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LotjaGi2g1v0347200.4

Overview

Field Value
Gene ID LotjaGi2g1v0347200
Transcript ID LotjaGi2g1v0347200.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Rop guanine nucleotide exchange factor, putative; TAIR: AT1G31650.2 RHO guanyl-nucleotide exchange factor 14; Swiss-Prot: sp|Q56WM6|ROGFE_ARATH Rop guanine nucleotide exchange factor 14; TrEMBL-Plants: tr|K7K403|K7K403_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0347200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:82387092..82389748) extracted from Lotus japonicus Gifu genome v1.2.

ATGACATACAATGGCCTTGAGAGTTGCATTTTAAACAATCAGTCTTATGAAGAAGAGAGCAGAACTAGTAGAGGAGATGG GTGTATAACTGATTCATTTGATGAAGACGATTCCAGTTGTTCCTCTAGCAAAGATGCTTCTGGATCATTCTCTTCAAATT GTTTGAGAATGAAAAGAGATGAAAAGGGATTGGAAGAATGGAAAGTCTCTCAAAGTCCTCAACGTTTTTATGCCAAAGAG AAGAAGCCTGCTTATGTCATGCAACATTCAGATATAGAAGCCATGAAGGAGAAATTTTCAAAGCTCTTGCTAGGGGAAGA TGTTACAGGAGGAACTAAGGGCCTCAGCACAGCTTTGGCTCTGTCTAATGCCATCACAAACCTTGCGGGTATGCTTCTAG TCTCAGTGCATATGTTTGAAAATCTTTCTACAACTTATTCTAAAGTCAAAATCAATTATGGAGAGAAGCTTCTGCACAAG TAGCTTCTGGGTGTCATAATTGATTATGAGAAAAAAGTTGATTGATGCAATCATGCTATTAGTCCATGTTACCAGCTTGT CTTGGTTCCTTTAATGATTACATTCAACTGATAAAATATACAACCAACTACCATGTTATCTCTTGTACTAGGGAGAGCAC CCCTTGTACTCCTATAAATATAATTTGGCTTATCAAAAAAAATAAACTAACTGCCAAGTAGAATCTAATAATTTATGTTA CAATACCAAAAATTAAAAAATGTATTACTTTATGTACAATCATAGAATCTCACTTGTGAGAGTACATGGACTGTTTCTTA TTCATTTCTCTTTTTCTTCTGTTTTTATTTTTGAGCCAATGTAAGTCCTTAATGATCATATGCAGTAACGGTTTTTGGTG AGCTATGGAAATTGGAACCTTTATGTGAAGAAAGGAAGAACAAATGGCGAAGAGAAATGGAGTGGTTACTGTCTCCTACT AACTATATGGTTGAACTTGTTCCTGCTAAGCAAATCAGTGCCAATGGTGGGAGGATCTTTGAGGTATCTTTCATTTCAGC TTGATAAGAAAACAGAAAAGGACTATTTTATATATCACATAGCTGTAACATAAGAGAGTCTTCTTCAAACAGATTATGAC CCCGAAAGCTCGTGCAGACATCCACATGAATCTTCCGGCGCTTCAGAAGTTAGACTCTATGCTTATTGTATGTTAATTTC ATCTCTTTGTTCTCATCAAATTGAGATCTTGATTATTCTTTCAGATATCTTACAAGACTATCACATCTTTTTTGAATTGG CAGGAGGCTTTAGATTCTATGGTGGATACAGAGTTTTGGTATGCTGAGGGAGGAAGCCGTGCCGAAGGGAGGAACTCGAG TGCACGGCATAGCCAACGATGGTGGCTTCCATCACCCCAAGTACCAAAAAATGGCCTTTCTGATACTGAAAGATTGAGGT TGCTTCATCAGAGAAGGGTGGTGCGTCAGATATTCAAGGCTGCCAAATCTATCAATGAAAATGTGTTGCTTGAAATGCCT