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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0374700 |
| Transcript ID | LotjaGi2g1v0374700.11 |
| Related isoforms 10 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Scarecrow transcription factor family protein; TAIR: AT2G29060.1 GRAS family transcription factor; Swiss-Prot: sp|P0C883|SCL33_ARATH Scarecrow-like protein 33; TrEMBL-Plants: tr|G7JUT6|G7JUT6_MEDTR GRAS family transcription factor; Found in the gene: LotjaGi2g1v0374700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87186451..87190354) extracted from Lotus japonicus Gifu genome v1.2.
ATCACTACTTACAAAGAAACTGAGAAAAAATAAACACACCATCCAACACCTAAGCCATTTGCTAAACGACAGGAAGCAAA GGCACTGATACTGATACATACCAACATTCCATAAACTAACACTCACACAGGTCCATAGTGTGACTCAAATTCTCCACTGC AATACCCGATACAGAACTTCAACAGTAGGCTGGTGACAGGCACAAACCAGCAAAAAAATTAAGATCAGACAAAATCCAAA TAGTCAAGATCAGAGATACTCTAGGCAGTTTCTCGGATTTGTGCTCCAATCACTCCAAGATACGCAGAACTTTCGGTTTT TGGCTCTCAACCACTTCCAAGCTCTTACCTGAGCTAACTCCCACACTCTCTCTGCATCTTTCACCCCTTCTTTAAATATA ACATTGTTTCTACACTGCCAAATAGACCATAAGACTGCCACCGATCTTAAAAAATAATACATCCATCTAAAAGACATCCA ATTTTTCCCTCCATCACTCTCTTTCTTAAATGTCTGCATCTCTACAAATCATTTTCTTTCTTAAAAAGAATGAACAATAA TTTAGTTCAGGGTTAGGTGAATTCAAATCTTCCTCACAACCATATCTAACTAGTTTCTCGCATGGCTCCAATTTTCTTTT ATGTTCATGCTTTTTTTTTAACAGAAGCATTGAGTATTTGACTTAGGCATCGGTGAGTGTTTCTAAAATAGGAAAGGAAG ATGGATCCAACTTTTTATGGGGACAGCGATTTCACAAACGGATACCAGTTTTGTGAAGAAGGGAACATATTTGTCTCGGA TCCAAATCCATATGCAGCATACTGGGATGTGTATCATCAACATGTTGACCCTCTTGGTTTTGCAGCAAATACAAGCTCTG TAGAAGAAGGTTCTGTGACATCCATGTCCATGAACTCGGTGACAGATCCTTCTCTAGAAGACACTGACTTCTCAGAAACC ACCAAGTTCATAAGCCAAATCCTGATGGAAGAGAACCTTGAACAGGGTCCATTTTATGACTCCTTGAGCCTGCAACTCAC AGAGAAATCATTCCATGATGCTCTCATAGAAAACAACTCATCTCTATCGCCCAATCAACACCACTTCAATGTTCGAAGCC CTTACTGTGAAACAACTAGCAGTGACAGTGACAACAGCAGCAATTTACACTACAATTCTGGTGAGTTGAATTCCCCTCCT CTGGATACCCCTGTTGCTGTTATTGGTAATCATGCTTTTCAACTTAATTCTCATGGACTGCTAGATTTGGATTCTTCTGT TACCAAACCATTGGCGCAAAATATTTTCAGTGATGCAGATTCTGTCTCCCAATTCAGGAGAGGGTTAGAGGAAGCTACCA AGTTTCTTCATCCTCCAGAACCCCTGATTGAGACCGGTCTAGATTCAAGGGGAGAATCATCCAATATAGTTGAGGAGAAT