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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0449800 |
| Transcript ID | LotjaGi2g1v0449800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor TFIIIB component B; TAIR: AT4G39160.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|O94481|TFC5_SCHPO Transcription factor TFIIIB component B''; TrEMBL-Plants: tr|A0A0B2RTI6|A0A0B2RTI6_GLYSO Transcription factor TFIIIB component B; Found in the gene: LotjaGi2g1v0449800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94338055..94344076) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAATCATTAGGTTTTTATTTATTTTTTATTAGTTTATTTGGTTCAAGCATGGGCTGAGTGTACCTCTATTTATAGTT TTTGGGAGAATTAGGATTCACTTTTTAGGACTATGCATGCTTGATTCACTTGAGCATAACATCTATGTCAATTTAGAGTA TTAGATCCTTTTAAGCGGTATTTAAAAACTCGTGCTTGGTCGAACCCGGTTCGACCATTTAAAAAAAAACCACGGAAAGG ATGCGTTTTAGAAGACTGACAGATTAGGTCTCCTCACGGCTTAAAATCTTGTCTCTCTCTCTGCTTACGTGACGTCGCAA CCGCTTCATCGCCGTCGCAACTGGTTCACGTCGCCTGCACGAGCTCGCTACCTCGCCCAGTCCGCTCCGAGCCCACCGTG CCTGCAGGCTGCAGGAGGAGAGCAACAACGACGTCTTTGTCTCTGACCACAACGTCTCCTTCTTAGTCCTGGTGATCGTC TTTATGGTTGTTATCAGTATACTACAGGTACATGATGTCATTATTCTTCTTCTTATTTATCATATGGGATGGATGAAACT TCATTGTTATGGAACTTGGAATAGGAATTTGATGTTAGGAATGTACAAGAGTTATAGGTGAAGGAATTACATTATCACAT TTTGAGTTCAATTGTTTCAACTTGTGATTTTTATAATATTAAATGTTTGTTCACAAATATTTATAAAATTTGAGTTACTT TGATATGATTATCAACTGTCACAGTTCATTCACTATAATGTCATTTGATTCATGCACTATACATACTTGATTCCACTCAG TGGAGATTGACTTTGTTGTTATTTAAATAATTAGTCATATTAATATATTATTTCCGAGCTTAACCGCGTCTGCTATGAAA TGGCGAATTGATATTCTAGTCTAAGCTCTCTGGCAAGGATGGTGGGGTGGCTGCAATTTTGTTCAAAACCATACATTTTT TGACTTAGTTGCGTTGATATTTAAGTTCTGTTTGATAGGTGTGCCTGATCTGCTACTTACAATCTGCTGTTTTTCAGGAT AATTCTTGTATGGTTTTCCAGCTTTAGCTAGTATAGTCAACCTCATTAATTACCCCATGGATGCTTTTGATGATATTCTA TCCGGAGCTCCTGCTCCACGTGGTAAGTGCTACACTCAAAAGATACTGGGAAAGCTTCTTATTTTTATCATGTTCGTGTC ATGTGGTTATATTTTATTCTTTTGTAGCTCGTCGAGGTAGCAAGTTTATGCCAAAGGCCAAACTGAAACAGCTTCCTCAA AAGGAAATATCTGCATCAGAACACGCGACCTCATCTAAAGATGGAGAGAACGTGCCTGTTGCTTCATCAGCCACAAGCAC AAAATCAGGAGGAATTTTGAATGAATGTCATGATGCTGTTGCTTCAACTTTAAGTACATCAGCTGAAGATTCTATCAGGT CCAATCATCGACCACAGGAAGAACTTTCAAATTTGGAGGATGCCACAAAATCAGCATCTGAAGGCCTTGAGGCGGGTTTA GTCACTAACTCTATTCCTGAGACCAATCTCAATAATGGTAAGTTAGTTATGCTTTCACATTGTTTGTGTCTGTGAAGTCT