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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0393900 |
| Transcript ID | LotjaGi2g1v0393900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2, putative; TAIR: AT4G36800.1 RUB1 conjugating enzyme 1; Swiss-Prot: sp|Q9SDY5|RCE1_ARATH NEDD8-conjugating enzyme Ubc12; TrEMBL-Plants: tr|I3SJX4|I3SJX4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0393900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89148703..89152182) extracted from Lotus japonicus Gifu genome v1.2.
TTCTTATGTGATTTTTGTAGGAACATGATCAAACTTTTCAAAGTTAAGGAAAAGCAGAGAGAACAGGCTGAAAATGCAAG TGGTGGACCACCTGTTAAGAAGCAAAGTGCTGGCGAGTTGCGTCTTCATAAAGGTTTCCTTCTTACTGAAACTTTTTTGT ATGTTTTTTCATGCTGAATTTGTATGCAATTCGTAAAGGTGTGGTGCTAATATGTTTGCTTGATCAGTCGTCCGAGCGAG GCTCTGAACCGGATTAAAAAACGTATTAAAGGTGCTTGTATACCTTGTAGTTGCTAGAGCAGTAGTTTGCAGGGCTTGGC TCCATCTAGATGGAGAGGGCGGGCGGGGATAAGGTTGAAAGCCAGGGAAAGATAACATGAATATCTTAATTGTTATGTTT GATTCCGGAAGATACGGTTTTATGGTTTACCTTTTAGATTACTATAGATTCTTAGTTATTATAGAATGAAAAATTAAAAA GGAAAAGCATGATCTACCGAAGCTATAACCGGAAGTCATTTATTTTAGTTTCTGGTCTCAAAAGAACTGTAGCTAAGTTT GGTAGGGCATGGGCACGGCAGCACACTTTTCATTTTGTAATGGGACAAAGCTTAGAAGCAGCTCCATGTCTCCTGTGGGT ACTGTTAGCCATAGTAGTCAATCACGGAAAATCGCGCCGCTATAGCGTCGTCGTGTCGTGGCCGTCCCCGCGATTCTGAA ACTTTCTGCGGCGCGATTCGCGGCCAAAATCTCAGAGAATCTCAGCAGATCGCGGCGCTAGAGAAAGAAGATAAGTGGAA CTTGATGAAAAACCCAAATTGCCCTCGAAATTTAAAACTAGGTTAAACTTTGAGGGTACTTTTGGCATTTCGCTTTGGAA TAAGTGAAACGTGCGTTTCATCTTGCTTCACATCTTCATCTTGCGTCTGAGTCGACCAGAACCCATGGTCACCATGCAAC CTTCTTCAGCCACCGTTTACCCCCATGGCCACGGCGTGACCTGCGAAGAGCACCGTCCAGCTTCCGGCGAACCCTTTGCA GCCCCAGGAGTTTTGTTTTCTAAAGTCTCCCGGCCCAGTTTCTGTTTCTTCTATTTATATCTTTTCTGATTCTTATTTAT TCCTTTTTCTTTTTACTTTGTTGCTTTTATAGAGTATTCATTCACCCCCTTTTTTTTTCACTCATCAGACATGAATTCTG AATTTGTGATTAATTTGTAGCATTAATTTTTATGATATAAAATATATAGAAATTCAGAATAGCGGCCGTCCCGCTATCCC ACTTTTGGGGTCGGCCGCTACGCGCCGCTATCCGGGATTGACTGCTATGCTGTTAGCCTGGCAAAATATAATACATGTGT AGTAACTTCCACATCATTACTGTCAAGTTTATGTTTACATGGTAAACAATTCAATTGCAATGGTTATATGAGCCCCTTGG GCGCAACCTGACGCAACAGTGGAGCAGAGGGTGTTCCGTGTTCGGCCTAGACGCACTATGGAGAGAAGTGCTGCAGCCAT GCTGTTCCATAGGTGGTGAACTAGGCTGAGATTGTTCGGGGCTTGGTCGCATAGTGGTGTTGTTGAGAGCTATCAGATAT GTGAGTTACTATTGTACAGAACTCAAGTGGAACAAAATTGAAGCAGGTGGTGGTTGTGGCGGCAGAACCACCACGGTGTA GTGAACAGTGGTGCTATGGGGTGTGGTGCGTTGGATGACAAAGCGTGATCATAAGATAGTGAGATACAGTGGAATGGGAC CCATGTGCGAACAGCAATGGAAAATTGTAGCGACAGGAGATTTAATTGAGTTAGTGAGCGAGTGAATGACTGATGTGAAA ATGATAATCCAAGTGTTGTATTTTGATTTGGTACCAGTACTAACAGGACCTATATAGCTTTTCATAAGTTCTGTCCTTTG TGAATGCTAAGCTGTTTTGCAAGCTTTTATGTGTTTCTGGTTCAGGGAGTGAGTTAGAATTTACATTCTTACCTACTACT ATTTGCCAATAATATTTTTTTTTTCTTTGACTATAGTATCAAGTGGGGAAACATTATAGCACATGTGGATGTAACTTGTT TTATTCTTCTTGGTCAAGCCCCAAAAAGAAATGAGGTGGAGAAGAGAAGAGAGTATAAAGCCTTGACTTGATATTTCTGT GGTTAAAACCAGTGTTCTGAATCCCGGATAGTGGCGGGTAGCGACTGATCACAAAAACATTATAGCGGTTTAGTGCATAG