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GO:0006367

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Transcription initiation from RNA polymerase II promoter
Full defintion Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
Subterm of

Relationships

The relationship of GO:0006367 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCtxnOH

Associated Lotus transcripts 66

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0019949.1
– Transcription initiation factor TFIID subunit [Medicago truncatula] gi|357462725|ref|XP_003601644.1|
GO terms
2
Lj0g3v0198759.2
– PREDICTED: general transcription factor IIE subunit 1-like [Glycine max] gi|356563109|ref|XP_003549808.1|
GO terms
1
Lj0g3v0198759.3
– PREDICTED: general transcription factor IIE subunit 1-like [Cicer arietinum] gi|502151714|ref|XP_004508577.1|
GO terms
1
Lj0g3v0296239.1
– PREDICTED: transcription initiation factor TFIID subunit 11-like isoform X2 [Cicer arietinum] gi|502174102|ref|XP_004515436.1|
GO terms
2
Lj0g3v0327639.1
– PREDICTED: general transcription factor IIF subunit 2-like [Glycine max] gi|356511855|ref|XP_003524637.1|
GO terms
3
Lj1g3v0180960.1
– Transcription initiation factor IIA subunit [Medicago truncatula] gi|357501375|ref|XP_003620976.1|
GO terms
2
Lj1g3v0180960.2
– PREDICTED: transcription initiation factor IIA subunit 2-like [Cucumis sativus] gi|449441770|ref|XP_004138655.1|
GO terms
2
Lj1g3v2140840.1
– PREDICTED: transcription initiation factor IIF subunit beta-like [Glycine max] gi|356518378|ref|XP_003527856.1|
GO terms
3
Lj1g3v2534840.1
– PREDICTED: transcription initiation factor TFIID subunit 11-like isoform X2 [Cicer arietinum] gi|502174102|ref|XP_004515436.1|
GO terms
2
Lj2g3v2017480.1
– General transcription factor IIE subunit [Medicago truncatula] gi|357481679|ref|XP_003611125.1|
GO terms
2
Lj3g3v1680410.1
– PREDICTED: transcription initiation factor IIA large subunit-like [Cicer arietinum] gi|502081823|ref|XP_004486980.1|
GO terms
2
Lj3g3v3235420.1
– PREDICTED: transcription initiation factor IIA large subunit-like [Cicer arietinum] gi|502081823|ref|XP_004486980.1|
GO terms
2
Lj4g3v0120130.1
– PREDICTED: transcription initiation factor IIF subunit alpha-like [Glycine max] gi|356555722|ref|XP_003546179.1|
GO terms
4
Lj4g3v0120130.2
– PREDICTED: transcription initiation factor IIF subunit alpha-like [Glycine max] gi|356555722|ref|XP_003546179.1|
GO terms
4
Lj4g3v0120130.3
– PREDICTED: transcription initiation factor IIF subunit alpha-like [Glycine max] gi|356555722|ref|XP_003546179.1|
GO terms
4
Lj4g3v0599890.1
– PREDICTED: general transcription factor IIE subunit 1-like [Cicer arietinum] gi|502151714|ref|XP_004508577.1|
GO terms
1
Lj4g3v2917640.1
– PREDICTED: general transcription factor IIE subunit 2-like [Glycine max] gi|356513413|ref|XP_003525408.1|
GO terms
2
Lj4g3v2973670.1
– PREDICTED: DNA repair helicase XPB1-like [Cicer arietinum] gi|502139224|ref|XP_004503689.1|
GO terms
3
Lj4g3v2978970.1
– PREDICTED: DNA repair helicase XPB1-like [Glycine max] gi|356513365|ref|XP_003525384.1|
GO terms
3
Lj6g3v0818980.1
– PREDICTED: transcription initiation factor TFIID subunit 6-like isoform 1 [Glycine max] gi|356527101|ref|XP_003532152.1|
GO terms
1
Lj6g3v1691350.1
– PREDICTED: transcription initiation factor IIF subunit beta-like [Glycine max] gi|356518378|ref|XP_003527856.1|
GO terms
