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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR033749
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We have found 23 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.031s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0072399.1
n.a. PREDICTED: prenyl transferase-like isoform 1 [Glycine max] gi|356549586|ref|XP_003543173.1| chr0 26835169 26838462 +
2 domain predictions
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Lj0g3v0072399.2
n.a. PREDICTED: prenyl transferase-like isoform 1 [Glycine max] gi|356549586|ref|XP_003543173.1| chr0 26835169 26839796 +
3 domain predictions
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Lj0g3v0281219.1
n.a. PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502152794|ref|XP_004509097.1| chr0 145788992 145799440 -
3 domain predictions
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Lj2g3v1804130.1
n.a. PREDICTED: geranylgeranyl pyrophosphate synthase, chloroplastic-like [Glycine max] gi|356559416|ref|XP_003547995.1| chr2 27281024 27282484 +
3 domain predictions
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Lj2g3v1925740.1
n.a. PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502160752|ref|XP_004511880.1| chr2 28337861 28344922 +
3 domain predictions
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Lj2g3v1925740.2
n.a. PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502160752|ref|XP_004511880.1| chr2 28337861 28344922 +
3 domain predictions
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Lj4g3v2405400.1
n.a. PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like isoform X2 [Cicer arietinum] gi|502141679|ref|XP_004504589.1| chr4 33408585 33411129 +
2 domain predictions
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Lj6g3v1708410.1
n.a. farnesyl-diphosphate synthase [Glycyrrhiza uralensis] gi|291585672|gb|ADE18770.1| chr6 19346123 19349070 -
3 domain predictions
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Lj6g3v1708410.2
n.a. farnesyl-diphosphate synthase [Glycyrrhiza uralensis] gi|291585672|gb|ADE18770.1| chr6 19346123 19350341 -
3 domain predictions
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LotjaGi2g1v0394000.1
n.a. Geranylgeranyl pyrophosphate synthase; TAIR: AT4G36810.1 geranylgeranyl pyrophosphate synthase 1; Swiss-Prot: sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic; TrEMBL-Plants: tr|I1LHM6|I1LHM6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0394000 LjG1.1_chr2 89163667 89165343 +
3 domain predictions
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LotjaGi2g1v0405700.1
n.a. Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QNX9|A0A0B2QNX9_GLYSO Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; Found in the gene: LotjaGi2g1v0405700 LjG1.1_chr2 90235289 90242524 +
3 domain predictions
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LotjaGi2g1v0405700.2
n.a. Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QNX9|A0A0B2QNX9_GLYSO Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; Found in the gene: LotjaGi2g1v0405700 LjG1.1_chr2 90235296 90242474 +
3 domain predictions
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LotjaGi2g1v0405700.3
n.a. Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2QNX9|A0A0B2QNX9_GLYSO Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; Found in the gene: LotjaGi2g1v0405700 LjG1.1_chr2 90236510 90242158 +
3 domain predictions
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LotjaGi2g1v0405700.4
n.a. Geranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7KPC0|K7KPC0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0405700 LjG1.1_chr2 90236531 90242158 +
3 domain predictions
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LotjaGi2g1v0405700.5
n.a. Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.1 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0R0JT66|A0A0R0JT66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0405700 LjG1.1_chr2 90237185 90242158 +
3 domain predictions
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LotjaGi2g1v0405700.6
n.a. Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.1 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0R0JT66|A0A0R0JT66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0405700 LjG1.1_chr2 90237348 90242158 +
3 domain predictions
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LotjaGi3g1v0255700.1
n.a. Solanesyl diphosphate synthase; TAIR: AT1G78510.1 solanesyl diphosphate synthase 1; Swiss-Prot: sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1; TrEMBL-Plants: tr|A0A0R4J4Y7|A0A0R4J4Y7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0255700 LjG1.1_chr3 43856981 43861981 -
3 domain predictions
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LotjaGi4g1v0099100.1
n.a. Geranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7KPC0|K7KPC0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0099100 LjG1.1_chr4 13454126 13465509 -
3 domain predictions
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LotjaGi4g1v0099100.2
n.a. Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1MVR8|I1MVR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0099100 LjG1.1_chr4 13455398 13459858 -
3 domain predictions
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LotjaGi4g1v0099100.3
n.a. Geranylgeranyl diphosphate synthase; TAIR: AT2G34630.2 geranyl diphosphate synthase 1; Swiss-Prot: sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1MVR8|I1MVR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0099100 LjG1.1_chr4 13455398 13459865 -
3 domain predictions
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LotjaGi4g1v0115200.1
n.a. Geranylgeranyl pyrophosphate synthase; TAIR: AT4G36810.1 geranylgeranyl pyrophosphate synthase 1; Swiss-Prot: sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic; TrEMBL-Plants: tr|D6Q1T4|D6Q1T4_MEDSA Geranylgeranyl-diphosphate synthase; Found in the gene: LotjaGi4g1v0115200 LjG1.1_chr4 16661533 16662642 -
3 domain predictions
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LotjaGi4g1v0357300.1
n.a. Geranylgeranyl pyrophosphate synthase; TAIR: AT4G38460.1 geranylgeranyl reductase; Swiss-Prot: sp|Q39108|GGR_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic; TrEMBL-Plants: tr|A0A1J7GK08|A0A1J7GK08_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0357300 LjG1.1_chr4 73604625 73607153 +
2 domain predictions
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LotjaGi6g1v0281600.1
n.a. Farnesyl diphosphate synthase; TAIR: AT5G47770.1 farnesyl diphosphate synthase 1; Swiss-Prot: sp|P49351|FPPS1_LUPAL Farnesyl pyrophosphate synthase 1; TrEMBL-Plants: tr|I3SE30|I3SE30_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0281600 LjG1.1_chr6 59796033 59800462 -
3 domain predictions
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