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LotjaGi2g1v0352000.1

Overview

Field Value
Gene ID LotjaGi2g1v0352000
Transcript ID LotjaGi2g1v0352000.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|I1LIE2|I1LIE2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0352000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:82806353..82811286) extracted from Lotus japonicus Gifu genome v1.2.

CTTTGCTTATCCTCCACCATCGCCCTAAAGAGGAAGCAGCTGCTACGCACTGAAATTGAAAACCCCGCAAACACAAACAC ATACACATTCTAGCACTGGAGTGAACACAGTGAACGTTGTTTCTCACCAATATTCAAATCTTGCTTCTCCCATTCCCTCT TTCATTCAACTCCATCACCAACCTTTCCAAGATCCGGGTTTCTCTTTTTCAATTCTCCAATCTTTTGTTTCCCTCTGAAT ATTCCAATATCCTGGAATGCCCGATTTCAATTTCAATCGGGCATTCTTTCTTTTCGTTATTCTGATCATGTATTTATTTA CCATATGCCATGAAGTCAGAGAGCTGAAAGCCTGAAACTGTATGTATCATTCATGCATATGAATCATGATGATGATGAAG AAGAATTGGTACTTTTTTGTTTGTTTGTTTAGGTTTTGTATTAAATCGTTTGAACCCTTTTGTTTTTTTCCTCTTTAATG TCTAATTTTTCAACCAAGTTCTTGTCTTGATAAGATTTTGATTATTGGGTTTTTTGTAAAATGGAGTTTGAACCTCTGGC TCTAAGCAATGAGGTTATTGAATTTGATATGATTGGTTTGGGGGATGATGCTGCTGCCATTGACATTGAGCATCCTGTTG AAGATGATGATGAGTTTGTTAATGGGGGAAACAATGATCCTGTTTTTGCTATTACCAATTCAGCTGCTACTGGGGGACCT CTCATACCTGGAGGGGGTGACTCAATTCTTGAACCTTGTCAAGGTATGGATTTTGAATCAGAAGAGGCTGCTAAGGCTTT TTATAATTCGTATGCTCGCCGTGTTGGCTTTAGCACGCGGGTGAGCATGTCTCGCCGCTCCAGGCGAGATGGTGCTATAA TTCAGAGGTCTTTTGTGTGTGCCAAGGAAGGTTTTCGTGTCGAGAAGGAGAGGCATCTTGAGGGCAGAGTCAAGCGGCCT CGTGTCGAGACTCGTGTTGGTTGCAAGGCCATGTTGGTTGTGAAAATACAAGATTCTGGCAGATGGGTTGTCTCTTCCTT TGTCAAGGAACACAACCATGAATTGGTTCCGCCTGATAAGGTGCACTGCCTTCGCTCTCATCGCCATGTTTCAGGTCCAG CTAAGTCATTGATTGATACCTTGCAGGGTGCCGGAATAGGGCCCAGTGGAATTATGTCTGCTCTTGTCAAAGAATATGGT GGAATTACCAATATCGGTTTCACCGAGCGTGACTGTAGGAATTATATGAGGAGCAGTAGGCAAAGGACCCTTGGAGGTGA CACTCAAATCCTCTTGGATTACTTTAAGAGCAAAGAAGCAGAGAATCCTTCATTTTTGTATGCTGTGCAGGGTGATGAAG ATAATTGCATGAGTAATATCTTATGGGTTGATCATAAGGCCAAGACTAACTACACTTACTTTGGTGACACTGTCACTTTT GACACAACATATAGGTCGAACCGCTATAGATTGCCTTTTGCACCTTTCACTGGAGTAAATCATCATGGACAGCCTGTCTT ATTTGGTTGTGCTCTCCTGATTAATGAGTCCGAGGCATCTTTTGTCTGGCTGTTCGAAACCTGGCTTGAAGCAATGTCAA GGCGACCTCCAGTTTCAATTACTACTGATCATGATAGGGTGATTCGTGGAGCCATCAACCATGTCTTTCCTGATACCCGT CACCGATTTTGCAAGTGGCACATTTTTAAAGAATGCCAAGAGAAGTTGTCTCATGTGCTTTCTGAACACCATGATTTTGA AGCTGACCTCCATAAATGTGTTAACCTAACAGAGTCCATTGAGGAGTTTGAGTCTTGTTGGTCCTCTCTAATTGATAGGT ATGGTCTCAGAGAACATGAATGGCTCCAAGAGATTTATGGTTATCGGCGGCAGTGGGTTCCAGTGTACTTGAGGGACTCA