3
Lj6g3v1766610.1
– PREDICTED: transcription initiation factor IIF subunit alpha-like isoform X1 [Cicer arietinum] gi|502079291|ref|XP_004486214.1|
GO terms
4
Lj6g3v1766610.2
– PREDICTED: transcription initiation factor IIF subunit alpha-like isoform X2 [Cicer arietinum] gi|502079294|ref|XP_004486215.1|
GO terms
4
Lj6g3v1786680.1
– PREDICTED: transcription initiation factor IIF subunit alpha-like [Glycine max] gi|356532499|ref|XP_003534809.1|
GO terms
4
Lj6g3v1786680.2
– PREDICTED: transcription initiation factor IIF subunit alpha-like [Glycine max] gi|356532499|ref|XP_003534809.1|
GO terms
4
Lj6g3v1786690.1
– Transcription initiation factor IIF subunit alpha [Medicago truncatula] gi|357447861|ref|XP_003594206.1|
GO terms
4
LotjaGi1g1v0135200.1
– Transcription initiation factor IIA subunit 2; TAIR: AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S); Swiss-Prot: sp|Q39236|T2AG_ARATH Transcription initiation factor IIA subunit 2; TrEMBL-Plants: tr|I3S8P2|I3S8P2_LOTJA Transcription initiation factor IIA subunit 2; Found in the gene: LotjaGi1g1v0135200
GO terms
2
LotjaGi1g1v0135200.2
– Transcription initiation factor IIA subunit 2; TAIR: AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S); Swiss-Prot: sp|Q39236|T2AG_ARATH Transcription initiation factor IIA subunit 2; TrEMBL-Plants: tr|I3S8P2|I3S8P2_LOTJA Transcription initiation factor IIA subunit 2; Found in the gene: LotjaGi1g1v0135200
GO terms
2
LotjaGi1g1v0346400.1
– Transcription initiation factor IIE subunit alpha; TAIR: AT1G03280.1 Transcription factor TFIIE, alpha subunit; Swiss-Prot: sp|Q557M8|T2EA_DICDI General transcription factor IIE subunit 1; TrEMBL-Plants: tr|A0A0S3R7K1|A0A0S3R7K1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0346400
GO terms
1
LotjaGi1g1v0424300.1
– Transcription initiation factor IIF subunit beta; TAIR: AT1G75510.1 Transcription initiation factor IIF, beta subunit; Swiss-Prot: sp|O94424|T2FB_SCHPO Transcription initiation factor IIF subunit beta; TrEMBL-Plants: tr|I3T827|I3T827_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0424300
GO terms
3
LotjaGi1g1v0424300.2
– Transcription initiation factor IIF subunit beta; TAIR: AT1G75510.1 Transcription initiation factor IIF, beta subunit; Swiss-Prot: sp|O94424|T2FB_SCHPO Transcription initiation factor IIF subunit beta; TrEMBL-Plants: tr|I3T827|I3T827_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0424300
GO terms
3
LotjaGi1g1v0539400.1
– Transcription initiation factor TFIID subunit 6; TAIR: AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59; Swiss-Prot: sp|Q9MAU3|TAF6_ARATH Transcription initiation factor TFIID subunit 6; TrEMBL-Plants: tr|A0A0L9UX09|A0A0L9UX09_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0539400
GO terms
5
LotjaGi2g1v0102000.1
– Transcription initiation factor IIF subunit beta, putative; TAIR: AT3G52270.1 Transcription initiation factor IIF, beta subunit; Swiss-Prot: sp|Q2T9L9|T2FB_BOVIN General transcription factor IIF subunit 2; TrEMBL-Plants: tr|K7KP46|K7KP46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0102000
GO terms
3
LotjaGi2g1v0144100_LC.1
– Transcription initiation factor IIE subunit alpha; TAIR: AT1G03280.1 Transcription factor TFIIE, alpha subunit; Swiss-Prot: sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha; TrEMBL-Plants: tr|I1K1A1|I1K1A1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0144100_LC
