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LotjaGi2g1v0430500.2

Overview

Field Value
Gene ID LotjaGi2g1v0430500
Transcript ID LotjaGi2g1v0430500.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Hydroxymethylglutaryl-CoA synthase; TAIR: AT4G11820.2 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase; Swiss-Prot: sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase; TrEMBL-Plants: tr|I1LGI7|I1LGI7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0430500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:92735979..92740802) extracted from Lotus japonicus Gifu genome v1.2.

AAATTTAAGTTACTTTAGCCTCTTTTAATGAAGGTTTTTCATTTTCTTTATATTTGCTTATATGCAGGAAGCTTTGGAGG CTCATGATGGTGCCAGTAAAGGGAAATATACCATTGGACTTGGACAAGATTGCATGTCGTTCTGTACCGATGTAGAAGAT GTCATCTCAATGAGGTATGTACTTTGGTTTTGATTGTCTCTGCTTTTGTATTTTGGTGGTGTGGACTATTTGTTTGAATG CCAGTGGGTTTGGTTTGGTGTTATTCCTGCTTGTAGTTACTATCCCTGCTACTAGTTATCCTTGTCATCTATTGTTTGGA CTATCGTAGTAATACGAGATTTTGTACATTCTGAAGTATGTTTGACAACTTACAAGCTTTACATAATGGTTTGGTGGACC CTCATTAGGGAACATGTAAATTGTTGATCTGGTAAATACAGCCCTGAACAATTTAAAACCATGTCAAGGTGTTTGGATAT TTGCATTATGTACAACAAAAATTGTCACTTTCAGGTTGAAATAAATCTTTCTATCTCCTTGGATCTTTTAGTATCGATAT AGTTCATGTTTGGAAACCAAACTTGTTTCCACATTGAATCAGAATTGATTTGATTGAAGCTGTAGAGGAGAAGCTACTCC TACTAGCTTTTACTGCGAAGAATCAATTTTGAGTGGATGTAAAGCTGGTCAAAAATGCTAGTTGTTGTATTGTTTTGCCT GTCTTATGTAAACTACACGTACAATTTACAACCAGCTTAAAATATATTACACTAAGGTTGCTTCTTTCTGTGGGTTTTAC ATTCAATAGGACTTCAAAGGTGAAGCTTTATCTTCAATCTTATAACCAACCATTTCATAGTTTCATCTCTTGACGATTAA TTATTGCATCTGCAGTTTGACAGTGGTTAATTCCCTTCTTGAGAAGTATGAGATTGATCCGAAACAAATTGGTCGGCTGG AAGTAGGCAGCGAGACTGTAATAGACAAAAGCAAATCCATCAAGACATTCCTGATGCAGATCTTTGAGGTATCCTTCAGT GTCTAACCACTTGGATATTGGATATATGGTTCTCCTTGCTAAAATAGACTAACTTTCCAAATCATCTGATTAAAGTGTAG ATATCTCTTTCAAAAAAAAAAAGTGTAGATATCAATTTAAGTGCCTATTTACTTTATGATTCAACCTTAGTTTCAAGTAT TTAATCCGGGATTGGAAGCTCTGAAGCATTCAATCTTGGGGTTGTCAAACAGAGCAAGCTGCTAAAATGGCTTATACTTA TAGCTAGCTGTTCTCTTTTTGTCCTGATTCCGAAATCAGAACAGATACTGACCAGTGACCATCTTCTTGGAAAGCCATTA AAATTTCACTGTCTTATATATTACAGGAAGTCGTTAATGTTAATAATCGGATTGGGTTGTTCTGTTATATTACAATTTTC CATATCAAGCAATTTATTTCTGCAGCTATCTAACAAAATACTCGTTTATTTGTCTGAAACAAACAGAAATATGGAAACAC