CTTTGCTTCAGGTTGAACTTGTTCACGTGTCACAAGGCATAAGACTTCACTTGGATTGAAGTTAGTCTGATCCATTTGGT ATTTATTATTTGGTTTAGGGGCAAAACAACCAATCCACCCTGCTAATGCTGTAGAAAATGAAAATACTGTGGCTGCTCAA TCTACAACTAACTCATCCATCAGTAGGATGGAAGAGCCACCTAAAAGTGGGGAAGGTTCAATTCCTGATAGCAACAAAAA TTTGGAACATATTGATAATTCAGTGCCAGTTATCCCAGATGCAAACTTCAAGAGTGCTTTGGAGAATAATGCTGTAACAT TTGAGAGCAATATTCATTCAAATTTGAATTTTCGTTGTTTTTTTCCATGTAGTTCTACTGCTTCAGATGGATGTAATAAA CTTATGGAGCAAATTTTGTTTTCAGGCAGTGTCTGGGGAATCGGAATGGAATCCTTTCAGCGACGCCCTCCCTGATCCTG GCACTAGGAATGGTTAGTAATATCCCTGCTATCCTAAATGTGCTTCATATAACTGAAAAGGTAAACCTGTGTTTGTTTTA CTGTAGCTCGTAAGTTTCAACCCAAGATTAAGCCACGACCTAGAGTAAGCATTGCACCGGCTATCGCTTCTGCATCATCT AGTGATATGATGGAAAAGTCTACTCAGTTGCATGTTTCTTGCACAAATGAAGTTCAATCTTTTCAGTTTAGTGGTGATGG CATTTGTGGGCAAAATACATTCTCTGAAGACAAAAGAAACATGGCATCAGTTACTCCTTCCCAACCAGATTCCCTGAATG CTATGCCTTCGGAGGTTACAGCTCATGATGGAACTAGAGATTCGGCTTCTAGTTTTGGAAAACCAGCTCCTGATAATCTT ACCACCCAAGATCCATTAACCTTAAATGAAGCTGCAGTCTTCGAGGAGGATGATACTCACACTAACATTAGAAGGTTGGA AACAGAGGTGAAATTTGTGTGATTTCAAAAATATGATAGTTTCCTGTAAAATATGCCAAATAATTAATTGATCATTTTTT TGATATAAAATTGATCATGGTTATTATTTTTGTCAGGAAGTTGTGGACTTGAATACTGCCTGCTCAAATGGTGGCGTCTT TGATTATCAATCAATAGATTCTGCCACAGATCCAACTTCTGAAATTCCAGTGAATGAAGAATTGACAAATGCTGCAGATT GTCCCACGTTGGCTGATGTTTTGCATAAAGATGTTACTGTAGAAAAAGAAGTATATATCGGTTATTATGATTTATCGTGT ATTTATTTTCATTTTTCTTTTTATGAATCTTATTGTTGATGATTTCTTTTATTTCATTTACTATGTTTCTCAGGTTGCCA ATGGAAGAAAGAAGGATAGTTCCCTGAGGAAGCACAGAAGATCTACTGCTGGCGAGGAGGACAAAGGGGGTAAAACCGCA AGGCAGCTGAGAAAAAGTGCAGCTCGAGAACCTGCTAACAGCTCATTGAATAAGGATGTTGATGATGATGGTGACATTGA CCCTCTGTATAATTATAATATAGATGAACTAGAAGAAAATGATGATGAAGACGAACTAGATTATTCATCCAAGAAGAAAA CAACATCAACCAGTTCAAAGAAGAAATCTGTGGCTAAAAATGAAAAAACGTCTCAAAAGCGTAAGAAGTCTAATGATGAT TTAGAAAATACTACTAAAAAATCTCTGAAAAAGTTCTCTCATTCCACCCTACGAAGAAAACGATGTGGTAAACTTGCTAA GACTATTTGTGTTTTTAACTTTTTTTTTGTTTTGTTTATTTTATCTTGTATGATTGTTATAAGTGTTTTCCTTTTATAGA GGATCTGCTGAAAACTCCTGAAGATGAATGGGATCCTCGAAATATGCCTATAAAGGATATTATTATACTTGCAGAATATA AGGAGCGGTTGGCGGTGTGTATTCTCAATTTTAATCCCTGTATTACAATGCCCAACAATTGTTAGTATTGCATGATGGCT TAAGTTTTCACCAACTATTCTGTTCGTTTCTCTATGTAGAAAAAGGACCCAACAACTTCAAAAACATCTTCCACCAATCA AAGGTACACTCAACTTTAGTAACATTGCATATCTAGATTTTATTTAATTTTCTGGTCCTGTTAATCCTTGTCTAATATGA AAGTAGAATAAGTACACTGCAAAATCAATTAATTTGGAAAATTAACTGCTGTAAACATCTTATTTACTACAATTCTTTGT