Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
IPR000092 is a Polyprenyl synthetase.
<p>This entry includes a group of polyprenyl synthetase enzymes from all cellular organisms. It has been shown [[cite:PUB00002569], [cite:PUB00002344], [cite:PUB00002687], [cite:PUB00004527], [cite:PUB00004795]] that these enzymes share some regions of sequence similarity. From 3D structure analysis, it was revealed that they also share structure and reaction mechanisms, using similar strategies for substrate binding and catalysis [[cite:PUB00010618]].</p> <p>A variety of isoprenoid compounds are synthesised by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyse a 1'4-condensation between 5 carbon isoprene units.</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Isoprenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: prenyl transferase-like isoform 1 [Glycine max] gi|356549586|ref|XP_003543173.1| | 10 | ||
| – | PREDICTED: prenyl transferase-like isoform 1 [Glycine max] gi|356549586|ref|XP_003543173.1| | 14 | ||
| – | PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502152794|ref|XP_004509097.1| | 12 | ||
| – | PREDICTED: geranylgeranyl pyrophosphate synthase, chloroplastic-like [Glycine max] gi|356559416|ref|XP_003547995.1| | 13 | ||
| – | PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502160752|ref|XP_004511880.1| | 12 | ||
| – | PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502160752|ref|XP_004511880.1| | 12 | ||
| – | PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like isoform X2 [Cicer arietinum] gi|502141679|ref|XP_004504589.1| | 12 | ||
| – | PREDICTED: geranylgeranyl pyrophosphate synthase, chloroplastic-like [Glycine max] gi|356559416|ref|XP_003547995.1| | 8 | ||
| – | Farnesyl-diphosphate synthase [Glycyrrhiza uralensis] gi|291585672|gb|ADE18770.1| | 12 | ||
| – | Farnesyl-diphosphate synthase [Glycyrrhiza uralensis] gi|291585672|gb|ADE18770.1| | 13 | ||
| – | Geranylgeranyl pyrophosphate synthase; TAIR: AT4G36810.1 geranylgeranyl pyrophosphate synthase 1; Swiss-Prot: sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic; TrEMBL-Plants: tr|I1LHM6|I1LHM6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0394000 | 13 | ||
| – | Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QNX9|A0A0B2QNX9_GLYSO Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; Found in the gene: LotjaGi2g1v0405700 | 12 | ||
| – | Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QNX9|A0A0B2QNX9_GLYSO Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; Found in the gene: LotjaGi2g1v0405700 | 12 | ||
| – | Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QNX9|A0A0B2QNX9_GLYSO Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; Found in the gene: LotjaGi2g1v0405700 | 12 | ||
| – | Geranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7KPC0|K7KPC0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0405700 | 11 | ||
| – | Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.1 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0R0JT66|A0A0R0JT66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0405700 | 12 | ||
| – | Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.1 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0R0JT66|A0A0R0JT66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0405700 | 12 | ||
| – | Solanesyl diphosphate synthase; TAIR: AT1G78510.1 solanesyl diphosphate synthase 1; Swiss-Prot: sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1; TrEMBL-Plants: tr|A0A0R4J4Y7|A0A0R4J4Y7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0255700 | 13 | ||
| – | Geranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7KPC0|K7KPC0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0099100 | 12 | ||
| – | Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1MVR8|I1MVR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0099100 | 12 | ||
| – | Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1MVR8|I1MVR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0099100 | 12 | ||
| – | Geranylgeranyl pyrophosphate synthase; TAIR: AT4G36810.1 geranylgeranyl pyrophosphate synthase 1; Swiss-Prot: sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic; TrEMBL-Plants: tr|D6Q1T4|D6Q1T4_MEDSA Geranylgeranyl-diphosphate synthase; Found in the gene: LotjaGi4g1v0115200 | 14 | ||
| – | Geranylgeranyl pyrophosphate synthase; TAIR: AT4G38460.1 geranylgeranyl reductase; Swiss-Prot: sp|Q39108|GGR_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic; TrEMBL-Plants: tr|A0A1J7GK08|A0A1J7GK08_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0357300 | 12 | ||
| – | Farnesyl diphosphate synthase; TAIR: AT5G47770.1 farnesyl diphosphate synthase 1; Swiss-Prot: sp|P49351|FPPS1_LUPAL Farnesyl pyrophosphate synthase 1; TrEMBL-Plants: tr|I3SE30|I3SE30_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0281600 | 14 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd00685 | CDD | 1 | 4.17 |