GTGCCAGCAATTATCAAAGATGCACTTGCAAAGGTGATGATAATCTTGTAATGTTGAACAACTTCCATCTGAATTGAATT GAAATAATATAGTATATCATATGATGGAGCAATTATGATGCAATTAGTGCATTTAATCACTGACACTTCTTAAAATGAGC TCAGGGTTTTGAACTAATAATATGCATCTCTTGATCATTATCACAGGGTAGACTTTTGAGGAACTTTTTCATTATTGGAT AAGAAATTTTCAAATGATCATTATAATATGGTAGGCTATAGATGAATTAAATCGCGATTTTCATTGGATCATTACTGAAT CTGTTTTCATGTTCCAGTCTGGGAAGACAAACCTTGGACAGGAGTTGCACAAGGTTTTGTTGGATGAATCAAGCAATGGA GAAGACATGCTTAAATCCCTCAATTTGAAATCTGAACATATTGTCCTTGAGACCATTAATAGATTGGAAGCTGCTATTTT CTCATTGAAAGAAAAGATTACAGAACAAGTTAGTCGCAAATCCCCAGCTCGAACCTCATGGTCTTTTGTGAAGGACTCTC TGTCAGAAGTAGATAAAATGGGGTTATTAATGGACCGTGCAGAAACACTCTTACAGCTGCTTAAAATCAGATTCCCAAAC CTTCCTCCAACATTTCTAGATGCTACTAAAGTTCAATATGGCAAGGTAAGGCCATTGTGAAAATTTTATGTGAATTTTTT GGCTAAACATTGTGGTAATGTTAGTTGATTAGTTGGTTTCTGTCTAAATCTGTGTAGGATATTGGACATTCCATTTTGGA AGCTTACTCCAGAGTTCTTGGAAACTTAGCTTTCAGCATATTGTCTAGAATAAGAGATATATTGCAGGAGGATTCTTTTA GCAATCCCAATTCGCCTGCGGCGGCGATAAATCTCTCTGAAACTTGGGTGGTGGGTTCTCATGTAAGACACTCCTTACTT GACAAAATGAACAAGGCAAATGGACAATGTTGTGATTCTAGTTTTGATAGTACTTCAGATTTAGAACTATCTATTGATGC CAAATCCAGTGTTGAAATAGCTACACCAAGCCGGAGTAGTGCCTGGTGTATTAGTAGAGAGGCTTGTACAAGTGTGTCTC CTCAAAATTCCCCATAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0347200.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACATACAATGGCCTTGAGAGTTGCATTTTAAACAATCAGTCTTATGAAGAAGAGAGCAGAACTAGTAGAGGAGATGG GTGTATAACTGATTCATTTGATGAAGACGATTCCAGTTGTTCCTCTAGCAAAGATGCTTCTGGATCATTCTCTTCAAATT GTTTGAGAATGAAAAGAGATGAAAAGGGATTGGAAGAATGGAAAGTCTCTCAAAGTCCTCAACGTTTTTATGCCAAAGAG AAGAAGCCTGCTTATGTCATGCAACATTCAGATATAGAAGCCATGAAGGAGAAATTTTCAAAGCTCTTGCTAGGGGAAGA TGTTACAGGAGGAACTAAGGGCCTCAGCACAGCTTTGGCTCTGTCTAATGCCATCACAAACCTTGCGGTAACGGTTTTTG GTGAGCTATGGAAATTGGAACCTTTATGTGAAGAAAGGAAGAACAAATGGCGAAGAGAAATGGAGTGGTTACTGTCTCCT ACTAACTATATGGTTGAACTTGTTCCTGCTAAGCAAATCAGTGCCAATGGTGGGAGGATCTTTGAGATTATGACCCCGAA AGCTCGTGCAGACATCCACATGAATCTTCCGGCGCTTCAGAAGTTAGACTCTATGCTTATTGAGGCTTTAGATTCTATGG TGGATACAGAGTTTTGGTATGCTGAGGGAGGAAGCCGTGCCGAAGGGAGGAACTCGAGTGCACGGCATAGCCAACGATGG TGGCTTCCATCACCCCAAGTACCAAAAAATGGCCTTTCTGATACTGAAAGATTGAGGTTGCTTCATCAGAGAAGGGTGGT