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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0433500 |
| Transcript ID | LotjaGi2g1v0433500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Copper-transporting ATPase; TAIR: AT1G63440.1 heavy metal atpase 5; Swiss-Prot: sp|Q9SH30|HMA5_ARATH Probable copper-transporting ATPase HMA5; TrEMBL-Plants: tr|V7CMK1|V7CMK1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0433500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93029745..93030655) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTGGGAATAAAAAATTAATGTTGGACCATAACATAGCCATTTTAGTGGATGCTGAAGAAGAACTAGAAAAAATTGA AAGCCTGGCTCAAACTGGGATCTTAGTATCCTTGGATGGAGATGTCATTGGAGTTTTGGCTGTATCTGACCCACTGAAAC CAAATGCCAGAGAAGTTGTTTCTATCCTTAACTCCATGAATATTAGGAGCATCATGGTGACAGGTGATAACTGGGGAACT GCCAATTCCATTGCTAGACAAGCTGGTATTGAAACTGTCATTGCAGAGGCTCAACCTCAGACTAAAGCGACTAAAGTGAA AGAGTTGCAGGTACATACTAAACCATGGTCCCAATGATTGCTTAAAACTTTTTATTATTAAATTCATGTACTTAATAACT TATTAAATGGAATAAGATTCACAAAGGCATCTTGTGTGTGTGTCAGTCACCCTGAATTAATCAACTTTTTATGTTTAACT TCATGGATATGCAGACTTCTGGCTACACTGTGGCAATGGTGGGAGATGGAATCAACGACTCACCAGCACTGGTGGCAGCT GATGTTGGAATTGCAATTGGTGCTGGCACAGACATAGCTATTGAGGCATCTGATATAGTTCTAATGAGGAGTAACTTGGA GGATATAATAATTGCCATTGATCTGGCAAAGAAAACTTTCTCTCGTATCCGTTTGAACTACATTTGGGCCATGGGTTATA ATCTGCTGGCTATCCCAATTGCCGCAGGAATCCTTTACCCGTTCATTAGATTTCGGTTACACCCATGGATTGCTGGAGTT GCAATGGCTGCTTCTTCTGTCAGTGTTGTATGTTCCTCCCTCTTGTTGAAGTTTTATAAAAGACCAAACAAGCTAAACAA CTTGGAGATAAATGGTATAAAGATTGAATAA
CDS sequence (LotjaGi2g1v0433500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGGGAATAAAAAATTAATGTTGGACCATAACATAGCCATTTTAGTGGATGCTGAAGAAGAACTAGAAAAAATTGA AAGCCTGGCTCAAACTGGGATCTTAGTATCCTTGGATGGAGATGTCATTGGAGTTTTGGCTGTATCTGACCCACTGAAAC CAAATGCCAGAGAAGTTGTTTCTATCCTTAACTCCATGAATATTAGGAGCATCATGGTGACAGGTGATAACTGGGGAACT GCCAATTCCATTGCTAGACAAGCTGGTATTGAAACTGTCATTGCAGAGGCTCAACCTCAGACTAAAGCGACTAAAGTGAA AGAGTTGCAGACTTCTGGCTACACTGTGGCAATGGTGGGAGATGGAATCAACGACTCACCAGCACTGGTGGCAGCTGATG TTGGAATTGCAATTGGTGCTGGCACAGACATAGCTATTGAGGCATCTGATATAGTTCTAATGAGGAGTAACTTGGAGGAT ATAATAATTGCCATTGATCTGGCAAAGAAAACTTTCTCTCGTATCCGTTTGAACTACATTTGGGCCATGGGTTATAATCT GCTGGCTATCCCAATTGCCGCAGGAATCCTTTACCCGTTCATTAGATTTCGGTTACACCCATGGATTGCTGGAGTTGCAA TGGCTGCTTCTTCTGTCAGTGTTGTATGTTCCTCCCTCTTGTTGAAGTTTTATAAAAGACCAAACAAGCTAAACAACTTG GAGATAAATGGTATAAAGATTGAATAA
Protein sequence (LotjaGi2g1v0433500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGNKKLMLDHNIAILVDAEEELEKIESLAQTGILVSLDGDVIGVLAVSDPLKPNAREVVSILNSMNIRSIMVTGDNWGT ANSIARQAGIETVIAEAQPQTKATKVKELQTSGYTVAMVGDGINDSPALVAADVGIAIGAGTDIAIEASDIVLMRSNLED IIIAIDLAKKTFSRIRLNYIWAMGYNLLAIPIAAGILYPFIRFRLHPWIAGVAMAASSVSVVCSSLLLKFYKRPNKLNNL EINGIKIE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 51 | 51 | 1.9E-59 | ||
| Phobius | 1 | 178 | 178 | - | – | |
| PANTHER | 1 | 248 | 248 | 8.5E-131 | – | |
| Pfam | 2 | 133 | 132 | 6.7E-28 | – | |
| TIGRFAM | 16 | 196 | 181 | 1.3E-46 | ||
| SUPERFAMILY | 27 | 225 | 199 | 1.36E-50 | ||
| PRINTS | 44 | 55 | 12 | 8.9E-20 | – | |
| Gene3D | 52 | 171 | 120 | 1.9E-59 | ||
| PRINTS | 66 | 76 | 11 | 8.9E-20 | – | |
| PRINTS | 119 | 138 | 20 | 8.9E-20 | – | |
| PRINTS | 142 | 154 | 13 | 8.9E-20 | – | |
| TMHMM | 179 | 201 | 23 | - | – | |
| Phobius | 179 | 201 | 23 | - | – | |
| Phobius | 202 | 206 | 5 | - | – | |
| TMHMM | 206 | 228 | 23 | - | – | |
| Phobius | 207 | 228 | 22 | - | – | |
| Phobius | 229 | 248 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0433500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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