ATTTTTTTACAATCTTATACTATTGAATTAAGTTATATCTGACAATGTATATAAACTTATTTGATAAAGGAAATGCTTTT TATTCCTTCTCTTTTCTTTCCCTGGAGACAAGTGCATGTACTTGGACATAACCATCATATGGCTTAAGTTATTCTTCTCT CTTTTAACGATTCAATTACTTTCCTCCATCAAATTATCAAAATGGTCTGTAACTGAATGGAATGGATGTAATGCTGTCAA TAAAGTGCATTGTTTTCACTTTTGCTGGCCTAAGTTGGGTTGAGGGCTGAGGCAGGAAGAGGGCTATAGATTTGATAGTG GTGCTTTTCCCTGCGTCCACAATGAGATGTAGTCAGTGCAATTTAGGGATACAAATTGAAGGTCCTTGTATTTTTGGTGT TCGTCAAGGCACTCATGCTTTTGGATCACTACTTCCTCTCAGTATTTTGAGAACAGAAATGTATAGGGAAACATTATATA TATATAAAATGCGCTCCATATTATCCACTAGCTATTGTCACTGTCACTTCGAAGTTCTATGTGGTGCAGTAAATAGATTT TAGTTTGCAAAATATTTGTGTGCAGTGGTGGAGATCCTTTTTATGAAGCCGGTGCCAATTACGAAGAGGGGTTCTTTGGC TCAGAAAACCCAAATGATAATCAAGACACTGAAAATGTTACAGACACTACCGCTTTAATTAATTACCAGTCCTTCATGGA CAAGGCACCTAGGGGAAAATGGTCAAAACAAGACACTGAACTGTTTTATGAGGTATCTGCATAATTCTCACAAGATTTAT GATGTTATTATTTCTCTTAAACACAGCTGCATACCTACCAATTATATCATTTGTGATTTGGGGAATGGGAATGAGAGAAG GAGCAATCTTATTTAGTAAATTAACTAATTTTTTTTTAAACACAGGCTGTTAGGGAGTTTGGCACAGATTTTTCTATGAT TCAACAGCTTTTCCCTGATCGAACACGTCATCAAATTAAGTTGAAGTACAAGAAGGAAGAGCGGCAGCATCCTTTACAGT TATCCGATGCTGTGAATAGTCGTTCAAAAGGTTGAACTCTTTATTTACCATTCTGTATTGTTCTCAGACAGTGTTTACTC TTTAAGCAGAGTCCAGAAATGATCCTCAAGATTCATTTCTTTTGATGACTTATTCTTTACTTTATCATGGCTAAAAATAA GTTTTTAATGGTTTACTGTTCTTCACATATACTCTTATGATTACTGAATATCTATTCTTTTCCTCTGCTAGATCTGTCTC ATTTTAAAAAGGTGATTGAGCGGTTGCAACAAGCTTCTGACAAGGCTGAACAAGACGCCAATGAAGATGTTGAGGACCTA ACACCTGAAACTAATGTATGCATTTTCTGCCCATTTAGTTTATCTTCTGATGCCTCCTTTCTTTTGGTGTACATAGTTCA TGCTAATTTTCTTATAAATGCCATAATTATCAGATCACCAAGATAAATTGCCTTGATTATTTGTTCTCTCCTATTTTTTT CAATAGAAAATGATTAAATCCACATATTAGTAGCTTTCTGAAGTCTGAATAGTATATTATCCCCTAATTGGCTTTCAAAA CTCATTTTATGCATGCAGGAGGAGGTTGCAACAACTGAGAAGGACACTGACGATGTTGAAACAACTAAGCAGGACACCAA TGTTAAAGATCAGGAAGATTCTGCAGCAATTCATGATCCAGAACAACCTGATAATGATGATGATGATGAGGATTACTCTC AAATATGGTCTTATACAAGTGAATTTTGATGATTACTAGTAGTATTATGGTCCCATTGTGTTTTAATTTTTTTAATGTGA AATGTGATTGTTGTAACGTGAAATTCTTTTTATTACTGATTATTCACGAGATCACTTCTTTTGATTTTTATAATCAAGGT CCTGGGCATTTATTTCCTATTTTTTTTCCAATCTTGGTTACTCATGATATGATTTTTTTCCAATCTTGGTAGTTACAAAG AATATGATCCATGAAAAGCTATTCAAATAGCACCCTGGTAATTAAATGGATAGTTGTTATCTCTTTATGAGTTGGCAAAT TGCCCTTTAAAAATGATAAAAAAAAATTAGTTTCATTATTTTCATTCCATAAAATTTAAGGAAAATGAGAATGTATTTCA TTCCACAAAGGTGGTGTTTTTC