GO terms
1
LotjaGi2g1v0144100_LC.11
– Transcription initiation factor IIE subunit alpha; TAIR: AT1G03280.1 Transcription factor TFIIE, alpha subunit; Swiss-Prot: sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha; TrEMBL-Plants: tr|I1K1A1|I1K1A1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0144100_LC
GO terms
1
LotjaGi2g1v0144100_LC.2
– Transcription initiation factor IIE subunit alpha; TAIR: AT1G03280.1 Transcription factor TFIIE, alpha subunit; Swiss-Prot: sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha; TrEMBL-Plants: tr|I1K1A1|I1K1A1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0144100_LC
GO terms
1
LotjaGi2g1v0144100_LC.5
– Transcription initiation factor IIE subunit alpha; TAIR: AT1G03280.1 Transcription factor TFIIE, alpha subunit; Swiss-Prot: sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha; TrEMBL-Plants: tr|I1K1A1|I1K1A1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0144100_LC
GO terms
1
LotjaGi2g1v0144100_LC.6
– Transcription initiation factor IIE subunit alpha; TAIR: AT1G03280.1 Transcription factor TFIIE, alpha subunit; Swiss-Prot: sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha; TrEMBL-Plants: tr|I1K1A1|I1K1A1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0144100_LC
GO terms
1
LotjaGi2g1v0144100_LC.8
– Transcription initiation factor IIE subunit alpha; TAIR: AT1G03280.1 Transcription factor TFIIE, alpha subunit; Swiss-Prot: sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha; TrEMBL-Plants: tr|I1K1A1|I1K1A1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0144100_LC
GO terms
1
LotjaGi2g1v0144100_LC.9
– Transcription initiation factor IIE subunit alpha; TAIR: AT1G03280.1 Transcription factor TFIIE, alpha subunit; Swiss-Prot: sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha; TrEMBL-Plants: tr|I1K1A1|I1K1A1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0144100_LC
GO terms
1
LotjaGi2g1v0432600.1
– Transcription initiation factor IIE subunit beta; TAIR: AT4G20330.1 Transcription initiation factor TFIIE, beta subunit; Swiss-Prot: sp|P79011|T2EB_SCHPO Transcription initiation factor IIE subunit beta; TrEMBL-Plants: tr|I3SF72|I3SF72_LOTJA Transcription initiation factor IIE subunit beta; Found in the gene: LotjaGi2g1v0432600
GO terms
2
LotjaGi2g1v0432600.2
– Transcription initiation factor IIE subunit beta; TAIR: AT4G20330.1 Transcription initiation factor TFIIE, beta subunit; Swiss-Prot: sp|P79011|T2EB_SCHPO Transcription initiation factor IIE subunit beta; TrEMBL-Plants: tr|I3SF72|I3SF72_LOTJA Transcription initiation factor IIE subunit beta; Found in the gene: LotjaGi2g1v0432600
GO terms
2
LotjaGi3g1v0051800.3
– Transcription initiation factor TFIID subunit 11; TAIR: AT4G20280.1 TBP-associated factor 11; Swiss-Prot: sp|Q9M565|TAF11_ARATH Transcription initiation factor TFIID subunit 11; TrEMBL-Plants: tr|I3SI80|I3SI80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0051800
GO terms
2
LotjaGi3g1v0286400.1
– Transcription initiation factor IIA large subunit; TAIR: AT1G07470.1 Transcription factor IIA, alpha/beta subunit; Swiss-Prot: sp|Q9USU9|TOA1_SCHPO Transcription initiation factor IIA large subunit; TrEMBL-Plants: tr|A0A0B2RCP3|A0A0B2RCP3_GLYSO Transcription initiation factor IIA large subunit; Found in the gene: LotjaGi3g1v0286400
GO terms
2
LotjaGi3g1v0286400.2