CATGATGTTGAGGCTCCTGGGTAGGTCATTGGAAAGACGTTTGAGGTTGGTCGGAGGTTACAGGTTGCTGGATGGCGTGG TAGGCCGTGATGGATGGTTCAGATCTTTTAAAGGTTGAAGATGCATAATGTTAGATAAATATCTACATGCTCTCCTGACT TGCTGTCTTCTATCCTGTAGAGAGTATAAAGTTCACTAGTTCAACTATGATATGACTTGTCAAGCTGTAGTGTTATAGTT GCTGATCTGAGACATTTATTGTTTCAACCTTTGCTTGAGCCTGTAGTTTTTTGCCATTTTATTTTGTTTTACAAGTTTTT GTCTCAGTGGAACTTTTAATCTTTCAGATATAAGTGAGCTGAATCTACCAAAATCCTGTACCATAACATTCCCCAATGGC AAAGATGACCTGATGAACTTTGAAGTTTCAATTCGACCAGATGATGGATTTTACTTGTAAGGAAGCATACATGTTATCTG CATTTTACTTTCAACTTATTGATCTATCTTTACTACTGACTCTTGTTGAAGGCTTGATGTATGTTGGCTTCGTCTTATGT TTATTTATTTGTTTGTTTTGTTTATATTTTTTTAAACACTTAGTAAATTTATAATCTGGTAGGATCTAAAATCTATACCC ATACCCCAAAATGAAGAAAAAACTCACTAGTCTCCACTATGGTTTGCTTGTTATTACAGAGGTGGCACATTTTTGTTCAC ATTCCAAGTGTCTCCCATCTATCCCCATGAAGCACCGAAGGTGAAGTGCAAGACAAAGGTAGGATTGACTTGATTATCTG TTTTACCTCAATTCATGCTCCATTTATGTAGAGAGATCAGGTTTAACTTTAATTTTGGGTATACGTGTTGTTTTCCTATT CTCTTAATGAACTTATTTTATGCAGGTCTACCATCCTAATATTGATTTGGAGGGAAATGTTTGTTTGAACATCTTACGAG AAGACTGGAAGCCTGTCCTTAATATAAACACTGTCATCTATGGCTTGTATCATCTCTTTACGGTATGGTTTTTGATTTTT TGATTTTTCCCTTTTGGTTATCCTTGATTTTTTTTTGAATCTAACCCTCTTATTGTGTGCAGGAACCAAATTCTGAGGAT CCTCTGAATCATGAAGCCGCAACTGTGCTGAGAGAGAACCCAAAGTTGTTCGAATCTAATGTGAGGAGGGCAATGGCTGG TGGGTACGTGGGACAAACCTTTTTCCCACGCTGTATGTAA
CDS sequence (LotjaGi2g1v0393900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAAACTTTTCAAAGTTAAGGAAAAGCAGAGAGAACAGGCTGAAAATGCAAGTGGTGGACCACCTGTTAAGAAGCA AAGTGCTGGCGAGTTGCGTCTTCATAAAGATATAAGTGAGCTGAATCTACCAAAATCCTGTACCATAACATTCCCCAATG GCAAAGATGACCTGATGAACTTTGAAGTTTCAATTCGACCAGATGATGGATTTTACTTAGGTGGCACATTTTTGTTCACA TTCCAAGTGTCTCCCATCTATCCCCATGAAGCACCGAAGGTGAAGTGCAAGACAAAGGTCTACCATCCTAATATTGATTT GGAGGGAAATGTTTGTTTGAACATCTTACGAGAAGACTGGAAGCCTGTCCTTAATATAAACACTGTCATCTATGGCTTGT ATCATCTCTTTACGGAACCAAATTCTGAGGATCCTCTGAATCATGAAGCCGCAACTGTGCTGAGAGAGAACCCAAAGTTG TTCGAATCTAATGTGAGGAGGGCAATGGCTGGTGGGTACGTGGGACAAACCTTTTTCCCACGCTGTATGTAA
Protein sequence (LotjaGi2g1v0393900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIKLFKVKEKQREQAENASGGPPVKKQSAGELRLHKDISELNLPKSCTITFPNGKDDLMNFEVSIRPDDGFYLGGTFLFT FQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNSEDPLNHEAATVLRENPKL FESNVRRAMAGGYVGQTFFPRCM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 181 | 172 | 2.3E-92 | – | |
| PANTHER | 10 | 181 | 172 | 2.3E-92 | – | |
| MobiDBLite | 10 | 29 | 20 | - | – | |
| SUPERFAMILY | 18 | 181 | 164 | 2.68E-49 | ||
| Gene3D | 24 | 183 | 160 | 8.9E-58 | ||
| SMART | 32 | 174 | 143 | 7.8E-33 | – | |
| ProSiteProfiles | 32 | 163 | 132 | 28.6 | ||
| Pfam | 33 | 168 | 136 | 4.7E-38 | ||
| CDD | 33 | 167 | 135 | 4.43601E-40 | ||
| ProSitePatterns | 101 | 116 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0393900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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