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LotjaGi2g1v0362800.1

Overview

Field Value
Gene ID LotjaGi2g1v0362800
Transcript ID LotjaGi2g1v0362800.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Proteasome subunit beta type; TAIR: AT1G56450.1 20S proteasome beta subunit G1; Swiss-Prot: sp|Q7DLR9|PSB4_ARATH Proteasome subunit beta type-4; TrEMBL-Plants: tr|I1NC65|I1NC65_SOYBN Proteasome subunit beta type; Found in the gene: LotjaGi2g1v0362800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:86023353..86028460) extracted from Lotus japonicus Gifu genome v1.2.

AAAGTAGCGAACAATGAACTAATAAATAAAACCTTATGAAAAAAAAAAAGACAAAACCAAAACAATTTTCAGCGTACCAT TCCGATCTCGTAATTTTCACACCCCAATCTTGTTCCTCGCGATTGTTCATTCGACAAATCATGGGTTCGACAGAGAGAAC ACTGTATGTCTCCTCTCTCTTTCTCTCTTCACATTCACTCACTCACTCACGCGTTTGTTTTTCATGGAATTTTAGGTTTG TACAGTGATGACTGAAACTGAGAGACATATGTTATTTTTCGTTGACCTAAATTCTGCTTTGATGTTTAGGTACCCGTATG TGACTGGATCCTCTGTGGTTGCTATCAAGTACAAAGATGGGATTCTCATGGCTGCTGATATGGGAGGTCAGAATCCAATG CTAGTGCTAATGACATTGCAACTCCTATCCCTATTTTGCAGATTTCATTTATGTAGTATAGATAATCACATTATTTATTT ATTGCTGATCTTACTGTAGAGGCTTATTTTAACAGTCCAATTGTGGGTGATTTGAGTCAATTTTAGCTTATTTAGTGGAA TTGTGTGCTTCAGTTGTTTTCTTTTTTATTTTGTTGGTTTAATTGCTTTTTTAGCCTATTTTCACAATTTTGTTCCATGT AGTTTCAATTGCTCCAATCAAGTCCCCTAGTTTCAAAATTAAACAAATGTCGTCTTGACTCTTGACCTTAACCTACTTAA CAAAAAGAAAAAAACTTGACATGTCAATTTTTTATGTGGATGATGACAAGTTAAGGTCATCTATGTCATTTACCGTGTGA AAAAAGTGATTAATGTCACCTTTTTTTAGTTAGTTATTGGATGAAAAATTAATGTCAGGAACACATTTGCTCAATTTTGA AAGTAGAGGGACTTTATTGAAGCAGTATATATACCAAAATCACGCATTTGCGAAACTATAGGACTTAAAAATGTCATTAA GCTTGTTTTGTTAAAATACACAGACATGCCTTATTTTATGTTGATGTTTTACTTTTATTAAATCATGATTCCTCAGAAGT GATTATTTCAGTAGTGAACTAGTAATGTTCTGAATCAAAGTCGTGTTAGTAGTATGCAGTTCAACCACCCCCACCAAAGT TCTCACTCACCCTGTTTCTTATGTCAATGATAGGTTCCTATGGGTCTACCCTGCGATACAAGAGTGTTGAGCGTTTGAAG TCTGTTGGGAAACATTCCCTTCTTGGTGCTAGCGGGGAAATAAGTGACTTTCAGGAGATCCTACGCTACCTCGATGAGCT TATGTAAGCCTTGGTTATCTGTCATAAGATAAGGACAGTAGAATCTTCTCAATTAATTGCTTTGCATTTGCTATGTTTCC ATACCTTGATTTATTTATTTTGTCTCATGTCAAACTTATCAGAAATGAGTCCATCCATGTATCCACCCCCTAGTTATTTC TGATTTGATTACTTCAGCAATTCCATGTAAGTTTTGATTTTGAATTTTGACTGTTGCAGCCTTTCTGACAACATGTGGGA TGATGGGAACTCTCTTGGGCCTAAGGAGGTGCACAACTATTTAACTCGAATGATGTATAATAGGCGTAACAAGTTCAACC CATTATGGAACTCCCTTATACTTGGTGGTGTGAAGAATGGACAAAAGTACCTTGGAATGGTATGCCTTGGCCTGTATTTT TATATTGTTCAACAATGAGTAGCCTGCAACTTTACTCAGTTTTGTTGCTTGTGAATCTTTACCAGGTTAGCATGATTGGA GTTAATTTTGAAGACAATCATATAGCCACTGGGCTGGGAAATCATCTTGCTAGACCAATTCTCCGTGATGAGTGGCATGA AAATTTGACCTTTGAAGAAGGTGTCAAGTTGCTGGAAAAATGCATGCGTGTGTTATTATATCGTGATAGATCTGCTGTCA ACAAGATACAGGTTTTCTTCTTTCCCCTTTTTCTTCTTGCATCCATCTTCCCCAACCCTGTCCTCCCAAGCGCATAGAAC ATAAATGTGTAGGCAGTGTAGCTAAATCTTTAGAAAGCTGCAAAGGGGGATTAATCCACATATAGAGTGTAGAAATATGC