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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR018289
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 158 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 8.054s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0059989.1
n.a. Far1-related sequence 10 isoform 1 [Theobroma cacao] gi|508781702|gb|EOY28958.1| chr0 19927302 19930291 +
2 domain predictions
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Lj0g3v0071399.1
n.a. FAR1-related protein [Medicago truncatula] gi|357490981|ref|XP_003615778.1| chr0 26178160 26181470 +
2 domain predictions
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Lj0g3v0084509.1
n.a. far-red impaired response protein-like [Oryza sativa Japonica Group] gi|51535335|dbj|BAD38595.1| chr0 33635262 33636720 -
2 domain predictions
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Lj0g3v0126619.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Brachypodium distachyon] gi|357116326|ref|XP_003559933.1| chr0 56965203 56966467 -
2 domain predictions
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Lj0g3v0135969.1
n.a. FAR1-related sequence 5 isoform 4 [Theobroma cacao] gi|508775859|gb|EOY23115.1| chr0 62574764 62576555 +
2 domain predictions
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Lj0g3v0136299.1
n.a. PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Cicer arietinum] gi|502111329|ref|XP_004494023.1| chr0 62700354 62701538 -
2 domain predictions
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Lj0g3v0170049.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 9-like isoform X1 [Cicer arietinum] gi|502100172|ref|XP_004491653.1| chr0 81383667 81390730 +
2 domain predictions
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Lj0g3v0232569.1
n.a. FAR1-related protein [Medicago truncatula] gi|357491091|ref|XP_003615833.1| chr0 120716225 120718246 -
2 domain predictions
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Lj0g3v0248799.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 12-like [Vitis vinifera] gi|359488119|ref|XP_002273089.2| chr0 128936030 128937821 -
2 domain predictions
 –
Lj0g3v0304669.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Vitis vinifera] gi|225452218|ref|XP_002271204.1| chr0 158683441 158688221 +
2 domain predictions
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Lj1g3v1363180.1
n.a. n.a. chr1 16356045 16361616 +
2 domain predictions
 –
Lj1g3v4251260.1
n.a. n.a. chr1 50190988 50198617 -
2 domain predictions
 –
Lj1g3v4251280.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Glycine max] gi|356528708|ref|XP_003532941.1| chr1 50195744 50198203 +
2 domain predictions
 –
Lj1g3v4997260.1
n.a. Mutator-like transposase isoform 1 [Theobroma cacao] gi|508719110|gb|EOY11007.1| chr1 60710939 60714686 -
2 domain predictions
 –
Lj1g3v4997260.2
n.a. Mutator-like transposase isoform 1 [Theobroma cacao] gi|508719110|gb|EOY11007.1| chr1 60710939 60714686 -
2 domain predictions
 –
Lj2g3v1573090.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] gi|356540888|ref|XP_003538916.1| chr2 25050422 25055080 -
2 domain predictions
 –
Lj2g3v1573090.2
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] gi|356540888|ref|XP_003538916.1| chr2 25050422 25055080 -
2 domain predictions
 –
Lj2g3v2173070.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] gi|356554576|ref|XP_003545621.1| chr2 32663865 32664454 -
2 domain predictions
 –
Lj2g3v2315090.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Fragaria vesca subsp]. vesca] gi|470113039|ref|XP_004292735.1| chr2 33576448 33577257 +
2 domain predictions
 –
Lj2g3v2959580.2
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 3-like [Glycine max] gi|356499263|ref|XP_003518461.1| chr2 38321947 38330645 -
2 domain predictions
 –
Lj2g3v3413360.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] gi|356553419|ref|XP_003545054.1| chr2 43175445 43180582 -
2 domain predictions
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Lj3g3v1993830.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] gi|356554576|ref|XP_003545621.1| chr3 25742673 25744541 +
2 domain predictions
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Lj3g3v2027410.1
n.a. n.a. chr3 25946159 25949597 -
2 domain predictions
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Lj4g3v0070730.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 8-like [Glycine max] gi|356555835|ref|XP_003546235.1| chr4 458000 463422 -
2 domain predictions
 –
Lj4g3v0070880.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Glycine max] gi|356558023|ref|XP_003547308.1| chr4 471879 475670 -
2 domain predictions
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Lj4g3v2120630.1
n.a. TPA: FAR1-domain family sequence [Zea mays] gi|414886878|tpg|DAA62892.1| chr4 29136216 29139690 +
2 domain predictions
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Lj4g3v2249010.1
n.a. MuDR family transposase isoform 1 [Theobroma cacao] gi|508715027|gb|EOY06924.1| chr4 30958394 30963343 +
2 domain predictions
 –
Lj5g3v1361530.1
n.a. Mutator-like transposase isoform 1 [Theobroma cacao] gi|508719110|gb|EOY11007.1| chr5 20805932 20810382 +
2 domain predictions
 –
Lj5g3v2110900.1
n.a. PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Glycine max] gi|356534293|ref|XP_003535691.1| chr5 30186709 30191029 -
2 domain predictions
 –
Lj6g3v1038750.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Cicer arietinum] gi|502134082|ref|XP_004501994.1| chr6 11602445 11608810 +
2 domain predictions
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Lj6g3v1525990.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Glycine max] gi|356532535|ref|XP_003534827.1| chr6 17613178 17617222 -
2 domain predictions