CDS sequence (LotjaGi2g1v0449800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCTTTTGATGATATTCTATCCGGAGCTCCTGCTCCACGTGCTCGTCGAGGTAGCAAGTTTATGCCAAAGGCCAA ACTGAAACAGCTTCCTCAAAAGGAAATATCTGCATCAGAACACGCGACCTCATCTAAAGATGGAGAGAACGTGCCTGTTG CTTCATCAGCCACAAGCACAAAATCAGGAGGAATTTTGAATGAATGTCATGATGCTGTTGCTTCAACTTTAAGTACATCA GCTGAAGATTCTATCAGGTCCAATCATCGACCACAGGAAGAACTTTCAAATTTGGAGGATGCCACAAAATCAGCATCTGA AGGCCTTGAGGCGGGTTTAGTCACTAACTCTATTCCTGAGACCAATCTCAATAATGGGGCAAAACAACCAATCCACCCTG CTAATGCTGTAGAAAATGAAAATACTGTGGCTGCTCAATCTACAACTAACTCATCCATCAGTAGGATGGAAGAGCCACCT AAAAGTGGGGAAGGTTCAATTCCTGATAGCAACAAAAATTTGGAACATATTGATAATTCAGTGCCAGTTATCCCAGATGC AAACTTCAAGAGTGCTTTGGAGAATAATGCTGCAGTGTCTGGGGAATCGGAATGGAATCCTTTCAGCGACGCCCTCCCTG ATCCTGGCACTAGGAATGCTCGTAAGTTTCAACCCAAGATTAAGCCACGACCTAGAGTAAGCATTGCACCGGCTATCGCT TCTGCATCATCTAGTGATATGATGGAAAAGTCTACTCAGTTGCATGTTTCTTGCACAAATGAAGTTCAATCTTTTCAGTT TAGTGGTGATGGCATTTGTGGGCAAAATACATTCTCTGAAGACAAAAGAAACATGGCATCAGTTACTCCTTCCCAACCAG ATTCCCTGAATGCTATGCCTTCGGAGGTTACAGCTCATGATGGAACTAGAGATTCGGCTTCTAGTTTTGGAAAACCAGCT CCTGATAATCTTACCACCCAAGATCCATTAACCTTAAATGAAGCTGCAGTCTTCGAGGAGGATGATACTCACACTAACAT TAGAAGGTTGGAAACAGAGGAAGTTGTGGACTTGAATACTGCCTGCTCAAATGGTGGCGTCTTTGATTATCAATCAATAG ATTCTGCCACAGATCCAACTTCTGAAATTCCAGTGAATGAAGAATTGACAAATGCTGCAGATTGTCCCACGTTGGCTGAT GTTTTGCATAAAGATGTTACTGTAGAAAAAGAAGTTGCCAATGGAAGAAAGAAGGATAGTTCCCTGAGGAAGCACAGAAG ATCTACTGCTGGCGAGGAGGACAAAGGGGGTAAAACCGCAAGGCAGCTGAGAAAAAGTGCAGCTCGAGAACCTGCTAACA GCTCATTGAATAAGGATGTTGATGATGATGGTGACATTGACCCTCTGTATAATTATAATATAGATGAACTAGAAGAAAAT GATGATGAAGACGAACTAGATTATTCATCCAAGAAGAAAACAACATCAACCAGTTCAAAGAAGAAATCTGTGGCTAAAAA TGAAAAAACGTCTCAAAAGCGTAAGAAGTCTAATGATGATTTAGAAAATACTACTAAAAAATCTCTGAAAAAGTTCTCTC ATTCCACCCTACGAAGAAAACGATGTGAGGATCTGCTGAAAACTCCTGAAGATGAATGGGATCCTCGAAATATGCCTATA AAGGATATTATTATACTTGCAGAATATAAGGAGCGGTTGGCGAAAAAGGACCCAACAACTTCAAAAACATCTTCCACCAA TCAAAGTGGTGGAGATCCTTTTTATGAAGCCGGTGCCAATTACGAAGAGGGGTTCTTTGGCTCAGAAAACCCAAATGATA ATCAAGACACTGAAAATGTTACAGACACTACCGCTTTAATTAATTACCAGTCCTTCATGGACAAGGCACCTAGGGGAAAA TGGTCAAAACAAGACACTGAACTGTTTTATGAGGCTGTTAGGGAGTTTGGCACAGATTTTTCTATGATTCAACAGCTTTT CCCTGATCGAACACGTCATCAAATTAAGTTGAAGTACAAGAAGGAAGAGCGGCAGCATCCTTTACAGTTATCCGATGCTG TGAATAGTCGTTCAAAAGATCTGTCTCATTTTAAAAAGGTGATTGAGCGGTTGCAACAAGCTTCTGACAAGGCTGAACAA GACGCCAATGAAGATGTTGAGGACCTAACACCTGAAACTAATGAGGAGGTTGCAACAACTGAGAAGGACACTGACGATGT TGAAACAACTAAGCAGGACACCAATGTTAAAGATCAGGAAGATTCTGCAGCAATTCATGATCCAGAACAACCTGATAATG ATGATGATGATGAGGATTACTCTCAAATATGGTCTTATACAAGTGAATTTTGA