– Transcription initiation factor IIA large subunit; TAIR: AT1G07470.1 Transcription factor IIA, alpha/beta subunit; Swiss-Prot: sp|Q9USU9|TOA1_SCHPO Transcription initiation factor IIA large subunit; TrEMBL-Plants: tr|A0A0B2RCP3|A0A0B2RCP3_GLYSO Transcription initiation factor IIA large subunit; Found in the gene: LotjaGi3g1v0286400
GO terms
2
LotjaGi3g1v0490400.1
– Transcription initiation factor IIA large subunit; TAIR: AT1G07480.1 Transcription factor IIA, alpha/beta subunit; Swiss-Prot: sp|Q9USU9|TOA1_SCHPO Transcription initiation factor IIA large subunit; TrEMBL-Plants: tr|V7BZ67|V7BZ67_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0490400
GO terms
2
LotjaGi4g1v0008900.1
– Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A0S3RA60|A0A0S3RA60_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008900
GO terms
4
LotjaGi4g1v0008900.2
– Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A0S3RA60|A0A0S3RA60_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008900
GO terms
4
LotjaGi4g1v0008900.3
– Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A0S3RA60|A0A0S3RA60_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008900
GO terms
4
LotjaGi4g1v0074700.1
– Transcription initiation factor IIE subunit alpha; TAIR: AT1G03280.1 Transcription factor TFIIE, alpha subunit; Swiss-Prot: sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha; TrEMBL-Plants: tr|A0A0S3R7K1|A0A0S3R7K1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0074700
GO terms
1
LotjaGi4g1v0074700.2
– Transcription initiation factor IIE subunit alpha; TAIR: AT1G03280.1 Transcription factor TFIIE, alpha subunit; Swiss-Prot: sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha; TrEMBL-Plants: tr|I1MUG7|I1MUG7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0074700
GO terms
1
LotjaGi4g1v0074700.3
– Transcription initiation factor IIE subunit alpha; TAIR: AT1G03280.1 Transcription factor TFIIE, alpha subunit; Swiss-Prot: sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha; TrEMBL-Plants: tr|I1MUG7|I1MUG7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0074700
GO terms
1
LotjaGi4g1v0237700.1
– Transcription initiation factor TFIID subunit 11; TAIR: AT4G20280.1 TBP-associated factor 11; Swiss-Prot: sp|Q9M565|TAF11_ARATH Transcription initiation factor TFIID subunit 11; TrEMBL-Plants: tr|I3SI80|I3SI80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0237700
GO terms
2
LotjaGi4g1v0237700.2
– Transcription initiation factor TFIID subunit 11; TAIR: AT4G20280.1 TBP-associated factor 11; Swiss-Prot: sp|Q9M565|TAF11_ARATH Transcription initiation factor TFIID subunit 11; TrEMBL-Plants: tr|I3SI80|I3SI80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0237700
GO terms
2
LotjaGi4g1v0237700.3
– Transcription initiation factor TFIID subunit 11; TAIR: AT4G20280.1 TBP-associated factor 11; Swiss-Prot: sp|Q9M565|TAF11_ARATH Transcription initiation factor TFIID subunit 11; TrEMBL-Plants: tr|I3SI80|I3SI80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0237700
GO terms
2
LotjaGi4g1v0423600.1
– Transcription initiation factor IIE subunit beta; TAIR: AT4G20330.1 Transcription initiation factor TFIIE, beta subunit; Swiss-Prot: sp|Q54KJ8|T2EB_DICDI General transcription factor IIE subunit 2; TrEMBL-Plants: tr|A0A072TV28|A0A072TV28_MEDTR Transcription initiation factor TFIIE, beta subunit; Found in the gene: LotjaGi4g1v0423600
