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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0432600 |
| Transcript ID | LotjaGi2g1v0432600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIE subunit beta; TAIR: AT4G20330.1 Transcription initiation factor TFIIE, beta subunit; Swiss-Prot: sp|P79011|T2EB_SCHPO Transcription initiation factor IIE subunit beta; TrEMBL-Plants: tr|I3SF72|I3SF72_LOTJA Transcription initiation factor IIE subunit beta; Found in the gene: LotjaGi2g1v0432600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92949035..92955336) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCTTTGTAGTTGTACCAAAAAAATTGTATAATTTTCGTGCGCATACAAGTTGAAGTTATTGCATACCGATTGGTAAA AGGGGGAAAGCACAGAGCAACTCTTCCAGCTTCTGCCTTGTTCTCTCGGAGGACAGAAATCAGAAATCTGTCACGGTTTA TCTCTTCTCTTCATCTCTCAGTTTCAATTTACTTTCCTCCGATCACATATTCGATTTCGATTGATAATAATACTCCAATT TCTCAATTGTTTGATTGTTTTCCCCAATTCAAAATTCACTCACCCCTCTTTGCTTTGCTAGGTTTTTGTTGAATCGATTC CGAATTCGGATCGAGGAACACGATTTTGATTAATAGTTGTGTGCTTCATTGATTTGGCATCTGAAACTGAAACCTGCGAT TGCGATTGTGTGTTTTGATCTCATCTCAGATGGCGTTGCAAGAAAAGCTTGACAGGTTCAAAAGGCAGCAAGAGAAGTGT CAATCGACCCTCACCAGCATTGCATCTACCAAGGCTTCTGCTACACAAAATGGCCGAAGAACACCGACACCAACACCACC CGCTCCTGTTCCTGTCAAATTCTCCAACGATACTGAGAGACTTCAGCATATTAACAGTATACGTAAAGCCCCCGTTGGAG CTCAGATGAAGCGTGTTATTGCTCTCCTATTTGAGGTACACTTTTAATGTATTCACACATTTGAGCATTTGAGACATTTC GAGCTTATTTAGTTCATTTTGTAGTATATAAGCTTCGATAAGCTCCAATAAGTTCGTATCGTAAACGGGCTCTTAGCAGT AACAGTCATTAGGTTATAATTCATAGTAGCTAAATTTAAGAATCAGATAACTGGTTAGGACTTAGGAGAATTTAATTCAT AGTAACCCTTATACATGATGTATAGTTGTATGAATATATGCTTTTCTGTTAGCCGTATGTAAGCTATTTTGTGGTTAATG AATGATCATTTCGAATGCGGGTTAATGTGCACCTTCTTTTAGCCAATCTCTGCCATCTTTTAAGGTTGATGGATACATTC ATGTTGCCATGGATACTTATTTAGTGTCTTGTGCTTGTCTTTGCTTAACAGTCTCGACAGGCTTTCACAATGGAGCAAAT AAATGAAGCATGCTATGTGGACATGAGAGCTAACAAAGATGTTTTTGACAGTATGAGGAAAAACCCGAAAGTCAAATTTG ATGGGGAGAAATTCTCTTACAAGGTAGCTTTTGTTCATGCATATATGTAAACCTTCATGTGTTCAATTTTGTTCACTTTG ATAATAACAACCTCTTCAATGATACTACTATTTTGGTTATGACATTTGGCATTGCTTTTGGTGTGTATAGTCAAAGCATG ATCTTAGGGACAAAAAAGAGCTGCTCTTTCTGATACGCAAGTTTCCAGAGGGCATTGCTGTTATTGACCTAAAGGATTCT TACCCAACTGTGTTGGAGGACTTGCAGGTAAATTATTTTTATTAGTTAGTTTTGTTTATGAAAATTTCTTGACATTCATT TTTTAATAATGTCAGTGGAATTTTATTGTGGATTTGGCCTTGTTGAGCAACTATTCTTGTCTCAGGTTTTTATTCATTCT CATTGTGTAATGAATTTCTGGGCGAAACATGATTGCCAAAATCACTCATCACCATACTTATGAAAGAAGATAAAATCTTA