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Lj6g3v1722710.1
n.a. Far1-related sequence 10 isoform 1 [Theobroma cacao] gi|508781702|gb|EOY28958.1| chr6 19527022 19529291 +
2 domain predictions
 –
Lj6g3v2245590.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] gi|356553419|ref|XP_003545054.1| chr6 26106716 26111275 +
2 domain predictions
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LotjaGi0g1v0001000_LC.1
n.a. Protein FAR1-RELATED SEQUENCE 11; TAIR: AT1G10240.1 FAR1-related sequence 11; Swiss-Prot: sp|Q9SY66|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11; TrEMBL-Plants: tr|I1L7C4|I1L7C4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi0g1v0001000_LC LjG1.1_chr0 1625667 1628226 -
2 domain predictions
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LotjaGi0g1v0001000_LC.2
n.a. Protein FAR1-RELATED SEQUENCE 11; TAIR: AT1G10240.1 FAR1-related sequence 11; Swiss-Prot: sp|Q9SY66|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11; TrEMBL-Plants: tr|I1L7C4|I1L7C4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi0g1v0001000_LC LjG1.1_chr0 1625667 1628258 -
2 domain predictions
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LotjaGi1g1v0000400.1
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|V7BDM7|V7BDM7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0000400 LjG1.1_chr1 306483 311877 +
2 domain predictions
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LotjaGi1g1v0057900_LC.1
n.a. Protein FAR1-RELATED SEQUENCE 3; TAIR: AT2G27110.1 FAR1-related sequence 3; Swiss-Prot: sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3; TrEMBL-Plants: tr|I1JIP9|I1JIP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0057900_LC LjG1.1_chr1 8083262 8093601 +
2 domain predictions
 –
LotjaGi1g1v0057900_LC.2
n.a. Protein FAR1-RELATED SEQUENCE 3; TAIR: AT2G27110.1 FAR1-related sequence 3; Swiss-Prot: sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3; TrEMBL-Plants: tr|I1JIP9|I1JIP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0057900_LC LjG1.1_chr1 8083308 8091215 +
2 domain predictions
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LotjaGi1g1v0104600_LC.1
n.a. Transposon protein, putative, mutator sub-class; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1; TrEMBL-Plants: tr|A0A1B5Z7A3|A0A1B5Z7A3_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0104600_LC LjG1.1_chr1 16118527 16125390 -
2 domain predictions
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LotjaGi1g1v0116900_LC.1
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A151SA71|A0A151SA71_CAJCA Protein FAR1-RELATED SEQUENCE 5; Found in the gene: LotjaGi1g1v0116900_LC LjG1.1_chr1 18366545 18369821 -
2 domain predictions
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LotjaGi1g1v0147500.1
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A0R0HZT4|A0A0R0HZT4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0147500 LjG1.1_chr1 25209326 25215227 +
2 domain predictions
 –
LotjaGi1g1v0155200_LC.1
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A151RQA5|A0A151RQA5_CAJCA Protein FAR1-RELATED SEQUENCE 5; Found in the gene: LotjaGi1g1v0155200_LC LjG1.1_chr1 27537007 27540396 -
2 domain predictions
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LotjaGi1g1v0163100_LC.1
n.a. Mutator-like transposase-like protein; TAIR: AT3G05850.1 MuDR family transposase; Swiss-Prot: sp|Q97KM2|AROA_CLOAB 3-phosphoshikimate 1-carboxyvinyltransferase; TrEMBL-Plants: tr|A0A1B5Z7A3|A0A1B5Z7A3_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0163100_LC LjG1.1_chr1 30657832 30660900 -
2 domain predictions
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LotjaGi1g1v0182500.1
n.a. Transposon protein, putative, Mutator sub-class; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|Q9JKS6|PCLO_RAT Protein piccolo; TrEMBL-Plants: tr|A0A0B2SI26|A0A0B2SI26_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0182500 LjG1.1_chr1 35595957 35600389 +
2 domain predictions
 –
LotjaGi1g1v0218400_LC.1
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A151SA71|A0A151SA71_CAJCA Protein FAR1-RELATED SEQUENCE 5; Found in the gene: LotjaGi1g1v0218400_LC LjG1.1_chr1 48314552 48331047 +
2 domain predictions
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LotjaGi1g1v0218400_LC.2
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A151SA71|A0A151SA71_CAJCA Protein FAR1-RELATED SEQUENCE 5; Found in the gene: LotjaGi1g1v0218400_LC LjG1.1_chr1 48322818 48330527 +
2 domain predictions
 –
LotjaGi1g1v0218400_LC.3
n.a. Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G38180.1 FAR1-related sequence 5; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|A0A151SA71|A0A151SA71_CAJCA Protein FAR1-RELATED SEQUENCE 5; Found in the gene: LotjaGi1g1v0218400_LC LjG1.1_chr1 48322899 48330527 +
2 domain predictions
 –
LotjaGi1g1v0267700.1
n.a. Transposon protein, putative, Mutator sub-class; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6; TrEMBL-Plants: tr|A0A1B5Z7A3|A0A1B5Z7A3_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0267700 LjG1.1_chr1 65393227 65399738 -
2 domain predictions
 –
LotjaGi1g1v0267700.2
n.a. Transposon protein, putative, Mutator sub-class; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6; TrEMBL-Plants: tr|A0A1B5Z7A3|A0A1B5Z7A3_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0267700 LjG1.1_chr1 65393332 65399700 -
2 domain predictions
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LotjaGi1g1v0267700.3
n.a. Transposon protein, putative, Mutator sub-class; TAIR: AT1G06740.1 MuDR family transposase; Swiss-Prot: sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6; TrEMBL-Plants: tr|A0A1B5Z7A3|A0A1B5Z7A3_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0267700 LjG1.1_chr1 65393415 65397775 -
2 domain predictions
 –