Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0395700 |
Transcript ID | LotjaGi2g1v0395700.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ribosomal protein S8e/ribosomal biogenesis NSA2; TAIR: AT5G06360.1 Ribosomal protein S8e family protein; Swiss-Prot: sp|Q54GN8|NSA2_DICDI Ribosome biogenesis protein NSA2 homolog; TrEMBL-Plants: tr|I3SG84|I3SG84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0395700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89314516..89316606) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTCGTTCTTCAACTTCATTCTCCACTTATCAGTCACACTCGTTCAGTTCAAGATTTCTCAATTTCGCATGCGTTTT TTTCTGACTGTGTTTATGTAAATCGCAGCCGCAAGGGGATTACATAGAACGCCATAGAAGAGACTATGGCTACCGTCCTG ATCACTTCGAGCGCAAGCGCAAGAAGGATGCTCGTGAAGTTCACAAGCGTTCACAAATTGCGCAGAAGGTTTCACTAATT TCAATTGTTTTCATTTAAACTTGCTATGCAGTTAGTTGTATTTTCATAATTCTAATTGAATTCTTGTTTTATTTTGATTT AACAGGCTATTGGTATTAAGGGCAAGATGATTGCTAAGAAAAATTATGCTGAAAAGGCACAGATGAAAAGAACGTCAGTT TTGTTTATCTTTCTTTATTTTGTTATTTTTAACTTAACTTCTATGTAATGTGTTGATGCAGAAGCAGTAATTTTAATTTT ACTGTTCATGTATTGTGTATGTGTTTATGCCAAAAACATTTGTGGTTGATTCCTTAAATATGGATTATTTTTCAATTTCA TGTTTAATATGGAGTTGTTGTATGGTGTTGAATAATTAGCATATTTAGTTTTTCGTCGGGATAGATTTGTTCGTAGGCTG TTTTTATTGATGAGAAAATGATTTAACTTTTGCCGTTTGGCGTTTCAACAGTATTGCCATGCATGAAGAATCAACGTCCA GGCGAAAGGCTGATGATAATGTTCAAGAGGGAGCTATTCCTGCATATCTTATGGATCGTGAGAACACAGCCAGGGCAAAG GTATGTGATATGTCACACAGGAGGTGTTGAAACACAGTTTTGACTTCAGATCCCTTTGTTATCTTTTCTTGGAAGTAATA TAATTTCTATGTTTAGATTATTAGCAACACCATTAAGCAAAAGAGGAAGGAGAAGGCTGGGAGATGGGATGTTCCCCTAC CTAAGGTGAGATTGCATTCTGTACTTTTGATTAGATAACGCTTGATGATATCTCTTGAGTATTAGCGTGAATGTGTGATT TCTCATTTCTGCAGGTACGTCCTGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGCACTGGTAAAAGAAAGAGTAAGTTT TACATTTATTACTTCTGGTCTTGTGATCGTTATTGGATCCACATGATTAAAATGGTATGAATATGTTATTTTTCAAGTAC TAATAACATTACGTGGTGGTCATATCTTCATCTTTATGCATTCACTCTTGTTTAGTTCCCTCCTCTTAGCTTGTTTATGC ACGAAGCCAAAAAATCTCTATTTCTTTGCTTGAATAGGTTGAGCTTGTTTGTGATGTTGTTTTTCCAATCATGATCTTGA CATCTTGTGATTTTATTATATATGATTGGAGAGATTTTTTTTTTCTAATGGTGTTCTACTGTCTTTGATCTGTAGTCTCT TAGTTCATTAAAGGGTATTATTTTTTAAATGACTTTAAAGGGTATTATAGAGAATGCATAATTGATCATTTCAGCAACAC ATCTGATAGTATTTGGCTCACCATTTTGCAGCCAAGCAATGGAAGAGAATGGTTACCAAAGCTACATTTGTTGGGCCTGG TTTTACTAGAAAACCTCCAAAGTATGAGCGGTTCATTCGTCCTACTGGACTGCGATTCACCAAAGCTCATGTCACTCATC CAGAACTTAAATGCACATTCAATCTAGAAATAATTGGAGTGAAGAAAAACCCTAATGGCCCTATGTACACCTCTCTTGGT GTCATGACCAAGGGAACTATTATTGAGGTGTTTATCTTTCCTGCTCTTTTAATTGAGGGTTATTTTCATTGACACAATCT AAAGCATTTAAGTTGATGCTGACTCTTCCTGTAATTTTAGGTGAATTGCAGTGAACTTGGTCTGGTCACTCCTGCAGGAA AAGTTGTGTGGGGTAAGATTTTGTTACTTGTATTTTGGCTGTCATGATTGATTGAATTTTTAATGGGAACTGATGCATTG GATTTTATTTGCCATGGATGCAGGTAAGTATGCTCAGGTTACCAATAACCCAGAAAATGATGGTTGTATAAATGCTGTCT TGCTTGTTTAA
CDS sequence (LotjaGi2g1v0395700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGCAAGGGGATTACATAGAACGCCATAGAAGAGACTATGGCTACCGTCCTGATCACTTCGAGCGCAAGCGCAAGAA GGATGCTCGTGAAGTTCACAAGCGTTCACAAATTGCGCAGAAGGCTATTGGTATTAAGGGCAAGATGATTGCTAAGAAAA ATTATGCTGAAAAGGCACAGATGAAAAGAACTATTGCCATGCATGAAGAATCAACGTCCAGGCGAAAGGCTGATGATAAT GTTCAAGAGGGAGCTATTCCTGCATATCTTATGGATCGTGAGAACACAGCCAGGGCAAAGATTATTAGCAACACCATTAA GCAAAAGAGGAAGGAGAAGGCTGGGAGATGGGATGTTCCCCTACCTAAGGTACGTCCTGTGGCTGAAGATGAAATGTTCA AAGTGGTCCGCACTGGTAAAAGAAAGACCAAGCAATGGAAGAGAATGGTTACCAAAGCTACATTTGTTGGGCCTGGTTTT ACTAGAAAACCTCCAAAGTATGAGCGGTTCATTCGTCCTACTGGACTGCGATTCACCAAAGCTCATGTCACTCATCCAGA ACTTAAATGCACATTCAATCTAGAAATAATTGGAGTGAAGAAAAACCCTAATGGCCCTATGTACACCTCTCTTGGTGTCA TGACCAAGGGAACTATTATTGAGGTGAATTGCAGTGAACTTGGTCTGGTCACTCCTGCAGGAAAAGTTGTGTGGGGTAAG TATGCTCAGGTTACCAATAACCCAGAAAATGATGGTTGTATAAATGCTGTCTTGCTTGTTTAA
Protein sequence (LotjaGi2g1v0395700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPQGDYIERHRRDYGYRPDHFERKRKKDAREVHKRSQIAQKAIGIKGKMIAKKNYAEKAQMKRTIAMHEESTSRRKADDN VQEGAIPAYLMDRENTARAKIISNTIKQKRKEKAGRWDVPLPKVRPVAEDEMFKVVRTGKRKTKQWKRMVTKATFVGPGF TRKPPKYERFIRPTGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVMTKGTIIEVNCSELGLVTPAGKVVWGK YAQVTNNPENDGCINAVLLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 260 | 260 | 7.5E-150 | – | |
MobiDBLite | 1 | 36 | 36 | - | – | |
PANTHER | 1 | 260 | 260 | 7.5E-150 | ||
CDD | 4 | 260 | 257 | 0.0 | ||
Pfam | 31 | 259 | 229 | 7.0E-47 | ||
Gene3D | 179 | 260 | 82 | 5.8E-10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0395700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…