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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0405700 |
| Transcript ID | LotjaGi2g1v0405700.2 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QNX9|A0A0B2QNX9_GLYSO Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; Found in the gene: LotjaGi2g1v0405700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90235296..90242474) extracted from Lotus japonicus Gifu genome v1.2.
CAAACGTGGCCTTAACAAAAAAAATTGTTAGAGGAAAAATTGAATCCAAACATTAGATTATACGTGGTGCGGTGGCCTCG CCTCACCGTCGACACCGCATTGATTCTCACATGGCTGCTTCACATCAGTAGCAAGGGCGGTTATCGTGCCAGTTCTTCTC TTCCCACCGCTTCTGGCTCTACTCCTCCCTCCTCCGCCATCTCTCTGAACTTCTTTCTCATCGAACACGATGCTGTTTCA TCGGGGACTCTCTCGGATTTCAAGAAATCTCAGAGGCAGCTTGAACGGAACTCGGAGATTGCTTTCCATTCAAGAACAGA ATCACCAGTCCTTGCAATCGCATCATTATCATACACCTACAGGCTCAACTGCAAAGGTATTGTAAATTGTTTGTTTCTTC ATTCACAGCTCTCAATTCAGTTCAGTATATGAATTCATGTTCCGCCAATTCCAGTGAGTTTCACACCGATCTAATGTTTC GTTGTTTATTGCTTACAACACATTTCATTGCTTTCTAGGTTGTATTAATTGGCTTGTTTCCCTTCATGGTTTGGTTTGGA GTATGGACTTAAAAAGTAATGGAACCCTGAAGTAACGTTATCCATGTTTTGTTCTTTTGTTATTTTTAATTATTGAATAA TGATTGCCTTCTGGTCTTGCTTACTCATGGTTTTCCCTTTCTTTTAGTTTTTCTAAATGTTGTGAAGTCTAGGAAAACGA TCTTTGGTATAAAGAATGAATAAAATTGACTCAAACTGAAACTATATTGAGGGTGTGTTTGGGTATACAACTTAATTAAG TGCTTATCGCGTAACCGCTTATTCATAAGCTAATTTGAGAAGCTTAAGCTGAAAGTAGGCTATAGATAAGAATAAGCTTT TATTCATTAGCTAATTTGAACAACTTATGAAAATAAGCTCAAAAAAACAGCTTACAGGTAGGCCATAAGCTATTTACGTA AGTTTCCCAAACACTTTCATAAGCGTTTATGCTATAAGATAAACTCAAATAAATTCTTCCAAACGGGGCCGAGTCCAAGG TGTACATTTTAGATAATTGGAACAAGAAGAAGATAATATGAAGTACAGAACAATGAGTAAGTGGCAAAATATATATTTGG CTAATTGGCTTTGTATTTTTTGGACAAATAGTTGCTTTAAAATCTAACTGGCAGAATGGTCATATAAGAATATGAACCAC AAGCTCTTTATCTTGCATATACCTGCCTCTTTGGTAGATTTAGAGGGGCTGAAATCTCTCTTCATTAATTGGTTAATTGT TGTTTTACTCTGTTTCTGTTTTTACTTTTTAGTTAAGGAAAAGTTAGGAAAAACTTTTTTCTGTTTTAAAATAGAAAAAA AAAAATTAGTCCAAAAAGTTAGTAATCATTAGTATTAATGCTAACCATTATACCACCCCCCTTGAAAAAAGACTTTTGTA ACTAATTCTTTTTTATGTACAAAAAATTAATTTGCTACTCTGATTTCTACCAGTGCATGCTTCTTGTGAGATGCAGGTTA TGAGAAGCTTAGCCTTTTCAAAGGGCCTGCCAGCATTGCATAGTAGTAGATATCAAATCCATGATCAAAGCAGCTCCATT