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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0378100 |
| Transcript ID | LotjaGi2g1v0378100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT4G35840.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1; TrEMBL-Plants: tr|I3S719|I3S719_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0378100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87520458..87521221) extracted from Lotus japonicus Gifu genome v1.2.
TTGTGTTATATGCAGATTGATGTTATTGGTAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATAGGTCCAGCCATGTT GAGTGCAGTTCAAAGTCAGGTAATTCACTTATAGCGTGTTTGGATCAGCTTCTCTTTTGTTAAAATTAATTCTAGCACTT AAAGCTACTTACGGTAGTTTTTTCCCTATGATTGATTCAGGCGACAAAATCAATCATGGGGAAAAAATAATCAAGTAGCT TTGCTGAGGTAATTGACTGTAATAAGTCCTTTGTCCTATCAGCTTCAAATTTGGTTGTACATTCTCTCACATTGCTGACA CCTCTGCTCTTCCTTATCAGATGGGTGCTGTTGAAACTGGCTTTGATGAGGTTCAGAACATCTTTGACACCGGCTGCGGC GGTGCAAAAGGTTTATCAGGAGATTCAGTAGAAAAAATCCCAAAAATCAAAATTACTACTGACAACAATGCTGATGCATC TGGTGAAAGAGTTTCCTGTTCAGTTTGCCTCCAGGTTGGTCTTTAGCTTTTTGCAGTTTCTGTGGTTGTTAGCAATGGTT TACCTGTACCTTGAGCAGAGTGCTATTAAGCTTGTGTTTATTGGTATTGACATTGACATTTCTGAATTTGTGCTTATGCA GGACTTTCAGCTGGGAGAGACTGTTAGAAGCTTACCTCATTGTCATCACATGTTTCACCTACCCTGCATAGACAAGTGGC TCTTCAGGCATGGCTCTTGCCCATTATGTAGAAGGGATCTCTAA
CDS sequence (LotjaGi2g1v0378100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGATTGATGTTATTGGTAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATAGGTCCAGCCATGTTGAGTGCAGT TCAAAGTCAGATGGGTGCTGTTGAAACTGGCTTTGATGAGGTTCAGAACATCTTTGACACCGGCTGCGGCGGTGCAAAAG GTTTATCAGGAGATTCAGTAGAAAAAATCCCAAAAATCAAAATTACTACTGACAACAATGCTGATGCATCTGGTGAAAGA GTTTCCTGTTCAGTTTGCCTCCAGGACTTTCAGCTGGGAGAGACTGTTAGAAGCTTACCTCATTGTCATCACATGTTTCA CCTACCCTGCATAGACAAGTGGCTCTTCAGGCATGGCTCTTGCCCATTATGTAGAAGGGATCTCTAA
Protein sequence (LotjaGi2g1v0378100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQIDVIGSLLSGRLVRERIGPAMLSAVQSQMGAVETGFDEVQNIFDTGCGGAKGLSGDSVEKIPKIKITTDNNADASGER VSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 128 | 127 | 2.9E-68 | – | |
| PANTHER | 2 | 128 | 127 | 2.9E-68 | – | |
| Gene3D | 44 | 128 | 85 | 1.7E-22 | ||
| SUPERFAMILY | 82 | 128 | 47 | 8.84E-21 | – | |
| Pfam | 82 | 125 | 44 | 8.6E-12 | ||
| CDD | 83 | 125 | 43 | 6.89595E-18 | – | |
| ProSiteProfiles | 83 | 125 | 43 | 11.958 | ||
| SMART | 83 | 124 | 42 | 2.6E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0378100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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