TTTTTCGCAGAAATGTCAATAACACAACGGAGTGATAGCATAAACTCTTATTTTGATGGCTATATCAATGCATCAACAAC ACTTCAGCTTTTTGTTAAACAGTATGAGAAGGCTTTGGAGAGCCGTTATGAGAAAGAAGTCAAAGCTGATTATGACACAA TAAACACTGCTCCACTACTGAAGACCCCATCTCCCATGGAGAAACAGGCAGCTGGAGTTTACACAAGGAGGTTGTTTATC AAATTTCAGGAAGAGTTGGTTGAGACATTAACTTTCTTGGCAAACAAAGTAGGTGAAGAAGAAATGATTACTGTGTATAG AGTAGCCAAATATGGGGAAAGTCACAAGGCATACTTTGTCAGATTTAACTTTTCTGAGATAAAAGCTACTTGTAGTTGCC AGATGTTTGAGTTTTCTGGTATAGTTTGTCGACATATATTGACTGTTTTTAGGGTGACAAATATTCTTACCTTACCATCT CATTATATCTTAAAAAGATGGAGCAGGAATGCCAAAAGTGGTGTCATACTGGATGACCATACTACTGATTTGTTAAATGG TGGACAAGAATCTCTAACTATCCGATACAATAATCTTCGCCGTGAGGCCCTTAAGTATGCTGATAAGGGAGTAAGCTCTC CAAAAGTTTATGATGTGGCTATGAGTGCTCTTCGGGAGGCAGCAAATAAAGTGGAAGCTGCGTCAAAAAATGGTGGAAGA CTGGTTATTTTGGATGGAGCTTGTAAAGAAGACCTTCATCAGGGAAACGAAGCAATAACAAGTTGTAGTAATGCTCAATT AAGTTCACAACTATCTTCGTCTACGGTATGTTGTTCTTGGTTATAGCAGTTTCTTTCTGCAGCATATTTTTTTGTCCCTT TTTTGTTTATAGAATTTTGAATGTGCTGCTTTCTGCTAGCAAAAATTGCTAAACCCTTTTGGCCCATTTGTTGTCCAATT GCATCAAACATAGGTCTTACCTGCAACAACGGAGTATATGATTTGATGATTTTAGCACAAATAATAGCATATATACTGTA TTAAACTGACATGGTAGGATGAATATAATCTAAAGTAAGTCGGAGCCTAGTTGATGTAGGATAAAGAGAGTTCTGACACT GAGAGAAAAAGAAAAGGAGATTAGGGGAGGAAAAGAAAGTTTGGAGAGTATAGATAGAGTAAAATCCCCATTCAAAAATC AAAATCACACCAGTCAAAATTACTCTGAATTGCGATTAAAAGTAACTTTTAATTTTGAGTCGATTAGAACAAGATCTCTT GAATCCAACTCAAACCAAATCCTAGTCAAGTTCAATTCCTTTACAAGTGTAAATCACATAATACATCGACATTAAGTTCC AAATACATAATGCCAAATTTCTATTCAACTTTCGTTAAAAAATCAGCTTATCAACTTTCTGATTTTTTTAGTCAAACATC TGTTGTTATGATTTAAGACAAGATGGCTTAGAAAACAGAATAAAATATGAATTTGCGGTATCTGGTTTTAATAAAAGGAA AAGTCAAACTAAAGGGGTTCAATGTGTTAAGATTACCGATTCACCATTTCTTTTGCTGGAAGAATCACCATAAATACTGT TTAAGGGGAGCCTTGATGGCTGATGCAATAGTTGATGTTGTCTCTGTGTAACTAGGAGGTAACAAGTTGAATCATTCTCT TACAAGTGAAAGGTAACATTACCTATAATAGACCGCAATGAGTTTGACCCTTTAGCCTTTGCAGCTCCGCGCTATTGTAG AAGCTTTATAGAACAAAGTTGCCCCTTCTTTATTGTGACCACTTCTGCCACCATCATTGTATTACAGAGACAAGTCTTTA TTGTTGATATTGTGGATATATTTCTAAAAAATATAACATAGTTGATTTTAATAATCTCAAAAATCCTTACAAAAAATGAG TAAGAGATGATTGGAAAGTTATGTGATATGCTCTCATTTTAAAACATTATTGATTAAGGAACTTAAAATAAGAAAATTAC TCCTTCAACCACCCCCCCCTCCACCACCCTATTATTCATTCAATCTCGATTTTTAAACACCGCAACAATAACGTCAGCCT ACATACAGCATATTTTTCTCTCCCTCTCTTTTCATATCACACCACATCATATCTACAAAACATTCCTATTTATGTTGTGT GATTTTGTTACAGGATGACCATGACAGAACAATTGAAAAGCTGACACATCAACTTGACCGAGCAAGGAAGAAGTGTGAAG TTTATAGGTCCAACTTGCTGTCAATTTTAAAAGCCATTGACGAGCAGAAGCTAGAATTATCAGTTAAAGTTCAAAATATC