GAAGATCATTTTATCCCTTTTTCTCAAACTTAGTTATCAAGATTTCATAATAGCTGGTAGTGTGGAAAATAATTTTTTTA AGTTATTACAAAATCTGCACTTTAAGGTGGATACCCTGAATGCTGCTTAATCTTTTGCTGGTACTGTCTCAAATAATGGA TCTGGAATTCTGTGATAACTATGGAAGATAGCTGGCTTTTGAATGTGATTACTGAAGGATTTTGGTTGTGTACCAGATAT TTACCATTTTAGAGTAGCATTCCATTTTGTAGAATAGAACTATCAAAATTTACTTCTTTTGAGTCATTTCTTTTACTCTG CTGATTAGAGTTTTACATGATACATATAAACGTCAACTATTATGGTATGTTGTATTAAACATGCAAAGAAGAATAGAACT ATATGATAAATTTGATCTTAAGCATCTAACTTGCTGTGGTGAGAGATAATGTTTTTGAAGAGGTGAAGAGTTAAAATTTT GTGAAATAATTGGTTTCTCATGTAATAAGACCTTATAATGCTTTCGGTTCCCAGGCTTTGAAAGCTGCAAGGGAGATTTG GCTGCTGTCCAACTTTGATTCCCAGGAAGACATTGCCTACCCTAATGATCCTAAAGTTCCCATTAAGGTGGATGATGACC TAAAACAGCTTTTCCGGGGGATTGAATTGCCTCGTGATATGATTGATATTGAGAGGGATCTCCAAAAAAACGGAATGAAG CCTGCTACTAACACAGCAAAGAGAAGGAGTGCAGCGCAAATGCAAGGCATTTCTTCCAAGCCTAAACCTAAGAAGAAGAA GAATGAAATCACCAAGAGGACCAAGCTGACTAATGCCCATCTTCCAGAGCTTTTTCAGAACTTAAAAGATTCTTGACTTA AGATCCATAGCAACTAAGTCAGTGAATTCCCAAAGATCATTTATTGTCGCAAAATATATCATGTATTCAGATGGATATGT GTTTTTACTGTATGAGCAAACTGCTTCTTGTATTTTATGTACCCAATTAGGCGAGGGGAAATAATATTTAAGAGTGGAAG GCACAATGCAAAGTCAAGGCATTCCTTCTAGTTTCTACAAACAAGATTCTAAAGCAAAAAGGCAAAGGTGTTTGTAACCC ATCTCCTGGTGGGTTTTCTAAACTCATACATATTGTTTAACCAAGGACAGAAAATGGCGGAACAAGTTGGCAAACTTGAT CATTTAGCAGAGTGTGTAAATATTGAGGAGATTCTCATTCATATGTCCTGCTCATGGCAACAATGTTCTATATACTTTTT TAATATGTTAAGGCTGCATAGTTCCTCTTTTGGGGTTTTATGACTCAGCCTTATGGGATGTTGTGATTTATTGCTACTTT CATTATTTCATATACATATATGGTGTAAAATGCATATTACATTCCCTAAAGTTTTACCTATTTACACCTTTAGTGCCAAA TGCCTGTGTTGTGATCATTCAGTTTCATTGGTGTTTGATATTATGTGGTGTCCTCAATTTTGTATTTACGTTCAATTTTT TCCTACTCTCTTAGCTTTGTTGTTTACAGAAATTACAAAATTCATTACCATGGTGTCCGAGAAGCCCAATAGATATACGA TATCTCTCATTTCCTCTCCAAGTTTCAAAAGTTGTGTGCATACAGGTTCCTTTTAACCCTTTAGCCACAGCTTCCCACTA AGTATATTTGCACACTGGCATTGGCCAAAACAAAGGGAAATGGAATTGACGAATTCTTATTTGTGTGAATATCAATCAAG CAAAAAACATATAGCTTAAGAAACAAATGACCAATCCAATGGTTCATTTCAAACATTACATGTAGCAAACACTCTGGAGC ACATTTTAAATGTAAAACCACTTTAATCAGTCCAATGCGTCCTTTATTTAGCTGAGGTTGAAAACACTTAGGCGCTAAAG CATGCAAAAAGCTTCTTTGGCGCGACTCCACGGCTACGGAACTTTGCAGCTGTTTCTTCAACCTCAAGAAACTCTTCCTT TTTATTCGCCTCAACGGTTGCCCTTTTCTCCTCTGCTGCCTGGTGAATTTCAGCTATTTTGTTCTTCATTTTTTCAGCAT ACTCAGCCTTCTTTCTTTCTAAGTTTTCCTGTTAAAACAAATATTTTTTTCAAGTAACCAATGGGTCAAATAACTGTCCG TTAAAAAAATCAGTCACATAGATGCATCAATTAAGCACAAATCGTTCAATGAAAAAATTAAACTAACACAAATAAGATTC AATCTTTTACTAACAACAAATGGTAGCTACTGATACAAAACATGACATCTACACGCAGAAACCCATTTAGTTAATCACCT