TCTGAAGTTAGTTTCTTTATGTTTGTTTACCTCTTTCTTCTGTATACTGCTCTGAATCCCACTTCTTAGAGGATTTGTTA TTTCTACTTGTTTAAAGCCATATGAAATTTAATTTCCTTTACATTTACACTTCTATAGATGTAGAACAAAATTTAAGAAT ATAATCTGAGTATTCAAACTGAATCATTTATACATTTCTCAATTGTGGTACTCATAAAAAATTCTATGTAACAACTTGGA TGTTTTAGACTACTACAGAGTACAGATATATTCAGTCATTAAAACTATTAAGAATTCAATATTGAAGGTTCTCATGTCCA ATTTTACAAGTTTTCAGTTATTTATTCATTCTTAGTCTTCTATTGAGATACATATACTGTTGTCAGGAAGAACTTGATCC ATTTTCACTGGTTGCTGATGAACTGTCTTTTATTGCCAACAACTTGCGAGCAATGGTAATTGCTGAGGTATGAGACTGTT CTTTATTTTCTTCTAATACATGTATGCTTGGAAGAAGTAAAAAATTTAGGCTTAATTACAGTGTTGAAGTCGGGTCTATT TCATGGTGAAATTTGGGTATATATGGCAGGTTCCTAAGCTTGCCTCAGGTGCTGAATACTTCTTCAAAATGGGAGTGGAA GGAAAAAGATTTCGTCCCACGGTAAGAATATTTCTAATCATAAGCTGTCCTTTAAAATACTCCCCTAATTTTTTCTAGCA TAGCTTAAGGATTCATATAACTTGGTTTGCCTAGTAAAATTTGAGTCCTAATCTGCGCACTTCGGTTTATGCTGATTTTT CTCCTTGCTTATTTAGTTCTAGTTTCTACCCATGCAATTAACTCCCATAGTTTTAGTGGTAAAATGTATAATTTTGAGTG CATCTAATATCTTCAATGCTTTCATGTGCGAGATATGGGTTAATGGATGGTTATTTATGCAGGTTTTATTGTTAATGTCA ACAGCATTAAATCTACCAATACCCAAACCACCTCCTTCTAATGACCTAGGAGGTACTTTTACAGCTGATCTACGCTCAAG ACAGCAACGCATAGCTGAAATAACAGAGATGATTCATGTTAGTTCTTTAGAAAAATTCCTTTTGTTAAGTAAATAATGCT TTCATAATAATGTTGATTATCTTAAGAAGAATAAATACTGATTTATTTTTCTTGTCGGACACTCAATTATACTGTTTCTT ATGTTTATACCTTGGTTACGAATACTTCTTCAAATATCTTAACACATAAAGTGCAGATTCAAATGTGTGAAAGGGGATTC TCAAAATACATGCAATTTTCTTGTTTATACTGTTTCTGCCATCTTCCATGCTTTCGTTTATGAGTTTGCTTTTGTTGTTT CTTTTCTAGCTATGTTGTCAATGACTCTTGTATGTTACTGTTTTCTTGTTTAATTGGTTGTACCGGTTCCTCTTTGTCAT CCTTTCTTGAACATGACCCACCATTATTCAATCTTGGACTTGTTTGGTATCCAGCTATCGATCTATGTGTTCTTTGCCTC ATGATTGAATTATGAAATTATTAAGAAATGTAAGATGTACCGTAAATCAGAACTTACTATGTTCATTAGCTGGTAGTTCG AGTTGGAAGACCGCGCTTGTACTTGTCATAAGACAGAAGAAAGCAGTGAATTGTGTTTATGATCTCCTTCTGATACTTTT TTTATGGCTGTTTTAAGGGAATATCCATTCCTGTCAGGCTTCGAGATTTGACAACTTTGTTGCACTTTCTAACCTCTTCG TCTCGGTGTTTTCAATTTGGTTTTCCTAATACACCACTTTTTTGTTGGTTCCTCTTTTTCCTCTACAAAAATTCATTAAA AGAATTACTTTTTATTAGCTATCCGGTACTGCTGTATTTTGGAGGGTGATTTTACGAAGTAATTCTAAGTTCCTTTGCTG AGTCATAGACATCTTCCTAATTTTTTCCTCCATTCTTGTTATATTATTATCTTATCTTACCAATTATATTAAGATCTGTA