Protein sequence (LotjaGi2g1v0449800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAFDDILSGAPAPRARRGSKFMPKAKLKQLPQKEISASEHATSSKDGENVPVASSATSTKSGGILNECHDAVASTLSTS AEDSIRSNHRPQEELSNLEDATKSASEGLEAGLVTNSIPETNLNNGAKQPIHPANAVENENTVAAQSTTNSSISRMEEPP KSGEGSIPDSNKNLEHIDNSVPVIPDANFKSALENNAAVSGESEWNPFSDALPDPGTRNARKFQPKIKPRPRVSIAPAIA SASSSDMMEKSTQLHVSCTNEVQSFQFSGDGICGQNTFSEDKRNMASVTPSQPDSLNAMPSEVTAHDGTRDSASSFGKPA PDNLTTQDPLTLNEAAVFEEDDTHTNIRRLETEEVVDLNTACSNGGVFDYQSIDSATDPTSEIPVNEELTNAADCPTLAD VLHKDVTVEKEVANGRKKDSSLRKHRRSTAGEEDKGGKTARQLRKSAAREPANSSLNKDVDDDGDIDPLYNYNIDELEEN DDEDELDYSSKKKTTSTSSKKKSVAKNEKTSQKRKKSNDDLENTTKKSLKKFSHSTLRRKRCEDLLKTPEDEWDPRNMPI KDIIILAEYKERLAKKDPTTSKTSSTNQSGGDPFYEAGANYEEGFFGSENPNDNQDTENVTDTTALINYQSFMDKAPRGK WSKQDTELFYEAVREFGTDFSMIQQLFPDRTRHQIKLKYKKEERQHPLQLSDAVNSRSKDLSHFKKVIERLQQASDKAEQ DANEDVEDLTPETNEEVATTEKDTDDVETTKQDTNVKDQEDSAAIHDPEQPDNDDDDEDYSQIWSYTSEF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 177 | 177 | - | – | |
| MobiDBLite | 36 | 65 | 30 | - | – | |
| MobiDBLite | 98 | 157 | 60 | - | – | |
| PANTHER | 159 | 780 | 622 | 7.1E-68 | – | |
| PANTHER | 159 | 780 | 622 | 7.1E-68 | – | |
| MobiDBLite | 199 | 231 | 33 | - | – | |
| MobiDBLite | 284 | 299 | 16 | - | – | |
| MobiDBLite | 284 | 326 | 43 | - | – | |
| MobiDBLite | 307 | 326 | 20 | - | – | |
| MobiDBLite | 412 | 535 | 124 | - | – | |
| MobiDBLite | 425 | 445 | 21 | - | – | |
| MobiDBLite | 466 | 485 | 20 | - | – | |
| MobiDBLite | 502 | 529 | 28 | - | – | |
| Coils | 507 | 527 | 21 | - | – | |
| Pfam | 631 | 715 | 85 | 3.7E-28 | ||
| ProSiteProfiles | 636 | 684 | 49 | 10.062 | ||
| SMART | 637 | 685 | 49 | 3.2E-10 | ||
| SUPERFAMILY | 639 | 687 | 49 | 6.8E-11 | ||
| CDD | 640 | 681 | 42 | 1.39386E-8 | ||
| Gene3D | 641 | 717 | 77 | 8.2E-10 | – | |
| Coils | 701 | 728 | 28 | - | – | |
| MobiDBLite | 713 | 790 | 78 | - | – | |
| MobiDBLite | 735 | 769 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0449800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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