CAATTTTCTTGAGTTCTGCCTCTATAGAAGCTTTCCTGCTTTCCTCCCACAATCCAACGGCAGATTGCTTCTTGTATGCC CTGCATGGCCGTTTAACTCTCATCAAAATGAATGAACTTACGAAGTAAACGTCAAATATATGAAGTAAAATAGAGTCTTA GAATTGCAAAGCTTTGTATTATGAATGGAACCAAATAACTTCAAACTACAAGTCAAAATGCTGAACCAACATATTCTAAA GTGAAGAGGAGTCTTATGAATTTCCATAATGCTAATCTAGAAGTGTGATTACTTTGGCATACAATGTCACTATTTAGTAG TAGTTGTACAAAATCAGTAGGTCAGTAGGCTAATTCATGAACTGACGAAAGAGTCCTAATCTTAAAATTGGTTAGCAATA AGCAGGGTTATGTTAGATATATCAAAAACTGTTTCATTCTTACATCATATATTAGGGAAGGCCTTAGAACATGAATGATC TAGATAAGAAACTAAGAAAGTCAAGATTTAACAAACTATCAAATGGTCACTTGCCTGTTCTCTGCTTTTGTCTTTTCACT TTCTTCCCATGCTTTAATCAGAGCCAATCTTTTCTCTGTTACAACTCTTGCAAGCGCAGCATCTGTTGAACAATGTGAAA AAAGTTACTTACCTCTTAAACCCTCAATAACTTTATACTAATTTTTTAGAAAATAACCTCTGTCAACTGAGTCCCCTGTA ACTTTTTTAGCATCATCATCAGCAACATCTGTATGAAAACATAATCGGTTGAATGAATACAAGTAACATAAACATCCAAA TTCATCCATAGAAAATCCACTTATGTTGTTTAGAAGGTCAATTTGTGTATCAGTTTTGTGCCAAATGGACAAAGAATCTA CTTGAAGTCTTGAAACAACAGGAAGCCCAACTTAGTGGCTGGATGAATATATTTTGAAGCAGAACATATATTTTTAGTAG CTTCTGAGTTCAGACCCTTTTTTAATTTAAAAAAACTATTAAATAGTATTTCTCTTAAAATAAGTTTTCACAAACATACA CTCTGTTGCTCCATAAAGCAGTTTTATTCACAAAACGCCTAACAAAAAATATTACACTTGCCTCAGCACAAATTCATATC TTGTCAAATCTTTTGAATTTATTATTTACACACTACAACAACTCCAAAACCATATCCAGTAGAACATCCTGAGTTCCTTC CTGTCTAGAATTCAATTAGCTTCTTAAATTCTTAGCAATTTTCTACTTTACTATGCTACCAAAAAGAAATAACGAATCAT GATTCCCTTTAAAGCAATGATTACTTGCCATTCGTTGTGCGACAAACAGTACAAAAGACATCTTGAAATTGATGTCAATG CATAAAGCATTTAGTATATGTCAACCAAAATATGTGCCAAAAAAAAAAAACTCAAACAAGACTAAATTAAAATTGTAGAA GGTAGCAGAAAAGTGACTGAGGAACCTCAACCTCTGTTTTGTGATGGGTGAACATAAGCCATGAAATTTGTTCCAAATAA TAAAAGAACTATATGTAATGAAAACTGATCAGATATGAAAAAAAGTATACGCAGTGCAATCAGTTTAGATATTAATTCTG TGAATGAAATTTATAACACACTTCAAAATCAAACCATAGTTTGATTAAAAACAGAACACAAGTAAGAGATGAAATTATGA ATTATCTAGATCATAACTATGAAGAGTGAGTTTCAGAAAATCATAAGAATCAGGTTTTTTTTGCTTGCTAACAAACAAGA GAGTTTCTGAAATTTACTTTGAACGATTGGAGAAGGAACCTCCTTATGAGGTTCCTCTTGGGTGACAGCTTCTGGTTTCT CTGATTCCTTTTCTTCTACTTGGGGTTCCTGTTCAGAAACAGAGTCCACGAACTCTGTCTGTGATTCGACTTTGTTCAAG TTGGAATCTTCTTCTCCCATGGCTACAAACACAGTGCAAGCAACAACCAACAAACTTGGGTGGCAATTGGGTTCTGATTC TGGTTCTGGCAGGTATTGATGAATTGAATAGGATTGTTTAGTGTTAAGCTTTGAATATATAGCAAACCAGAAAGCAACGA TAGTATCAAGTTTCCCTTGTTGGAAGAATTTGGAAATAACAAGGTGGTGGTGGTGGTGACAGGGTGTCCTTGAGGAACAA CGTTGGGTAAGTGGCGAAGTTTCACGTTAGACTAGAACAATATGTGCGGATATTCACGTCACGCCTTGTTATGTTTATAG TACCTATGGTATGTATGAATCTGCTTATTGAATAAGGAAGAATGACACAAAAGGAAAGAAAC