GO terms
2
LotjaGi4g1v0423600.2
– Transcription initiation factor IIE subunit beta; TAIR: AT4G20330.1 Transcription initiation factor TFIIE, beta subunit; Swiss-Prot: sp|Q54KJ8|T2EB_DICDI General transcription factor IIE subunit 2; TrEMBL-Plants: tr|A0A072TV28|A0A072TV28_MEDTR Transcription initiation factor TFIIE, beta subunit; Found in the gene: LotjaGi4g1v0423600
GO terms
2
LotjaGi4g1v0428600.1
– DNA repair helicase; TAIR: AT5G41370.1 DNA repair helicase XPB1-like protein; Swiss-Prot: sp|Q38861|XPB1_ARATH DNA repair helicase XPB1; TrEMBL-Plants: tr|V7CS33|V7CS33_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0428600
GO terms
3
LotjaGi4g1v0428600.2
– DNA repair helicase; TAIR: AT5G41370.1 DNA repair helicase XPB1-like protein; Swiss-Prot: sp|Q38861|XPB1_ARATH DNA repair helicase XPB1; TrEMBL-Plants: tr|V7CS33|V7CS33_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0428600
GO terms
3
LotjaGi6g1v0035900.1
– Transcription initiation factor TFIID subunit 7; TAIR: AT1G55300.2 TBP-associated factor 7; Swiss-Prot: sp|B9DG24|TAF7_ARATH Transcription initiation factor TFIID subunit 7; TrEMBL-Plants: tr|K7M6Z5|K7M6Z5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0035900
GO terms
2
LotjaGi6g1v0035900.2
– Transcription initiation factor TFIID subunit 7; TAIR: AT1G55300.1 TBP-associated factor 7; Swiss-Prot: sp|B9DG24|TAF7_ARATH Transcription initiation factor TFIID subunit 7; TrEMBL-Plants: tr|I1KFI5|I1KFI5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0035900
GO terms
2
LotjaGi6g1v0153200.1
– Transcription initiation factor TFIID subunit 6; TAIR: AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59; Swiss-Prot: sp|Q9MAU3|TAF6_ARATH Transcription initiation factor TFIID subunit 6; TrEMBL-Plants: tr|A0A151SBK3|A0A151SBK3_CAJCA Transcription initiation factor TFIID subunit 6; Found in the gene: LotjaGi6g1v0153200
GO terms
5
LotjaGi6g1v0153200.2
– Transcription initiation factor TFIID subunit 6; TAIR: AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59; Swiss-Prot: sp|Q9MAU3|TAF6_ARATH Transcription initiation factor TFIID subunit 6; TrEMBL-Plants: tr|A0A151SBK3|A0A151SBK3_CAJCA Transcription initiation factor TFIID subunit 6; Found in the gene: LotjaGi6g1v0153200
GO terms
5
LotjaGi6g1v0153200.3
– Transcription initiation factor TFIID subunit 6; TAIR: AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59; Swiss-Prot: sp|Q9MAU3|TAF6_ARATH Transcription initiation factor TFIID subunit 6; TrEMBL-Plants: tr|A0A151SBK3|A0A151SBK3_CAJCA Transcription initiation factor TFIID subunit 6; Found in the gene: LotjaGi6g1v0153200
GO terms
5
LotjaGi6g1v0153200.4
– Transcription initiation factor TFIID subunit 6; TAIR: AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59; Swiss-Prot: sp|Q9MAU3|TAF6_ARATH Transcription initiation factor TFIID subunit 6; TrEMBL-Plants: tr|A0A151SBK3|A0A151SBK3_CAJCA Transcription initiation factor TFIID subunit 6; Found in the gene: LotjaGi6g1v0153200
GO terms
5
LotjaGi6g1v0287300.1
– Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A151T6L6|A0A151T6L6_CAJCA Transcription initiation factor IIF subunit alpha; Found in the gene: LotjaGi6g1v0287300
GO terms
4

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0032968
Biological process Positive regulation of transcription elongation from RNA polymerase II promoter 1 1.52