TGACATTGAGGGTGTTGATTCCACTAATGCATGCTATGGAGGAACTGCTGCTTTATTCAACTGTGTTAATTGGGTGGAAA GCAATTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGATAGTGCAGTAAGATAATTTCCTAGTCATGCACATTAT CTTTGTAATGGATGATTTGGGGGGGGGGGGTTCAATTTCAAGCATTTGGATTTGATATTTCCTTTCTCAGGTCTATGCTG AAGGACCTGCTCGACCTACTGGAGGAGCTGCTGCAATTGCCATGCTAATAGGTCCTGATGCTCCAATGTCTTTTGAAAGC AAATTGAGGGGAAGTCATATGTCTCATGCTTATGATTTTTACAAACCTAATCTTGCTAGTGAATACCCGGTAAGCTTTTC AGTTCCTTTTAATTTCTGTCTGAACATTTGACTTTTGGAATCATATAATTTGAAAAGTAACTTCCAATTCTTTTACCATG TGATGATCATATAGTCCTTGCAACTTTAATTTGATCTGAACATACTACGAAGGATAGTATTTGTTGTTCTCGTCAGTTCT TTACTTTTAAACATAATCGCCTGCTGATAGCATCTAAGGATGCCAACGACAATAAATTCACATATTTTTCATGTTGTAGG TTGTCGACGGAAAGCTTTCACAAACTTGTTACCTCATGGCTCTTGATACTTGCTATAAGCATTTCAATCACAAGTATGTT TTACTTTAATCTTAATTCTCATGAACATATTTATCTATAACATTGACTAGGGTTATGAAAATTGGGCCAATAATTATGGA AACGGGTTAAAGATAAACTGGTAGAATGATTCAGATCAAATAACCCAATAAACATATGTTCTTACTCAGTACTTCGCTGC CTTGATGCAAATTGAGTTGGACCTGACCTGGCCACTATTGACAATTTCTTTTTCTCAACTAAATTACTCTTAAAATTCTT AAATGATTTGGTAAACTAGTAATCTGATTTGGCTATAATTATGTCTAGACAAGGTGATTATTCTAACATTAGGCTATAGA TATTCTAAATGGGGCATTTACAAATGGGAAAGAGCTTACTGCACTACTAAAGGAATTTAAGCCAAATGAGAAACTGCGCT TGCTGATCTGATAAGCATTCTGCCTGGTAGTAGAAAAGTGCCATTTTAATGAATAAATCTAATAATATAATGATAGAAAA TATGCTTAATGTTATATAGCCAGTGAATGACACCGATGAAAAATTATATGATGTTCTAATTTACTTTTCCTTATTCTGTC ACATTACCTTATCTCCCTATGTATCTTTATATATGGACTTTGATTAGTTGAATCAAAGTTTGTGGATGTTTCGTAAATAA TAATTCAAGCCATATAGCATTACTCATAATAATATTAAATCTCAAAGTAGAATGTAATAGCACATTTTTCAAAAGTATTA TTCAAATTCTCAATATGTATACATCCTTGTTTATCTTTTCATATTTGTATTAAGTAGACCAGTCTTGTATTCAAAACATT AATAATAACTAACTAACCAAGTACCTGAATGTATTTGCTTTTGCAGATATGAGAAACTCCATGGAAAACAATTTTCTATT TCTGATGCTGAATACTTTGTATTTCACTCTCCGTATAACAAGGTAGTTTAGACATATGGATTTAGTATTTAATATCCCAA TTAACACTTAATCATGCTCCGCGTGACATATTCCCCATATATCTGTATCACATTGATATGTCAACCTTTAGTCTGTCCTG TTTTTTTGTATATTACTCTTAACACTTCTAGCTTCTGCAGCTTGTACAGAAAAGTTTTGCTCGGTTGGTGTTCAGTGACT TCTTGAGGAATCCTAGGTCTTCTTCATTTCTCCATCATCTGAAAAACTTGTTTAATTTTTATTCAATTAATACACGGGTG TTCTAAAATTAATTATGACTGCAGCGCTGTGGATGAGGTTGCAAAAGAAAAGCTAGGACCATTTGCAACTTTATCTGATA ACGAGAGCTACCAAAGCCGGGATCTTGAAAAGGTTTGAGAGCCTATAAAAGTAACATTACTGATTATTTGTACTTTTACC