CDS sequence (LotjaGi2g1v0432600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTGCAAGAAAAGCTTGACAGGTTCAAAAGGCAGCAAGAGAAGTGTCAATCGACCCTCACCAGCATTGCATCTAC CAAGGCTTCTGCTACACAAAATGGCCGAAGAACACCGACACCAACACCACCCGCTCCTGTTCCTGTCAAATTCTCCAACG ATACTGAGAGACTTCAGCATATTAACAGTATACGTAAAGCCCCCGTTGGAGCTCAGATGAAGCGTGTTATTGCTCTCCTA TTTGAGTCTCGACAGGCTTTCACAATGGAGCAAATAAATGAAGCATGCTATGTGGACATGAGAGCTAACAAAGATGTTTT TGACAGTATGAGGAAAAACCCGAAAGTCAAATTTGATGGGGAGAAATTCTCTTACAAGTCAAAGCATGATCTTAGGGACA AAAAAGAGCTGCTCTTTCTGATACGCAAGTTTCCAGAGGGCATTGCTGTTATTGACCTAAAGGATTCTTACCCAACTGTG TTGGAGGACTTGCAGGCTTTGAAAGCTGCAAGGGAGATTTGGCTGCTGTCCAACTTTGATTCCCAGGAAGACATTGCCTA CCCTAATGATCCTAAAGTTCCCATTAAGGTGGATGATGACCTAAAACAGCTTTTCCGGGGGATTGAATTGCCTCGTGATA TGATTGATATTGAGAGGGATCTCCAAAAAAACGGAATGAAGCCTGCTACTAACACAGCAAAGAGAAGGAGTGCAGCGCAA ATGCAAGGCATTTCTTCCAAGCCTAAACCTAAGAAGAAGAAGAATGAAATCACCAAGAGGACCAAGCTGACTAATGCCCA TCTTCCAGAGCTTTTTCAGAACTTAAAAGATTCTTGA
Protein sequence (LotjaGi2g1v0432600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALQEKLDRFKRQQEKCQSTLTSIASTKASATQNGRRTPTPTPPAPVPVKFSNDTERLQHINSIRKAPVGAQMKRVIALL FESRQAFTMEQINEACYVDMRANKDVFDSMRKNPKVKFDGEKFSYKSKHDLRDKKELLFLIRKFPEGIAVIDLKDSYPTV LEDLQALKAAREIWLLSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKRRSAAQ MQGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLKDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 276 | 276 | 3.3E-165 | – | |
| PANTHER | 1 | 276 | 276 | 3.3E-165 | ||
| MobiDBLite | 1 | 46 | 46 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PIRSF | 2 | 277 | 276 | 5.2E-24 | ||
| MobiDBLite | 16 | 38 | 23 | - | – | |
| ProSiteProfiles | 57 | 132 | 76 | 11.263 | ||
| Pfam | 71 | 130 | 60 | 1.1E-7 | ||
| Pfam | 132 | 189 | 58 | 2.8E-14 | ||
| MobiDBLite | 224 | 278 | 55 | - | – | |
| MobiDBLite | 225 | 244 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIE complex | A transcription factor which in humans consists of a complex of two alpha and two beta chains. Recruits TFIIH to the initiation complex and helps activate both RNA polymerase II and TFIIH. | ||
| Biological process | Transcription initiation from RNA polymerase II promoter | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. |
Expression pattern of LotjaGi2g1v0432600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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