TCTTTTGGGTTAAAGGGTCGTAGAAAGAGCCGTGAGCGTGAAGAAAGTGATTCTAATGAAGAAGGGAGAAGTACCAAGCA ATCAGCAGTTGGTGTTGTTGATGAGGATGACTTATCTGATATGTTTGAACGAGTGCTGATTAATATGGAACAATTACCAC TTGGTAACGAACACGATTCCATAGAGAGTGGCTTAGCAAAAGAGAAACAGCAAGGTGAAAAGCCACCTTCATCTGATGGA AGGAAGGCTCATCCAAATAAACAAGGCAGGAAGAAGGAAACGGTGGACGTGAGGGCTCTTCTGCTTCTTTGTGCACAAGC TATTCATACCAATGATAACAGGGCTGCTAATGAACTTCTAAAGCAGATAAGACAGCATTCTTCTCCCTTTGGTGATGGGT CACAAAGATTGGCTCATTACTTTGCGAATGGCCTTGAGGCACGCTTGGTTGGGGATGTTACCGGTGCACAATTATTTTAT TCTACTCCAACTCCAACCCACAAGACAACCTCTGCTGATGATTTCTTCGAAGGTTTCCAAGTTTATCTATCTCATAACCC GCACAAAAGGTTTGCACATTTCTATGTTAACAAAATGATTAAGAAAGCATCTGCAAAAGCAGAAACTCTTCATATTATTG ATTTTGGAATCTCATATGGCTTCCAGTGGCCATTACTCATCAAGTTTTTATCAGAAAGAGATGGAGGACCTCCCAAGCTG AGGATCACAGGGATAGAGTTCCCTTTACCTGGCTTTCGCCCCACACAAAAAATTGAGGAGACTGGTCGTCGTTTGGCTAA CTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACACTGCCATAGCATCACGGAACTGGGAAACCATTCGAGTTGAAGACC TTAGAATTAAGAGCCATGAGTTTGTTGCTGTCAACTCCATGATGAGGTTCAAGAATTTGCTGGATGAGACTATTGAAATG AACAGTCCCAGAGATGCTGTTCTGCTTTTGATCAGGAAGATAAATCCAGATGTTTTTGCTCAGTCCATCATTAATGGATC TTTCAGTACCCCTTTTTTTGCCACACGGTTTAGGGAGGCCTTGTTCCATTTTTCTGCTGTTTTTGACATGCTTGACACTG TCATATCCCGGGAAAACCAATGGAGGGTGATAGATGAGAGGGAGGTTGTGGGTCGTAGCTCTATGAATGTGATAGCATGT GAAGGTTTGGAGAGGATTGAGAGGCCTGAGACATACAAACAGTGGCAGGTTAGGAACACAAGGGCTGGTTTCAAGCAGCT TCCTCTGAACCAGAAATTGATGGCCAAGTTTAGGAGCAAGTTAATGAAATGGCACCCTGATGATTTTGTGATTGATGAAG ACAGCAATTGGATGCTTCAAAGTTGGAAAGGACGCATTTTGAATTGTTCTACCATCTGGGTGCCTGCATAATGAACTTAT CACACACTTGAATGTCAGGTAACTATAAGAGGAGGGGGTGGGTAATTTGTAAGTAGAAGGATTTTGTTTCTGTAAATGTT GCTATACTTAGCTCCCTTCTTTTTTCTTTTTCCCTTCTACTCTCTACTTTCTGTAAATGAAGTACCCCTTGTACTTCATT CAATATAATTCTGATTGCTTATCAAAAAAAAAAGGTAACTATAAGAATCTGACCTGGGTTTGAACTTTCTCCATGTTTTT TGAGTCATAGTCCTACCAATACTTGATTACTTGAGATACTTCTGCTTGTGTCTAGCAATGAGGAAGCTTATTTTGCTACT TAAACGGTTTCTGGTTCTGCAATTTCCTTCCAACTAAACCAAACAGCAGTAGCAGGAACCAGTGATTATCATTTTTCTCC AAACGAATTACTGTGCCTTATAAATTGAGATGATACTAATTCAAATTGTTCCAGAGTAATTTGAAAATGAATTACTCATT ATCCAAGGATTATTCACCCTAGCAATTTATGGAATTGGTGCAGAAACTCATCGGACTCTCAACCCTCTGCAGAAGCCCAA