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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0449800 |
| Transcript ID | LotjaGi2g1v0449800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor TFIIIB component B; TAIR: AT4G39160.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|O94481|TFC5_SCHPO Transcription factor TFIIIB component B''; TrEMBL-Plants: tr|A0A1J7GCE5|A0A1J7GCE5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0449800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94338193..94343852) extracted from Lotus japonicus Gifu genome v1.2.
AAAAACCACGGAAAGGATGCGTTTTAGAAGACTGACAGATTAGGTCTCCTCACGGCTTAAAATCTTGTCTCTCTCTCTGC TTACGTGACGTCGCAACCGCTTCATCGCCGTCGCAACTGGTTCACGTCGCCTGCACGAGCTCGCTACCTCGCCCAGTCCG CTCCGAGCCCACCGTGCCTGCAGGCTGCAGGAGGAGAGCAACAACGACGTCTTTGTCTCTGACCACAACGTCTCCTTCTT AGTCCTGGTGATCGTCTTTATGGTTGTTATCAGTATACTACAGGTACATGATGTCATTATTCTTCTTCTTATTTATCATA TGGGATGGATGAAACTTCATTGTTATGGAACTTGGAATAGGAATTTGATGTTAGGAATGTACAAGAGTTATAGGTGAAGG AATTACATTATCACATTTTGAGTTCAATTGTTTCAACTTGTGATTTTTATAATATTAAATGTTTGTTCACAAATATTTAT AAAATTTGAGTTACTTTGATATGATTATCAACTGTCACAGTTCATTCACTATAATGTCATTTGATTCATGCACTATACAT ACTTGATTCCACTCAGTGGAGATTGACTTTGTTGTTATTTAAATAATTAGTCATATTAATATATTATTTCCGAGCTTAAC CGCGTCTGCTATGAAATGGCGAATTGATATTCTAGTCTAAGCTCTCTGGCAAGGATGGTGGGGTGGCTGCAATTTTGTTC AAAACCATACATTTTTTGACTTAGTTGCGTTGATATTTAAGTTCTGTTTGATAGGTGTGCCTGATCTGCTACTTACAATC TGCTGTTTTTCAGGATAATTCTTGTATGGTTTTCCAGCTTTAGCTAGTATAGTCAACCTCATTAATTACCCCATGGATGC TTTTGATGATATTCTATCCGGAGCTCCTGCTCCACGTGGTAAGTGCTACACTCAAAAGATACTGGGAAAGCTTCTTATTT TTATCATGTTCGTGTCATGTGGTTATATTTTATTCTTTTGTAGCTCGTCGAGGTAGCAAGTTTATGCCAAAGGCCAAACT GAAACAGCTTCCTCAAAAGGAAATATCTGCATCAGAACACGCGACCTCATCTAAAGATGGAGAGAACGTGCCTGTTGCTT CATCAGCCACAAGCACAAAATCAGGAGGAATTTTGAATGAATGTCATGATGCTGTTGCTTCAACTTTAAGTACATCAGCT GAAGATTCTATCAGGTCCAATCATCGACCACAGGAAGAACTTTCAAATTTGGAGGATGCCACAAAATCAGCATCTGAAGG CCTTGAGGCGGGTTTAGTCACTAACTCTATTCCTGAGACCAATCTCAATAATGGTAAGTTAGTTATGCTTTCACATTGTT TGTGTCTGTGAAGTCTCTTTGCTTCAGGTTGAACTTGTTCACGTGTCACAAGGCATAAGACTTCACTTGGATTGAAGTTA GTCTGATCCATTTGGTATTTATTATTTGGTTTAGGGGCAAAACAACCAATCCACCCTGCTAATGCTGTAGAAAATGAAAA TACTGTGGCTGCTCAATCTACAACTAACTCATCCATCAGTAGGATGGAAGAGCCACCTAAAAGTGGGGAAGGTTCAATTC CTGATAGCAACAAAAATTTGGAACATATTGATAATTCAGTGCCAGTTATCCCAGATGCAAACTTCAAGAGTGCTTTGGAG AATAATGCTGTAACATTTGAGAGCAATATTCATTCAAATTTGAATTTTCGTTGTTTTTTTCCATGTAGTTCTACTGCTTC AGATGGATGTAATAAACTTATGGAGCAAATTTTGTTTTCAGGCAGTGTCTGGGGAATCGGAATGGAATCCTTTCAGCGAC GCCCTCCCTGATCCTGGCACTAGGAATGGTTAGTAATATCCCTGCTATCCTAAATGTGCTTCATATAACTGAAAAGGTAA