AATTTTGTTGGTCCCCAGGACCATCATTTATTAGGTATGGCATGTGAGAACAAAAATGGGAAGATAACTGTGACAATAAA AGCTTGCTTATGAGAAAAAATAACTGCAATCTTATCAAATTCACTGAGCTGCTAGTTCTTGTAGTATAAGATTGTTTTTT GGGCTGATGTAGTATTATTATGCATTATTTAGGCTCCATCAAGTTCACATTGTCTGTGCATGAAATGAATAGCTACCTCC GACCTGTAATAGTGACAAAATCGTTTCAAAGCTCATACATTTGGACCAAGCAACAATGCCACCGCAATATATTTTTGTCC TTTAAATGGTGTAGGAGCATCACTGGGTCTGTTCATTGCTTTACCTTTACTCTCTAAAGATTTCTAAAACTTTGCATTCA AGTAATATATTAACTATCTCTTGCGTTTGTTCCCTTCTATAAGTTGATGAATTTAAGCATTTTATGAACTTTTCTCTATG AAGGTAGCTGTCTTTTGCCACTATTTTCTGAAAGAACTGGTTGTTTTAAATCATTGTTTAGGTTGAAAGTAGACAAAGTA CCCGGTAATATTGAAACACCTTTTATGGTGCAAAATTTTACTCAGCCTTGTGCTCCTTTCCATCTTTATCCCCTACCAGC GAGAAAATAGGAAAATATTAATTTAATCAAACTAACTGGGTTATAATTTTGCCATAGGTGGCTAGCCTTCTTCACGATGA TGTTTTAGATGATGCAGACACGAGACGTGGTATTGGTTCATTAAACTTTGTAATGGGCAACAAGGTATATATCAACTTGT GTTTGTTTTTCCTGCATTTTTTAAAAATATTTTTGTGATGTTTTTTGTCGTGGATGTAGCTTGCCTGAGGTGGTTGCTTT TTTCTATATTCTTTTGCAGTTGGCAGTGTTAGCTGGAGATTTTTTGCTTTCAAGGGCTTGTGTTGCGCTGGCTTCTTTGA AAAACACTGAGGTAAGGTAAATGTGCGAGATTTTGTATATGTAATATTCTGAAGATGTATCTAGTTTCCTTGATGATGAA ATAATTATGCACCTTGAGCATTTTATTTGCCTAAATACTGCATTTCTATAGGTTGTATCTTTGTTGGCAAAAGTTGTAGA GCATCTTGTAACAGGGGAGACCATGCAAATGAGTACTACATCAGATCAAAGGTGTAGGTATGCTTTGTGTTTGTGTCACA CGTGCATCTATGTTCTATGTACATAAAAATTTATCTTTAGTTTACATAATTTGTATTACTAATTTACTATAAGTGATTGA TGGGTTCTTGATGAAATTCTTTGTTTATTCCGTATCTATATAATTAGTAGTTAATTGCGAAAGTTCATTTAATTTTCTCA AGCACAAAACACATAATTGTAAGAAAGTCTTAAGAATGCGTTGAATCCTTAGAGATATATAGGGTACTTTAAGGTATCTT TGATTTCTAACAAATGTTTATATTTTCAGTATGGAATATTATATGCAAAAGACATACTACAAGACTGCATCATTGATTTC CAATAGTTGCAAGGCAATAGCCATCCTTGCTGGCCAAACAGCTGACGTTGCAATGCTTGCTTTTGACTATGGAAAAAATC TGGTTTGTATTAGATTTTAAGTATAATGAGGCACTTTCGTTGTAAATAATATGCATAAAAACTGTGAATCTTTGCACAAC AAGAATAAATGAAAGTAAGCCTCAAAGACGTATCTTGTTATATACATGCCTGTTTTTGAAATTTTCTGAATGGCATAATT AAATTCCCCCCTCCTTTTTTCCCAGGGATTGGCGTTTCAATTGATAGATGATGTTCTTGACTTCACAGGCACCTCTGCTT CCCTCGGAAAGGGTTCTTTGTCAGACATTCGCCATGTAATTTCATAATTTCTTGTTTTTCGAAATTCCACCAATCTTGAG TTTGACTTTTCTATGTAATTCAAATTATCTGATGAAAGCCTATGAATCCTTGATGGTCAATTTAGTCAAATGCGTGATAC