TCTCTACTAGGGTCTCAGTGAAAAAATGGCATACAAAAGGAATCAGAGTATCATCATCAAAGAGTAGATTAAAATTTCAC AAGTTGTAATGGAATTGATATATCAACATTTTGTCATACAATTTTCTAACACTTTTATGATACTGCAAAGAAGTTTGATT AGTTTTAATTTTTTGGGTTATCAATGAAATCGGCAGGGGGTTTAGGGGACATATAATATATTTTTCTTGGTTTCTGCTAG GACTTTTTCCTGTAATTCTCTTGGTTCCTTTTGCATTCAGCCTTTGTTAGAAAGCCAATTTGTTTTTTCAGTTACAAATT TTAGATTTCAAATTTGTCCCTTGAGATGCATATTCCGTAGGTCAAAACATTTGAAAGGGAGTTTAGCTAGTGGGGCAACT GGTAAGTGATGGCTCCCATGGTACCTTTTCTCAACTTGTAATTGCATCCTCATTTGGTTTAATCCTCACTTGGCACAGAA AGATATTAAAAGAAAATAGTTAAAAGGTTTTCTAAGCACATACAACTTAGCTATATTATGTGAAATTTATATCTTTCTGA GTATGTTTCCTTTCTTTTCCTTGGCATGGGTAGAATAATTTGATCTGTCTTCCCAACCCTCTTTTCCTCGATCACTGCTC CTCTGCGACACCAACCCCAACAATGTCAAAATTTGACCATTTTAATATAAATTAAACTCGCTTCTCAGTATTTAACTGAG TGCTCTCATGCGAACTACTTTGCAAATATACTGACAAAATTATTTTAATACGTAGAAAAGTAAGTAAACAGTTTCTGTTT CCTCTGTCGAAACCCACCATTCAGTAGTCATCTTTCTTCTATATTGCAAACTCCATTAACAAAAAAATCCACACTTTCCT CTTTCGTTTTTTCCCACACCATCCAAAAATCAATCCCTTTGTCACTATCTTTCTAAAATGACAAGTTATCCACACTCACT TGGGTATATTGGCTCTCCAAGCTATGGATTTTTAATGAGTTATGATTCATACACACCTCCACCTCTTTTCCACCACCTTT TTCTTTCCATTTCTCTCTTCTCTATCAATCAAATCATCTATCACATCTTTACCTTCTCTCTCCTGTCTTCCTATCTCTCT TCCTCCACCTCTTCACACCTAAAAAATGAGGTGTGAACAAAAGATTATCCATTTTTAAAATCCGCCAATAAACCTCATTC ATCTGCGACAACCCTCCTTCCTCCGGTCACAAAGGTGGGTGTTGTTGTGGCCGCCGGGAGCTTGGGCTGAACGAGACTCC CTTCCACAGAAGGTGCAGATGTAGTGGTTCCCTTGATGCTCCTGGTGTCATCTGTGAAGGATCTGATCTCCCACGACTCG TCTTCTGCTTCCTCACGGTGCTCCCTGTTAGGGTTCCACATCAATAAGGCGTAGGTGGTGAGGAGCTAGGGTTTGGTTGG GGCTGGTGGTTTTGGAGTTGTGATGATGATAATTTATGGATATGGTACATGGACACAAAGGGATCTCTGCTGCAGCCATG TACTGTCACTGCCATTTAAGATAGATGGTGGGTAGATTAGTGATGGGGATGAAATTGGAGGAGAACAGTTTATTAATTAG GGGAATGGGGTTACAATTAACGAAGGGGTCATGACAAAATTAAGCTTTTAAAATATCAAATAGATGCCTTTGGAAGTCGG CGCAGTGTCTTTGAAACAATGATTTGTTGTACATCAATTTCGTTCTCTAGCTCCAGGGTGTACTGGAGTGCAGCCCACAG GTTTTGCAAGTTAGAGGAAGCCTCAAGTTACAGGTTTAAATCTGCACCACTGTGTCGTTGTTGGGGTCGGCGGCACTGAG TAGTAGCAGTGGAAGAGGAAGTGCTGCCGCCTATAGTAGAGTGGGGAAGAAGAACTGTCCATAGCAGTGTCTGATTGGGA TGACATGGACTCTAACTAAGTTAATTTATCCATGTCATTGCAAAGTCAGAAAACGCTGTTAAATATTGGATGGAAAATTA ACTGGAGAACAAAATTTGTTTGATTAGAAAACTCGAGGGACTTAAATCAAGCGAAAATAGTAGGGGGTTCAAAATCACCT AAACATCATACTAGGAGGGCCAAAAGTCTATTTAAGCCAAACGGATAGTAGGTTATTTGCAAAACTAACTGGAAGATGAA AACACCTTAGTGGATGGTTGCTAGTCAGTGTATGTAATTGTAAAAAATATCTTTTTGTTTTAACTTTCTCATATTCGTTA TAATTTGTTGGATTCTTAATATAAATTCCAATTGACTTGAGTGTATTATTCATTGCTTTATCATGATTAGTGCATCTGTT ATGTGGGATTCACAGATTGCTAAAATGACTGAAGAAGGTGCTACTATGTTCCCCCCATTCTCGCTGAAGACATACTGGGA GTTCTCTGCTTTCAGGAATCCTACATTGGGTGCTGAAGGATCGTGGTAGCTGGCTAGACATGAAATCAAATGAACCTGAA ATTTCAAGTGATATATGAAATGGATTCCAATCCCTATACTTCATTGTTGTGTTAAATGAGTATGAAATGAAATAGCCAAC GGGAGTTTGTATGTTTCATGAAAATTGTTTATGTTACTTGATATCTATTTCATAGTAATGGTAGTTCAACTCTGTAGAAG AAGGCTACTATAACTTAAAATTCACTGTCAGTTTACCCTTGAATTATTGTGTCACCGTTGCACTTTTCCTTGTTTCATTT