AAGTTAGAGATGAAAGAGTGATATAGGATTGCCATTGATGGAGTTGATGCATGCATGTATTTCTCTCCAGTGTAGGTTAA CCCTCTTGCAAAGCATTTTAAGTAGGGTGGGTGTCTGTATTGAGAAGGTGCCAAGAGTGAATGGCTGACTAGTTTTTTAC AAGTGAATTTGTTGTTTCCATATGCTGCACAAATAGTTTGAGTCATTGTATTTCTGGCAGTTTCGTAGTGTAAGGACTTG GGAGAGCATCTTGAAACCCCTTACAATCTTGAAACGCCTTACAATTGGATTTGGATTCCCTGCAATCAAGGAAATCTCGC ACTCACTTAGCAATATTTTTAGTTGTCTGATTTTAATCGGATGATTTTCACATTTTAAGTTGTATTATGTAACTTGGAAT GTGAGTCCTCCGATCAAGATTTGACGACTCAAAATGCTAGAATACGTGAATGATGGATTCTTCTAACAGCATAGAATCCA AATTCCTTACAACCACCAGCTTAGTAAATGACATGATAAGTTGAAGCAGCAGCTTTTAGTGTAATTAACTACGGTCTACA ATCGTCTTAATTTTATTTAATTGAAAAAAAATTCTCAAGCAAGTAGCTGGTTTGTGGGGAGTATTCAATAAAAGTATAGA CTACAGACTTATAGACTTTGATATTTATCCGTGTTTATTTGGATGAGCTGTTTT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0352000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGTTTGAACCTCTGGCTCTAAGCAATGAGGTTATTGAATTTGATATGATTGGTTTGGGGGATGATGCTGCTGCCAT TGACATTGAGCATCCTGTTGAAGATGATGATGAGTTTGTTAATGGGGGAAACAATGATCCTGTTTTTGCTATTACCAATT CAGCTGCTACTGGGGGACCTCTCATACCTGGAGGGGGTGACTCAATTCTTGAACCTTGTCAAGGTATGGATTTTGAATCA GAAGAGGCTGCTAAGGCTTTTTATAATTCGTATGCTCGCCGTGTTGGCTTTAGCACGCGGGTGAGCATGTCTCGCCGCTC CAGGCGAGATGGTGCTATAATTCAGAGGTCTTTTGTGTGTGCCAAGGAAGGTTTTCGTGTCGAGAAGGAGAGGCATCTTG AGGGCAGAGTCAAGCGGCCTCGTGTCGAGACTCGTGTTGGTTGCAAGGCCATGTTGGTTGTGAAAATACAAGATTCTGGC AGATGGGTTGTCTCTTCCTTTGTCAAGGAACACAACCATGAATTGGTTCCGCCTGATAAGGTGCACTGCCTTCGCTCTCA TCGCCATGTTTCAGGTCCAGCTAAGTCATTGATTGATACCTTGCAGGGTGCCGGAATAGGGCCCAGTGGAATTATGTCTG CTCTTGTCAAAGAATATGGTGGAATTACCAATATCGGTTTCACCGAGCGTGACTGTAGGAATTATATGAGGAGCAGTAGG CAAAGGACCCTTGGAGGTGACACTCAAATCCTCTTGGATTACTTTAAGAGCAAAGAAGCAGAGAATCCTTCATTTTTGTA TGCTGTGCAGGGTGATGAAGATAATTGCATGAGTAATATCTTATGGGTTGATCATAAGGCCAAGACTAACTACACTTACT TTGGTGACACTGTCACTTTTGACACAACATATAGGTCGAACCGCTATAGATTGCCTTTTGCACCTTTCACTGGAGTAAAT CATCATGGACAGCCTGTCTTATTTGGTTGTGCTCTCCTGATTAATGAGTCCGAGGCATCTTTTGTCTGGCTGTTCGAAAC CTGGCTTGAAGCAATGTCAAGGCGACCTCCAGTTTCAATTACTACTGATCATGATAGGGTGATTCGTGGAGCCATCAACC ATGTCTTTCCTGATACCCGTCACCGATTTTGCAAGTGGCACATTTTTAAAGAATGCCAAGAGAAGTTGTCTCATGTGCTT TCTGAACACCATGATTTTGAAGCTGACCTCCATAAATGTGTTAACCTAACAGAGTCCATTGAGGAGTTTGAGTCTTGTTG GTCCTCTCTAATTGATAGGTATGGTCTCAGAGAACATGAATGGCTCCAAGAGATTTATGGTTATCGGCGGCAGTGGGTTC CAGTGTACTTGAGGGACTCATTTTTCGCAGAAATGTCAATAACACAACGGAGTGATAGCATAAACTCTTATTTTGATGGC TATATCAATGCATCAACAACACTTCAGCTTTTTGTTAAACAGTATGAGAAGGCTTTGGAGAGCCGTTATGAGAAAGAAGT