ACTCCTTGCCATGAGAACCATAATTCTTCATCTGAGTAGCTGCATTTCATGAATGCAGTCTCTGCTTATTTTTACATGAT GCATATATGCTTTTTGATGGAAATAATCTTAGGTTTGGATGAAATAACGATCTTTATCGTTAGACATCCATATTGCATTC ATTGGTGAATGGTTTTAGGCCCCACACGATCTTTACTTCTTGTTTAGTTCACCTTTGGCTAGAAATTGACAACCCAAGTA GGGACGTCCATTCTTGGTCTCATCAAATGCAAACATGTGGGGTTTAATGATGTCAAGTAAACCCTTATGCAGTGTTGTAC AACCTTGGATGAAATCATGAAAAGGATAGAAAATAAAATTTCATGTGATAACAGCAACCTGTATGGTTTCTAATTTGGTC CGGCACCAAAACTGATATCTACTGTTATTTTTCCATTGATGTTTATGCTGAAAGCCTTTTTTGGGGTTGATTTCATTTTT TATTTATTTTATTCACATTTTTCTTGGCCTTTATTTTTTTAGGGTGCGAATTTCTATCCTTGCTCAAATTCTTACTTCTA TTCTTGATGTCCTTTAGTTTTGTGGTAGGGTTTTATCTGCAGTCTCATCATCAAACCGTTTTTAATGTAGACAATTAAAT CTAAATTTTCTTGCTTCTCATGACTTGTTTTATGTGTTCCTTTGATAGTGAGTTTGTGATATCTACTGTTGGTCAAAAAA ATTATTGCAGGGAATTGTAACAGCTCCAATATTGTTTGCGATGGAGGAGTTCCCTCAGTTGCGGACAGTTGTTGATGAGG GCTTTGACAACCCGGAAAATGTTGATATTGTAAGTTAATATGTGCTTCGCTGTATGTTTTTTGTCCCACTAAACAATGTT AACACAATTTCCTGTCAACAAAGTAAACCTTACTCAGAAGTTTCTTGTCCCACTAAACAATGTTAACACAATTTCCTGTC AACAAAGTAAACAAGAATAAATGTGAATCTTATCATAGGGGCATCAACATGACCATGGGTGAAAATGTTTATCTATTTCT ATTCTTGGTCAAATTATATGTACTGCTATTTTCGCAACTGTAGGCTCTGGAGTATCTTGGAAAGAGCAGAGGTATTCAAA GGACAAGGGAGCTAGCCATCAAGCATGCTGACCTTGCAGCAGCAGCAATTGATTCTTTACCTGAAAGTGATGATGGGGAA GTAAGATTATCAAGGAGAGCTCTTGTGGATCTTACTCAGAGAGTCATTACAAGAACGAAATGAAAGGCTTAGTAAAAGTA GCAAAAATTGTACTGTTACCATTTTTCAATTTTAGCTGCAGTTGTTCCCCGAAAATGAGGGAAAATAAGTTTTTTGTAGG ATTACTTTCGTTATTCAATTTCTTAATTATTGTTTAGTTTAATTATTTAAACTTGTCAGCACCGGTCTGTATTTGAAAAC CGGGTCATTTTATATTTGAATGGGGTCTCTTGATTATAAAAAATAAAAAATTGACCTTTTGTTTGATATTTTTAATAAAT AGATAAATTTGTATTCATTCCTTTTTGGTACAATAAAATTTTGTTCATTTAGTATTTAC
CDS sequence (LotjaGi2g1v0405700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGTTATGAGAAGCTTAGCCTTTTCAAAGGGCCTGCCAGCATTGCATAGTAGTAGATATCAAATCCATGATCAAAG CAGCTCCATTTCTGAAGAAGAACTTGATCCATTTTCACTGGTTGCTGATGAACTGTCTTTTATTGCCAACAACTTGCGAG CAATGGTAATTGCTGAGGTTCCTAAGCTTGCCTCAGGTGCTGAATACTTCTTCAAAATGGGAGTGGAAGGAAAAAGATTT CGTCCCACGGTTTTATTGTTAATGTCAACAGCATTAAATCTACCAATACCCAAACCACCTCCTTCTAATGACCTAGGAGG