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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0395700 |
| Transcript ID | LotjaGi2g1v0395700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein S8e/ribosomal biogenesis NSA2; TAIR: AT5G06360.1 Ribosomal protein S8e family protein; Swiss-Prot: sp|Q54GN8|NSA2_DICDI Ribosome biogenesis protein NSA2 homolog; TrEMBL-Plants: tr|I3SG84|I3SG84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0395700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89314516..89316501) extracted from Lotus japonicus Gifu genome v1.2.
CAGCCGCAAGGGGATTACATAGAACGCCATAGAAGAGACTATGGCTACCGTCCTGATCACTTCGAGCGCAAGCGCAAGAA GGATGCTCGTGAAGTTCACAAGCGTTCACAAATTGCGCAGAAGGTTTCACTAATTTCAATTGTTTTCATTTAAACTTGCT ATGCAGTTAGTTGTATTTTCATAATTCTAATTGAATTCTTGTTTTATTTTGATTTAACAGGCTATTGGTATTAAGGGCAA GATGATTGCTAAGAAAAATTATGCTGAAAAGGCACAGATGAAAAGAACGTCAGTTTTGTTTATCTTTCTTTATTTTGTTA TTTTTAACTTAACTTCTATGTAATGTGTTGATGCAGAAGCAGTAATTTTAATTTTACTGTTCATGTATTGTGTATGTGTT TATGCCAAAAACATTTGTGGTTGATTCCTTAAATATGGATTATTTTTCAATTTCATGTTTAATATGGAGTTGTTGTATGG TGTTGAATAATTAGCATATTTAGTTTTTCGTCGGGATAGATTTGTTCGTAGGCTGTTTTTATTGATGAGAAAATGATTTA ACTTTTGCCGTTTGGCGTTTCAACAGTATTGCCATGCATGAAGAATCAACGTCCAGGCGAAAGGCTGATGATAATGTTCA AGAGGGAGCTATTCCTGCATATCTTATGGATCGTGAGAACACAGCCAGGGCAAAGGTATGTGATATGTCACACAGGAGGT GTTGAAACACAGTTTTGACTTCAGATCCCTTTGTTATCTTTTCTTGGAAGTAATATAATTTCTATGTTTAGATTATTAGC AACACCATTAAGCAAAAGAGGAAGGAGAAGGCTGGGAGATGGGATGTTCCCCTACCTAAGGTGAGATTGCATTCTGTACT TTTGATTAGATAACGCTTGATGATATCTCTTGAGTATTAGCGTGAATGTGTGATTTCTCATTTCTGCAGGTACGTCCTGT GGCTGAAGATGAAATGTTCAAAGTGGTCCGCACTGGTAAAAGAAAGAGTAAGTTTTACATTTATTACTTCTGGTCTTGTG ATCGTTATTGGATCCACATGATTAAAATGGTATGAATATGTTATTTTTCAAGTACTAATAACATTACGTGGTGGTCATAT CTTCATCTTTATGCATTCACTCTTGTTTAGTTCCCTCCTCTTAGCTTGTTTATGCACGAAGCCAAAAAATCTCTATTTCT TTGCTTGAATAGGTTGAGCTTGTTTGTGATGTTGTTTTTCCAATCATGATCTTGACATCTTGTGATTTTATTATATATGA TTGGAGAGATTTTTTTTTTCTAATGGTGTTCTACTGTCTTTGATCTGTAGTCTCTTAGTTCATTAAAGGGTATTATTTTT TAAATGACTTTAAAGGGTATTATAGAGAATGCATAATTGATCATTTCAGCAACACATCTGATAGTATTTGGCTCACCATT TTGCAGCCAAGCAATGGAAGAGAATGGTTACCAAAGCTACATTTGTTGGGCCTGGTTTTACTAGAAAACCTCCAAAGTAT GAGCGGTTCATTCGTCCTACTGGACTGCGATTCACCAAAGCTCATGTCACTCATCCAGAACTTAAATGCACATTCAATCT AGAAATAATTGGAGTGAAGAAAAACCCTAATGGCCCTATGTACACCTCTCTTGGTGTCATGACCAAGGGAACTATTATTG AGGTGTTTATCTTTCCTGCTCTTTTAATTGAGGGTTATTTTCATTGACACAATCTAAAGCATTTAAGTTGATGCTGACTC TTCCTGTAATTTTAGGTGAATTGCAGTGAACTTGGTCTGGTCACTCCTGCAGGAAAAGTTGTGTGGGGTAAGATTTTGTT ACTTGTATTTTGGCTGTCATGATTGATTGAATTTTTAATGGGAACTGATGCATTGGATTTTATTTGCCATGGATGCAGGT AAGTATGCTCAGGTTACCAATAACCCAGAAAATGATGGTTGTATAAATGCTGTCTTGCTTGTTTAA
CDS sequence (LotjaGi2g1v0395700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGCTAAGAAAAATTATGCTGAAAAGGCACAGATGAAAAGAACTATTGCCATGCATGAAGAATCAACGTCCAGGCG AAAGGCTGATGATAATGTTCAAGAGGGAGCTATTCCTGCATATCTTATGGATCGTGAGAACACAGCCAGGGCAAAGATTA TTAGCAACACCATTAAGCAAAAGAGGAAGGAGAAGGCTGGGAGATGGGATGTTCCCCTACCTAAGGTACGTCCTGTGGCT GAAGATGAAATGTTCAAAGTGGTCCGCACTGGTAAAAGAAAGACCAAGCAATGGAAGAGAATGGTTACCAAAGCTACATT TGTTGGGCCTGGTTTTACTAGAAAACCTCCAAAGTATGAGCGGTTCATTCGTCCTACTGGACTGCGATTCACCAAAGCTC ATGTCACTCATCCAGAACTTAAATGCACATTCAATCTAGAAATAATTGGAGTGAAGAAAAACCCTAATGGCCCTATGTAC ACCTCTCTTGGTGTCATGACCAAGGGAACTATTATTGAGGTGAATTGCAGTGAACTTGGTCTGGTCACTCCTGCAGGAAA AGTTGTGTGGGGTAAGTATGCTCAGGTTACCAATAACCCAGAAAATGATGGTTGTATAAATGCTGTCTTGCTTGTTTAA
Protein sequence (LotjaGi2g1v0395700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIAKKNYAEKAQMKRTIAMHEESTSRRKADDNVQEGAIPAYLMDRENTARAKIISNTIKQKRKEKAGRWDVPLPKVRPVA EDEMFKVVRTGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMY TSLGVMTKGTIIEVNCSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 212 | 212 | 4.2E-127 | – | |
| PANTHER | 1 | 212 | 212 | 4.2E-127 | ||
| CDD | 1 | 212 | 212 | 1.22423E-160 | ||
| Pfam | 23 | 211 | 189 | 4.6E-44 | ||
| Gene3D | 131 | 212 | 82 | 3.8E-10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0395700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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