CTTGGTTGCATGGAATAATTAATTTTATTATACCTAAATAATTGACGTATATAAATTGAACTCTAAAGAAACAAATGAGT TGGTGAAGTGTAGTAGTTTATCAAGTAAGTGGTTCGGTGTTCGAATCTCAAATTTGAGTGCAAAAACCTTCTTAGCTTCT CTCCAACATTTTATACATTGACTGTGGAGCAAATAATTAGTCTAACGTTTACCAACTGCAAAAATAACCGTAAAACATGT TTTTTGTCCCACTAGAAGTAACCAGGGTTATTAATAACAGATAGTGTAGCGGCAAACCCAAAATACGT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0362800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAAAAAAAAAAGACAAAACCAAAACAATTTTCAGCGTACCATTCCGATCTCGTAATTTTCACACCCCAATCTTGTTC CTCGCGATTGTTCATTCGACAAATCATGGGTTCGACAGAGAGAACACTGTACCCGTATGTGACTGGATCCTCTGTGGTTG CTATCAAGTACAAAGATGGGATTCTCATGGCTGCTGATATGGGAGGTTCCTATGGGTCTACCCTGCGATACAAGAGTGTT GAGCGTTTGAAGTCTGTTGGGAAACATTCCCTTCTTGGTGCTAGCGGGGAAATAAGTGACTTTCAGGAGATCCTACGCTA CCTCGATGAGCTTATCCTTTCTGACAACATGTGGGATGATGGGAACTCTCTTGGGCCTAAGGAGGTGCACAACTATTTAA CTCGAATGATGTATAATAGGCGTAACAAGTTCAACCCATTATGGAACTCCCTTATACTTGGTGGTGTGAAGAATGGACAA AAGTACCTTGGAATGGTTAGCATGATTGGAGTTAATTTTGAAGACAATCATATAGCCACTGGGCTGGGAAATCATCTTGC TAGACCAATTCTCCGTGATGAGTGGCATGAAAATTTGACCTTTGAAGAAGGTGTCAAGTTGCTGGAAAAATGCATGCGTG TGTTATTATATCGTGATAGATCTGCTGTCAACAAGATACAGATTGCTAAAATGACTGAAGAAGGTGCTACTATGTTCCCC CCATTCTCGCTGAAGACATACTGGGAGTTCTCTGCTTTCAGGAATCCTACATTGGGTGCTGAAGGATCGTGGTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0362800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKKKKTKPKQFSAYHSDLVIFTPQSCSSRLFIRQIMGSTERTLYPYVTGSSVVAIKYKDGILMAADMGGSYGSTLRYKSV ERLKSVGKHSLLGASGEISDFQEILRYLDELILSDNMWDDGNSLGPKEVHNYLTRMMYNRRNKFNPLWNSLILGGVKNGQ KYLGMVSMIGVNFEDNHIATGLGNHLARPILRDEWHENLTFEEGVKLLEKCMRVLLYRDRSAVNKIQIAKMTEEGATMFP PFSLKTYWEFSAFRNPTLGAEGSW
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF001213
6 261 256 3.9E-93
IPR016295
PANTHER
PTHR11599
38 254 217 3.9E-108 –
PANTHER
PTHR11599:SF5
38 254 217 3.9E-108
IPR016295
Gene3D
G3DSA:3.60.20.10
42 256 215 2.4E-56
IPR029055
SUPERFAMILY
SSF56235
44 251 208 1.36E-54
IPR029055
Pfam
PF00227
48 230 183 1.0E-31
IPR001353
CDD
cd03760
48 241 194 1.40952E-111
IPR016295
ProSiteProfiles
PS51476
49 231 183 37.459
IPR023333
ProSitePatterns
PS00854
53 100 48 -
IPR016050

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004175
Molecular function Endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
Subterm of
GO:0004298
Molecular function Threonine-type endopeptidase activity Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
Subterm of
GO:0005839
Cellular component Proteasome core complex A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
Subterm of
Part of
GO:0051603
Biological process Proteolysis involved in cellular protein catabolic process The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0362800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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