TGACGCCGTAGTGCAGCTTTAGTGGCGCTTTGCTTCGAAAACACAAACAACCATAGCTTCATCAACAACAGCAAGCACAG GGCGTAATCATGGTTGAACAGAGACACAGTAACAGCTGCAAGATCTGCATTAAATAATATTATGTAGCTATTTTTGGCTT ATATCATTATCTCATGTTTTAGATTGAACCAGTTCACATACCCAGCTAGTTTTTTTTAACAATTCATGCAAATATATTAA GAAATAGGCATAGACATACCCAGCTAGTTTATGGGAGTAAAATGAGTTATTTGGGACCCAAGAATTAACAGGTGAACTGA TGATTGAAACATTGAATATTAAACAAATATTGTGCTAGGTTTAACAAAGTTTAAAAATGTGGAACGATTAATAAAATGGT GAAGACACTGATTCACAATTCATTGGTTCAGTTATGATTGAGCTATAATATATCAAATGATTTA
CDS sequence (LotjaGi2g1v0374700.11) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCAACTTTTTATGGGGACAGCGATTTCACAAACGGATACCAGTTTTGTGAAGAAGGGAACATATTTGTCTCGGA TCCAAATCCATATGCAGCATACTGGGATGTGTATCATCAACATGTTGACCCTCTTGGTTTTGCAGCAAATACAAGCTCTG TAGAAGAAGGTTCTGTGACATCCATGTCCATGAACTCGGTGACAGATCCTTCTCTAGAAGACACTGACTTCTCAGAAACC ACCAAGTTCATAAGCCAAATCCTGATGGAAGAGAACCTTGAACAGGGTCCATTTTATGACTCCTTGAGCCTGCAACTCAC AGAGAAATCATTCCATGATGCTCTCATAGAAAACAACTCATCTCTATCGCCCAATCAACACCACTTCAATGTTCGAAGCC CTTACTGTGAAACAACTAGCAGTGACAGTGACAACAGCAGCAATTTACACTACAATTCTGGTGAGTTGAATTCCCCTCCT CTGGATACCCCTGTTGCTGTTATTGGTAATCATGCTTTTCAACTTAATTCTCATGGACTGCTAGATTTGGATTCTTCTGT TACCAAACCATTGGCGCAAAATATTTTCAGTGATGCAGATTCTGTCTCCCAATTCAGGAGAGGGTTAGAGGAAGCTACCA AGTTTCTTCATCCTCCAGAACCCCTGATTGAGACCGGTCTAGATTCAAGGGGAGAATCATCCAATATAGTTGAGGAGAAT TCTTTTGGGTTAAAGGGTCGTAGAAAGAGCCGTGAGCGTGAAGAAAGTGATTCTAATGAAGAAGGGAGAAGTACCAAGCA ATCAGCAGTTGGTGTTGTTGATGAGGATGACTTATCTGATATGTTTGAACGAGTGCTGATTAATATGGAACAATTACCAC TTGGTAACGAACACGATTCCATAGAGAGTGGCTTAGCAAAAGAGAAACAGCAAGGTGAAAAGCCACCTTCATCTGATGGA AGGAAGGCTCATCCAAATAAACAAGGCAGGAAGAAGGAAACGGTGGACGTGAGGGCTCTTCTGCTTCTTTGTGCACAAGC TATTCATACCAATGATAACAGGGCTGCTAATGAACTTCTAAAGCAGATAAGACAGCATTCTTCTCCCTTTGGTGATGGGT CACAAAGATTGGCTCATTACTTTGCGAATGGCCTTGAGGCACGCTTGGTTGGGGATGTTACCGGTGCACAATTATTTTAT TCTACTCCAACTCCAACCCACAAGACAACCTCTGCTGATGATTTCTTCGAAGGTTTCCAAGTTTATCTATCTCATAACCC GCACAAAAGGTTTGCACATTTCTATGTTAACAAAATGATTAAGAAAGCATCTGCAAAAGCAGAAACTCTTCATATTATTG ATTTTGGAATCTCATATGGCTTCCAGTGGCCATTACTCATCAAGTTTTTATCAGAAAGAGATGGAGGACCTCCCAAGCTG AGGATCACAGGGATAGAGTTCCCTTTACCTGGCTTTCGCCCCACACAAAAAATTGAGGAGACTGGTCGTCGTTTGGCTAA CTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACACTGCCATAGCATCACGGAACTGGGAAACCATTCGAGTTGAAGACC TTAGAATTAAGAGCCATGAGTTTGTTGCTGTCAACTCCATGATGAGGTTCAAGAATTTGCTGGATGAGACTATTGAAATG AACAGTCCCAGAGATGCTGTTCTGCTTTTGATCAGGAAGATAAATCCAGATGTTTTTGCTCAGTCCATCATTAATGGATC TTTCAGTACCCCTTTTTTTGCCACACGGTTTAGGGAGGCCTTGTTCCATTTTTCTGCTGTTTTTGACATGCTTGACACTG TCATATCCCGGGAAAACCAATGGAGGGTGATAGATGAGAGGGAGGTTGTGGGTCGTAGCTCTATGAATGTGATAGCATGT GAAGGTTTGGAGAGGATTGAGAGGCCTGAGACATACAAACAGTGGCAGGTTAGGAACACAAGGGCTGGTTTCAAGCAGCT TCCTCTGAACCAGAAATTGATGGCCAAGTTTAGGAGCAAGTTAATGAAATGGCACCCTGATGATTTTGTGATTGATGAAG ACAGCAATTGGATGCTTCAAAGTTGGAAAGGACGCATTTTGAATTGTTCTACCATCTGGGTGCCTGCATAA
Protein sequence (LotjaGi2g1v0374700.11) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPTFYGDSDFTNGYQFCEEGNIFVSDPNPYAAYWDVYHQHVDPLGFAANTSSVEEGSVTSMSMNSVTDPSLEDTDFSET TKFISQILMEENLEQGPFYDSLSLQLTEKSFHDALIENNSSLSPNQHHFNVRSPYCETTSSDSDNSSNLHYNSGELNSPP LDTPVAVIGNHAFQLNSHGLLDLDSSVTKPLAQNIFSDADSVSQFRRGLEEATKFLHPPEPLIETGLDSRGESSNIVEEN SFGLKGRRKSREREESDSNEEGRSTKQSAVGVVDEDDLSDMFERVLINMEQLPLGNEHDSIESGLAKEKQQGEKPPSSDG RKAHPNKQGRKKETVDVRALLLLCAQAIHTNDNRAANELLKQIRQHSSPFGDGSQRLAHYFANGLEARLVGDVTGAQLFY STPTPTHKTTSADDFFEGFQVYLSHNPHKRFAHFYVNKMIKKASAKAETLHIIDFGISYGFQWPLLIKFLSERDGGPPKL RITGIEFPLPGFRPTQKIEETGRRLANYCKRFNVPFEYTAIASRNWETIRVEDLRIKSHEFVAVNSMMRFKNLLDETIEM NSPRDAVLLLIRKINPDVFAQSIINGSFSTPFFATRFREALFHFSAVFDMLDTVISRENQWRVIDEREVVGRSSMNVIAC EGLERIERPETYKQWQVRNTRAGFKQLPLNQKLMAKFRSKLMKWHPDDFVIDEDSNWMLQSWKGRILNCSTIWVPA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 66 | 716 | 651 | 3.0E-289 | – | |
| PANTHER | 66 | 716 | 651 | 3.0E-289 | – | |
| MobiDBLite | 133 | 157 | 25 | - | – | |
| MobiDBLite | 217 | 274 | 58 | - | – | |
| MobiDBLite | 242 | 262 | 21 | - | – | |
| MobiDBLite | 304 | 332 | 29 | - | – | |
| ProSiteProfiles | 328 | 714 | 387 | 84.438 | ||
| Pfam | 338 | 713 | 376 | 2.5E-104 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0374700.11, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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