TTTGGATAGTTTATAAATTTCACAGTTCAATAAAATTCTATTAAAATTGACAGTTTTGAAACTTTTTGCTGATGATGTGT GATACATCCAGCTGATTGTCAAGTACTTGAACTAGTTAATAAGTTAGTTGGTTAAGTCTGTTAGCCTGTTATCTTTTGTG TCAGTTTTGTATTAACATTTGTTAATTATTTTAGTCAATTCAGATTGCACATGAGTCACAAACTCCATGTACATATAAAC CAATCTTCATTCTCTGCAATACTCTGATTTCTGAGTTCCAATGACACATTTTCTTTTTTTTATTTGTAGGCATCCCAGCA AGTTGCAAAACCTCTATATGATGAGAAGGTACAACCAACTACTTTGATACCAAAACAAGTTGGCAACATGTACACTGCGT CTCTCTATGCAGCCTTTGCATCCCTTATTCATAACAAGCATAGCACATTGGTAAATATTCTGATCACTATCTATGACAAA TATAAGCATCCTCATAACAATGCTTTGTGCTCTCTAATAATTTCATTTTGCAATTTTCAGGCAGGAAAAAGGGTGATATT ATTCTCATATGGAAGTGGCTTAACTTCAACAATGTTTTCTTTGCAATTTAGCGAAGGTCAACATCCATTTAGCTTGTCAA ACATTGCCCGAGTGATGGATGTTGCTGGAAAATTGAAATCAAGACATGAGGTATTGATCTTTAAACGTCTAGTCAAATAT TGAAGTATTTCAGATGTGCTTTTCAGGTTTAATTTTAAATTGAACATAATTACCAAAAAAAATATTAGATCGTATCTCTC TTTGGTATTCAGAATGAACCTGTTTGACATGTATTTGACTCACATCGGTACACCTTGTAATCTCTATAGATTCAGTCCAA GAGACTAATGAAGAACTGATTCATTCTTCTCCAAAATCACTTTTCATCTTCTAATAGGTATACAATTGAAGATTTTGATG AGTACATAATTTTTTGTAATGCAGTTTCCTCCAGAGAAGTTTGTCGAAATCCTGAAGCTAATGGAGCATAGGTATGGTGC CAAGGAGTTTGTGACAAGCAAGGATATTAGCCTTTTATCTCCAGGCACATTCTATCTCACCGAAGTTGATTCCATGTACC GGAGATTCTATGAAGAGAAAACTAAAGAAAGCAGTTTGACTCCTGCAGTCAACGGTTTGACGGTCAATGGTCACTGATTC TTACCAATATACAGCAAGCAATAA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0430500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGGAAGCTTTGGAGGCTCATGATGGTGCCAGTAAAGGGAAATATACCATTGGACTTGGACAAGATTGCATGTCGTT CTGTACCGATGTAGAAGATGTCATCTCAATGAGTTTGACAGTGGTTAATTCCCTTCTTGAGAAGTATGAGATTGATCCGA AACAAATTGGTCGGCTGGAAGTAGGCAGCGAGACTGTAATAGACAAAAGCAAATCCATCAAGACATTCCTGATGCAGATC TTTGAGAAATATGGAAACACTGACATTGAGGGTGTTGATTCCACTAATGCATGCTATGGAGGAACTGCTGCTTTATTCAA CTGTGTTAATTGGGTGGAAAGCAATTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGATAGTGCAGTCTATGCTG AAGGACCTGCTCGACCTACTGGAGGAGCTGCTGCAATTGCCATGCTAATAGGTCCTGATGCTCCAATGTCTTTTGAAAGC AAATTGAGGGGAAGTCATATGTCTCATGCTTATGATTTTTACAAACCTAATCTTGCTAGTGAATACCCGGTTGTCGACGG AAAGCTTTCACAAACTTGTTACCTCATGGCTCTTGATACTTGCTATAAGCATTTCAATCACAAATATGAGAAACTCCATG GAAAACAATTTTCTATTTCTGATGCTGAATACTTTGTATTTCACTCTCCGTATAACAAGCTTGTACAGAAAAGTTTTGCT