TACTTTTACAGCTGATCTACGCTCAAGACAGCAACGCATAGCTGAAATAACAGAGATGATTCATGTGGCTAGCCTTCTTC ACGATGATGTTTTAGATGATGCAGACACGAGACGTGGTATTGGTTCATTAAACTTTGTAATGGGCAACAAGTTGGCAGTG TTAGCTGGAGATTTTTTGCTTTCAAGGGCTTGTGTTGCGCTGGCTTCTTTGAAAAACACTGAGGTTGTATCTTTGTTGGC AAAAGTTGTAGAGCATCTTGTAACAGGGGAGACCATGCAAATGAGTACTACATCAGATCAAAGGTGTAGTATGGAATATT ATATGCAAAAGACATACTACAAGACTGCATCATTGATTTCCAATAGTTGCAAGGCAATAGCCATCCTTGCTGGCCAAACA GCTGACGTTGCAATGCTTGCTTTTGACTATGGAAAAAATCTGGGATTGGCGTTTCAATTGATAGATGATGTTCTTGACTT CACAGGCACCTCTGCTTCCCTCGGAAAGGGTTCTTTGTCAGACATTCGCCATGGAATTGTAACAGCTCCAATATTGTTTG CGATGGAGGAGTTCCCTCAGTTGCGGACAGTTGTTGATGAGGGCTTTGACAACCCGGAAAATGTTGATATTGCTCTGGAG TATCTTGGAAAGAGCAGAGGTATTCAAAGGACAAGGGAGCTAGCCATCAAGCATGCTGACCTTGCAGCAGCAGCAATTGA TTCTTTACCTGAAAGTGATGATGGGGAAGTAAGATTATCAAGGAGAGCTCTTGTGGATCTTACTCAGAGAGTCATTACAA GAACGAAATGA
Protein sequence (LotjaGi2g1v0405700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQVMRSLAFSKGLPALHSSRYQIHDQSSSISEEELDPFSLVADELSFIANNLRAMVIAEVPKLASGAEYFFKMGVEGKRF RPTVLLLMSTALNLPIPKPPPSNDLGGTFTADLRSRQQRIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAV LAGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETMQMSTTSDQRCSMEYYMQKTYYKTASLISNSCKAIAILAGQT ADVAMLAFDYGKNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIVTAPILFAMEEFPQLRTVVDEGFDNPENVDIALE YLGKSRGIQRTRELAIKHADLAAAAIDSLPESDDGEVRLSRRALVDLTQRVITRTK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 28 | 376 | 349 | 1.4E-132 | ||
| PANTHER | 31 | 376 | 346 | 6.4E-197 | – | |
| PANTHER | 31 | 376 | 346 | 6.4E-197 | – | |
| SUPERFAMILY | 34 | 375 | 342 | 5.92E-80 | ||
| CDD | 58 | 374 | 317 | 6.61324E-81 | – | |
| Pfam | 69 | 320 | 252 | 8.4E-68 | ||
| SFLD | 75 | 363 | 289 | 7.2E-37 | – | |
| ProSitePatterns | 132 | 146 | 15 | - | ||
| ProSitePatterns | 254 | 266 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Isoprenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. |
Expression pattern of LotjaGi2g1v0405700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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