CAAAGCTGATTATGACACAATAAACACTGCTCCACTACTGAAGACCCCATCTCCCATGGAGAAACAGGCAGCTGGAGTTT ACACAAGGAGGTTGTTTATCAAATTTCAGGAAGAGTTGGTTGAGACATTAACTTTCTTGGCAAACAAAGTAGGTGAAGAA GAAATGATTACTGTGTATAGAGTAGCCAAATATGGGGAAAGTCACAAGGCATACTTTGTCAGATTTAACTTTTCTGAGAT AAAAGCTACTTGTAGTTGCCAGATGTTTGAGTTTTCTGGTATAGTTTGTCGACATATATTGACTGTTTTTAGGGTGACAA ATATTCTTACCTTACCATCTCATTATATCTTAAAAAGATGGAGCAGGAATGCCAAAAGTGGTGTCATACTGGATGACCAT ACTACTGATTTGTTAAATGGTGGACAAGAATCTCTAACTATCCGATACAATAATCTTCGCCGTGAGGCCCTTAAGTATGC TGATAAGGGAGTAAGCTCTCCAAAAGTTTATGATGTGGCTATGAGTGCTCTTCGGGAGGCAGCAAATAAAGTGGAAGCTG CGTCAAAAAATGGTGGAAGACTGGTTATTTTGGATGGAGCTTGTAAAGAAGACCTTCATCAGGGAAACGAAGCAATAACA AGTTGTAGTAATGCTCAATTAAGTTCACAACTATCTTCGTCTACGGATGACCATGACAGAACAATTGAAAAGCTGACACA TCAACTTGACCGAGCAAGGAAGAAGTGTGAAGTTTATAGGTCCAACTTGCTGTCAATTTTAAAAGCCATTGACGAGCAGA AGCTAGAATTATCAGTTAAAGTTCAAAATATCAAGTTAGAGATGAAAGAGTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0352000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEFEPLALSNEVIEFDMIGLGDDAAAIDIEHPVEDDDEFVNGGNNDPVFAITNSAATGGPLIPGGGDSILEPCQGMDFES EEAAKAFYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRVEKERHLEGRVKRPRVETRVGCKAMLVVKIQDSG RWVVSSFVKEHNHELVPPDKVHCLRSHRHVSGPAKSLIDTLQGAGIGPSGIMSALVKEYGGITNIGFTERDCRNYMRSSR QRTLGGDTQILLDYFKSKEAENPSFLYAVQGDEDNCMSNILWVDHKAKTNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVN HHGQPVLFGCALLINESEASFVWLFETWLEAMSRRPPVSITTDHDRVIRGAINHVFPDTRHRFCKWHIFKECQEKLSHVL SEHHDFEADLHKCVNLTESIEEFESCWSSLIDRYGLREHEWLQEIYGYRRQWVPVYLRDSFFAEMSITQRSDSINSYFDG YINASTTLQLFVKQYEKALESRYEKEVKADYDTINTAPLLKTPSPMEKQAAGVYTRRLFIKFQEELVETLTFLANKVGEE EMITVYRVAKYGESHKAYFVRFNFSEIKATCSCQMFEFSGIVCRHILTVFRVTNILTLPSHYILKRWSRNAKSGVILDDH TTDLLNGGQESLTIRYNNLRREALKYADKGVSSPKVYDVAMSALREAANKVEAASKNGGRLVILDGACKEDLHQGNEAIT SCSNAQLSSQLSSSTDDHDRTIEKLTHQLDRARKKCEVYRSNLLSILKAIDEQKLELSVKVQNIKLEMKE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31669:SF153
1 789 789 0.0 –
PANTHER
PTHR31669
1 789 789 0.0
IPR031052
Pfam
PF03101
87 177 91 2.7E-34
IPR004330
Pfam
PF10551
298 390 93 1.6E-30
IPR018289
Pfam
PF04434
567 612 46 1.4E-9
IPR007527
ProSiteProfiles
PS50966
578 614 37 10.942
IPR007527
SMART
SM00575
589 616 28 1.6E-7
IPR006564
Coils
Coil
735 762 28 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0352000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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