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LotjaGi2g1v0388100.10

Overview

Field Value
Gene ID LotjaGi2g1v0388100
Transcript ID LotjaGi2g1v0388100.10
Related isoforms 9
Lotus japonicus genome version Gifu v1.2
Description Isoflavone reductase; TAIR: AT1G75280.1 NmrA-like negative transcriptional regulator family protein; Swiss-Prot: sp|E1U332|ALL12_OLEEU Isoflavone reductase-like protein; TrEMBL-Plants: tr|I3T4J4|I3T4J4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0388100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:88460668..88462358) extracted from Lotus japonicus Gifu genome v1.2.

GCAATGGCAGAGAAGAGCAAGATCCTAGTCCTTGGAGGAACAGGTTACATTGGAAAATTCATAGTTGAGGCAAGTGTAAA AGAAGGGCACCCCACGTTTGCTTTGGTTAGGGAGAGCACGGTCTCTCATCCTGACAAGTCAAAGCTTATTGAATCCTTCA AGAGCCAAGGAGTTACCCTGCTTTATGTTAGTGTCTTTCAATCACAGTTTCTTTTACACACAACTACCATTTCTAAGTCC AAATTCAAATAAACTATTCTGATTTCTGACATGATTATTTCTCTGAATCTGATGTTGTAGGGTGATCTTACTGATCATGA AAGCCTTGTTAAGGCAATCAAGCAAGTTGATGTTGTGATCTCCACTGTAGGTGGACCACAGATTGATGACCAGCTGAAGC TTATAGCAGCAATCAAAGAAGCTGGAAACATCAAGGTGCACAAGTCTTCTTCTACAAAATAATAATTAAGTTTATATGCG TGTTTGGATGAACGTTGTTACAATCAATCAGTTATGGATAGAGTAGATTTTGGTAAAGTGTAGTGTGATTGAATTGATTT ATGTTTAGAGTTTAGATACATTTATAAGAAAAATATTTTCGGAAAATAATGTTGGGGAATCCAATTGTGAAATTTCATGA TTGGTCATATCCACAACAAAATGGTGTTTAACTCTCATTTCATCACTGATCACTCATCAGAGGTTCCTCCCATCTGAATT TGGGCTGGACGTTGACCGTCATCATGCAGTTGAGCCTGTGGTTAGCTTTTTTGAGCAAAAAGTGAAAATCCGGAGGGCAG TTGAAGCTGCAGGAATTCCTTATACTTATGTCTCTTCTAATGCCTTTGCTGGATTTTTTTTGCCTACACTGTGGCAACAA AATGTCACAGCCCCTCCACGCGACATGGTAGTCATTCTTGGAGATGGAGATGTCAAAGGTAAATACATGAAAGCTTTCAC AAATGAGTCTATCCAATTAGATGCCGATGAGAGAGTACTTAATTTAGGGTTTATGGTTTAGGAAATTTTGACCTAAATAA ATATTGGAATTTATCTAGTGCATTTCTAGTAAAGAAACTTGAATAAGTGCTCTTTAGTCCGTATAGTTTTTCTACAAGTC ATAAAAAGTTGAGTTGTGGTTAAATTGGCATGCATGATTGTTTCAGGAGTTTATGTGAAGGAGGAAGATGTTGGGACTTA CACCATCAAAGCTGTGGATGATCCAAGAACATTGAACAAAATCCTGTACCTGAGACCCCCTGCCAATGTTTTGTCTTTCA ATGAGCTTGTCTCATTGTGGGAGAACAAGATTAAGAGTACCATTGACAAAACTTATGTCCCAGAGGATCAACTTCTTAAG AGTATTCAGGGTCAGTATGAATGAATGCACTACTCATAAGACTTTGCTACTGCCACCAATTTCAACTTTCTTTAGTCTCC ATTTACAATACAACTTGTTTATCATTCACAATTTGATGTAACTCTCATATTCATAATGCGAATGTTTTTTCATTTATATT GCAGAGTCTCCTTTCCCTGCCAACTTGGAGTTGGCATTAGGCCACTCAATGTTGGTAAAGGGTGATGCTACAAACTTTGT GATTGATTCTTCTTTCGGTGAGGAAGCTTCTGAACTTTATCCTGACGTGAAATACACCAGTGTTGGCGACTATTTGAATC AATTCATCTGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0388100.10) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGAGAAGAGCAAGATCCTAGTCCTTGGAGGAACAGGTTACATTGGAAAATTCATAGTTGAGGCAAGTGTAAAAGA AGGGCACCCCACGTTTGCTTTGGTTAGGGAGAGCACGGTCTCTCATCCTGACAAGTCAAAGCTTATTGAATCCTTCAAGA GCCAAGGAGTTACCCTGCTTTATGGTGATCTTACTGATCATGAAAGCCTTGTTAAGGCAATCAAGCAAGTTGATGTTGTG ATCTCCACTGTAGGTGGACCACAGATTGATGACCAGCTGAAGCTTATAGCAGCAATCAAAGAAGCTGGAAACATCAAGAG GTTCCTCCCATCTGAATTTGGGCTGGACGTTGACCGTCATCATGCAGTTGAGCCTGTGGTTAGCTTTTTTGAGCAAAAAG TGAAAATCCGGAGGGCAGTTGAAGCTGCAGGAATTCCTTATACTTATGTCTCTTCTAATGCCTTTGCTGGATTTTTTTTG CCTACACTGTGGCAACAAAATGTCACAGCCCCTCCACGCGACATGGTAGTCATTCTTGGAGATGGAGATGTCAAAGGAGT TTATGTGAAGGAGGAAGATGTTGGGACTTACACCATCAAAGCTGTGGATGATCCAAGAACATTGAACAAAATCCTGTACC TGAGACCCCCTGCCAATGTTTTGTCTTTCAATGAGCTTGTCTCATTGTGGGAGAACAAGATTAAGAGTACCATTGACAAA ACTTATGTCCCAGAGGATCAACTTCTTAAGAGTATTCAGGAGTCTCCTTTCCCTGCCAACTTGGAGTTGGCATTAGGCCA CTCAATGTTGGTAAAGGGTGATGCTACAAACTTTGTGATTGATTCTTCTTTCGGTGAGGAAGCTTCTGAACTTTATCCTG ACGTGAAATACACCAGTGTTGGCGACTATTTGAATCAATTCATCTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0388100.10) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEKSKILVLGGTGYIGKFIVEASVKEGHPTFALVRESTVSHPDKSKLIESFKSQGVTLLYGDLTDHESLVKAIKQVDVV ISTVGGPQIDDQLKLIAAIKEAGNIKRFLPSEFGLDVDRHHAVEPVVSFFEQKVKIRRAVEAAGIPYTYVSSNAFAGFFL PTLWQQNVTAPPRDMVVILGDGDVKGVYVKEEDVGTYTIKAVDDPRTLNKILYLRPPANVLSFNELVSLWENKIKSTIDK TYVPEDQLLKSIQESPFPANLELALGHSMLVKGDATNFVIDSSFGEEASELYPDVKYTSVGDYLNQFI
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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43349
2 308 307 3.3E-161 –
PANTHER
PTHR43349:SF41
2 308 307 3.3E-161 –
SUPERFAMILY
SSF51735
4 276 273 1.42E-65
IPR036291
CDD
cd05259
6 300 295 1.26207E-84 –
Gene3D
G3DSA:3.40.50.720
6 294 289 1.7E-126 –
Pfam
PF05368
7 238 232 2.9E-82
IPR008030
Gene3D
G3DSA:3.90.25.10
154 300 147 1.7E-126 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0388100.10, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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