictions
 –
LotjaGi1g1v0801200.2
n.a. 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT5G50850.1 Transketolase family protein; Swiss-Prot: sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; TrEMBL-Plants: tr|I1JJD2|I1JJD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0801200 LjG1.1_chr1 137169065 137174947 +
3 domain predictions
 –
LotjaGi2g1v0328900.1
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|K7LEZ7|K7LEZ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 LjG1.1_chr2 80419666 80424353 -
3 domain predictions
 –
LotjaGi2g1v0328900.2
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TMU0|A0A0L9TMU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 LjG1.1_chr2 80419819 80424239 -
3 domain predictions
 –
LotjaGi2g1v0328900.3
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TMU0|A0A0L9TMU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 LjG1.1_chr2 80420163 80423568 -
3 domain predictions
 –
LotjaGi2g1v0328900.4
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TMU0|A0A0L9TMU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 LjG1.1_chr2 80420163 80423589 -
3 domain predictions
 –
LotjaGi2g1v0328900.5
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|V7CGQ4|V7CGQ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 LjG1.1_chr2 80420163 80423974 -
3 domain predictions
 –
LotjaGi2g1v0328900.6
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|V7CGQ4|V7CGQ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0328900 LjG1.1_chr2 80420163 80424006 -
3 domain predictions
 –
LotjaGi3g1v0228300.1
n.a. 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT1G55510.1 branched-chain alpha-keto acid decarboxylase E1 beta subunit; Swiss-Prot: sp|Q9SAV3|ODBB1_ARATH 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial; TrEMBL-Plants: tr|G7JTF7|G7JTF7_MEDTR Branched chain alpha-keto acid dehydrogenase E1 beta subunit; Found in the gene: LotjaGi3g1v0228300 LjG1.1_chr3 35537871 35544439 +
3 domain predictions
 –
LotjaGi3g1v0228300.2
n.a. Pyruvate dehydrogenase E1 component subunit beta; TAIR: AT1G55510.1 branched-chain alpha-keto acid decarboxylase E1 beta subunit; Swiss-Prot: sp|Q9SAV3|ODBB1_ARATH 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial; TrEMBL-Plants: tr|G7JTF7|G7JTF7_MEDTR Branched chain alpha-keto acid dehydrogenase E1 beta subunit; Found in the gene: LotjaGi3g1v0228300 LjG1.1_chr3 35538298 35540591 +
3 domain predictions
 –
LotjaGi3g1v0228300.3
n.a. 1-deoxy-D-xylulose-5-phosphate synthase; TAIR: AT1G55510.1 branched-chain alpha-keto acid decarboxylase E1 beta subunit; Swiss-Prot: sp|Q9SAV3|ODBB1_ARATH 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial; TrEMBL-Plants: tr|A0A1J7I0V9|A0A1J7I0V9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0228300 LjG1.1_chr3 35538298 35543154 +
3 domain predictions
 –
LotjaGi3g1v0434600.1
n.a. 1-deoxy-D-xylulose-5-phosphate synthase, Transketolase; TAIR: AT2G45290.1 Transketolase; Swiss-Prot: sp|F4IW47|TKTC2_ARATH Transketolase-2, chloroplastic; TrEMBL-Plants: tr|A0A0L9UT98|A0A0L9UT98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0434600 LjG1.1_chr3 84620085 84624400 -
3 domain predictions
 –
LotjaGi4g1v0173200.1
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|I1KX60|I1KX60_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173200 LjG1.1_chr4 34668880 34674283 +
3 domain predictions
 –
LotjaGi4g1v0173200.2
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TMU0|A0A0L9TMU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173200 LjG1.1_chr4 34669370 34673653 +
3 domain predictions
 –
LotjaGi4g1v0173200.3
n.a. 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|Q6YU51|DXS2_ORYSJ Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic; TrEMBL-Plants: tr|A0A0L9TMU0|A0A0L9TMU0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0173200 LjG1.1_chr4 34669420 34673653 +
3 domain predictions
 –