GCGTCAGATATTCAAGGCTGCCAAATCTATCAATGAAAATGTGTTGCTTGAAATGCCTGTGCCAGCAATTATCAAAGATG CACTTGCAAAGTCTGGGAAGACAAACCTTGGACAGGAGTTGCACAAGGTTTTGTTGGATGAATCAAGCAATGGAGAAGAC ATGCTTAAATCCCTCAATTTGAAATCTGAACATATTGTCCTTGAGACCATTAATAGATTGGAAGCTGCTATTTTCTCATT GAAAGAAAAGATTACAGAACAAGTTAGTCGCAAATCCCCAGCTCGAACCTCATGGTCTTTTGTGAAGGACTCTCTGTCAG AAGTAGATAAAATGGGGTTATTAATGGACCGTGCAGAAACACTCTTACAGCTGCTTAAAATCAGATTCCCAAACCTTCCT CCAACATTTCTAGATGCTACTAAAGTTCAATATGGCAAGGATATTGGACATTCCATTTTGGAAGCTTACTCCAGAGTTCT TGGAAACTTAGCTTTCAGCATATTGTCTAGAATAAGAGATATATTGCAGGAGGATTCTTTTAGCAATCCCAATTCGCCTG CGGCGGCGATAAATCTCTCTGAAACTTGGGTGGTGGGTTCTCATGTAAGACACTCCTTACTTGACAAAATGAACAAGGCA AATGGACAATGTTGTGATTCTAGTTTTGATAGTACTTCAGATTTAGAACTATCTATTGATGCCAAATCCAGTGTTGAAAT AGCTACACCAAGCCGGAGTAGTGCCTGGTGTATTAGTAGAGAGGCTTGTACAAGTGTGTCTCCTCAAAATTCCCCATAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0347200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTYNGLESCILNNQSYEEESRTSRGDGCITDSFDEDDSSCSSSKDASGSFSSNCLRMKRDEKGLEEWKVSQSPQRFYAKE KKPAYVMQHSDIEAMKEKFSKLLLGEDVTGGTKGLSTALALSNAITNLAVTVFGELWKLEPLCEERKNKWRREMEWLLSP TNYMVELVPAKQISANGGRIFEIMTPKARADIHMNLPALQKLDSMLIEALDSMVDTEFWYAEGGSRAEGRNSSARHSQRW WLPSPQVPKNGLSDTERLRLLHQRRVVRQIFKAAKSINENVLLEMPVPAIIKDALAKSGKTNLGQELHKVLLDESSNGED MLKSLNLKSEHIVLETINRLEAAIFSLKEKITEQVSRKSPARTSWSFVKDSLSEVDKMGLLMDRAETLLQLLKIRFPNLP PTFLDATKVQYGKDIGHSILEAYSRVLGNLAFSILSRIRDILQEDSFSNPNSPAAAINLSETWVVGSHVRHSLLDKMNKA NGQCCDSSFDSTSDLELSIDAKSSVEIATPSRSSAWCISREACTSVSPQNSP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR33101:SF2
2 517 516 2.4E-267 –
PANTHER
PTHR33101
2 517 516 2.4E-267
IPR038937
MobiDBLite
mobidb-lite
14 51 38 - –
MobiDBLite
mobidb-lite
19 41 23 - –
ProSiteProfiles
PS51334
82 455 374 98.247
IPR005512
Gene3D
G3DSA:1.20.58.2010
84 324 241 6.3E-95 –
Pfam
PF03759
90 448 359 2.0E-159
IPR005512
Gene3D
G3DSA:1.20.58.2010
343 455 113 2.9E-15 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005089
Molecular function Rho guanyl-nucleotide exchange factor activity Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0347200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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