CGGTTGGTGTTCAGTGACTTCTTGAGGAATCCTAGCGCTGTGGATGAGGTTGCAAAAGAAAAGCTAGGACCATTTGCAAC TTTATCTGATAACGAGAGCTACCAAAGCCGGGATCTTGAAAAGGCATCCCAGCAAGTTGCAAAACCTCTATATGATGAGA AGGTACAACCAACTACTTTGATACCAAAACAAGTTGGCAACATGTACACTGCGTCTCTCTATGCAGCCTTTGCATCCCTT ATTCATAACAAGCATAGCACATTGGCAGGAAAAAGGGTGATATTATTCTCATATGGAAGTGGCTTAACTTCAACAATGTT TTCTTTGCAATTTAGCGAAGGTCAACATCCATTTAGCTTGTCAAACATTGCCCGAGTGATGGATGTTGCTGGAAAATTGA AATCAAGACATGAGTTTCCTCCAGAGAAGTTTGTCGAAATCCTGAAGCTAATGGAGCATAGGTATGGTGCCAAGGAGTTT GTGACAAGCAAGGATATTAGCCTTTTATCTCCAGGCACATTCTATCTCACCGAAGTTGATTCCATGTACCGGAGATTCTA TGAAGAGAAAACTAAAGAAAGCAGTTTGACTCCTGCAGTCAACGGTTTGACGGTCAATGGTCACTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0430500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQEALEAHDGASKGKYTIGLGQDCMSFCTDVEDVISMSLTVVNSLLEKYEIDPKQIGRLEVGSETVIDKSKSIKTFLMQI FEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPMSFES KLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKHFNHKYEKLHGKQFSISDAEYFVFHSPYNKLVQKSFA RLVFSDFLRNPSAVDEVAKEKLGPFATLSDNESYQSRDLEKASQQVAKPLYDEKVQPTTLIPKQVGNMYTASLYAAFASL IHNKHSTLAGKRVILFSYGSGLTSTMFSLQFSEGQHPFSLSNIARVMDVAGKLKSRHEFPPEKFVEILKLMEHRYGAKEF VTSKDISLLSPGTFYLTEVDSMYRRFYEEKTKESSLTPAVNGLTVNGH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.47.10
1 431 431 2.3E-177
IPR016039
CDD
cd00827
2 349 348 1.65376E-77 –
Pfam
PF01154
2 155 154 3.3E-74
IPR013528
TIGRFAM
TIGR01833
2 430 429 6.8E-208
IPR010122
PANTHER
PTHR43323:SF2
2 430 429 7.0E-297 –
PANTHER
PTHR43323
2 430 429 7.0E-297 –
SUPERFAMILY
SSF53901
3 153 151 2.37E-27
IPR016039
ProSitePatterns
PS01226
86 101 16 -
IPR000590
Pfam
PF08540
157 430 274 6.0E-111
IPR013746
SUPERFAMILY
SSF53901
158 428 271 5.42E-66
IPR016039

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004421
Molecular function Hydroxymethylglutaryl-CoA synthase activity Catalysis of the reaction: acetoacetyl-CoA + acetyl-CoA + H(2)O = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA + H(+).
Subterm of
GO:0008299
Biological process Isoprenoid biosynthetic process The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0430500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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