ACCTGTGTTTGTTTTACTGTAGCTCGTAAGTTTCAACCCAAGATTAAGCCACGACCTAGAGTAAGCATTGCACCGGCTAT CGCTTCTGCATCATCTAGTGATATGATGGAAAAGTCTACTCAGTTGCATGTTTCTTGCACAAATGAAGTTCAATCTTTTC AGTTTAGTGGTGATGGCATTTGTGGGCAAAATACATTCTCTGAAGACAAAAGAAACATGGCATCAGTTACTCCTTCCCAA CCAGATTCCCTGAATGCTATGCCTTCGGAGGTTACAGCTCATGATGGAACTAGAGATTCGGCTTCTAGTTTTGGAAAACC AGCTCCTGATAATCTTACCACCCAAGATCCATTAACCTTAAATGAAGCTGCAGTCTTCGAGGAGGATGATACTCACACTA ACATTAGAAGGTTGGAAACAGAGGTGAAATTTGTGTGATTTCAAAAATATGATAGTTTCCTGTAAAATATGCCAAATAAT TAATTGATCATTTTTTTGATATAAAATTGATCATGGTTATTATTTTTGTCAGGAAGTTGTGGACTTGAATACTGCCTGCT CAAATGGTGGCGTCTTTGATTATCAATCAATAGATTCTGCCACAGATCCAACTTCTGAAATTCCAGTGAATGAAGAATTG ACAAATGCTGCAGATTGTCCCACGTTGGCTGATGTTTTGCATAAAGATGTTACTGTAGAAAAAGAAGTATATATCGGTTA TTATGATTTATCGTGTATTTATTTTCATTTTTCTTTTTATGAATCTTATTGTTGATGATTTCTTTTATTTCATTTACTAT GTTTCTCAGGTTGCCAATGGAAGAAAGAAGGATAGTTCCCTGAGGAAGCACAGAAGATCTACTGCTGGCGAGGAGGACAA AGGGGGTAAAACCGCAAGGCAGCTGAGAAAAAGTGCAGCTCGAGAACCTGCTAACAGCTCATTGAATAAGGATGTTGATG ATGATGGTGACATTGACCCTCTGTATAATTATAATATAGATGAACTAGAAGAAAATGATGATGAAGACGAACTAGATTAT TCATCCAAGAAGAAAACAACATCAACCAGTTCAAAGAAGAAATCTGTGGCTAAAAATGAAAAAACGTCTCAAAAGCGTAA GAAGTCTAATGATGATTTAGAAAATACTACTAAAAAATCTCTGAAAAAGTTCTCTCATTCCACCCTACGAAGAAAACGAT GTGGTAAACTTGCTAAGACTATTTGTGTTTTTAACTTTTTTTTTGTTTTGTTTATTTTATCTTGTATGATTGTTATAAGT GTTTTCCTTTTATAGAGGATCTGCTGAAAACTCCTGAAGATGAATGGGATCCTCGAAATATGCCTATAAAGGATATTATT ATACTTGCAGAATATAAGGAGCGGTTGGCGGTGTGTATTCTCAATTTTAATCCCTGTATTACAATGCCCAACAATTGTTA GTATTGCATGATGGCTTAAGTTTTCACCAACTATTCTGTTCGTTTCTCTATGTAGAAAAAGGACCCAACAACTTCAAAAA CATCTTCCACCAATCAAAGGTACACTCAACTTTAGTAACATTGCATATCTAGATTTTATTTAATTTTCTGGTCCTGTTAA TCCTTGTCTAATATGAAAGTAGAATAAGTACACTGCAAAATCAATTAATTTGGAAAATTAACTGCTGTAAACATCTTATT TACTACAATTCTTTGTATTTTTTTACAATCTTATACTATTGAATTAAGTTATATCTGACAATGTATATAAACTTATTTGA TAAAGGAAATGCTTTTTATTCCTTCTCTTTTCTTTCCCTGGAGACAAGTGCATGTACTTGGACATAACCATCATATGGCT TAAGTTATTCTTCTCTCTTTTAACGATTCAATTACTTTCCTCCATCAAATTATCAAAATGGTCTGTAACTGAATGGAATG GATGTAATGCTGTCAATAAAGTGCATTGTTTTCACTTTTGCTGGCCTAAGTTGGGTTGAGGGCTGAGGCAGGAAGAGGGC TATAGATTTGATAGTGGTGCTTTTCCCTGCGTCCACAATGAGATGTAGTCAGTGCAATTTAGGGATACAAATTGAAGGTC CTTGTATTTTTGGTGTTCGTCAAGGCACTCATGCTTTTGGATCACTACTTCCTCTCAGTATTTTGAGAACAGAAATGTAT AGGGAAACATTATATATATATAAAATGCGCTCCATATTATCCACTAGCTATTGTCACTGTCACTTCGAAGTTCTATGTGG TGCAGTAAATAGATTTTAGTTTGCAAAATATTTGTGTGCAGTGGTGGAGATCCTTTTTATGAAGCCGGTGCCAATTACGA AGAGGGGTTCTTTGGCTCAGAAAACCCAAATGATAATCAAGACACTGAAAATGTTACAGACACTACCGCTTTAATTAATT ACCAGTCCTTCATGGACAAGGCACCTAGGGGAAAATGGTCAAAACAAGACACTGAACTGTTTTATGAGGTATCTGCATAA TTCTCACAAGATTTATGATGTTATTATTTCTCTTAAACACAGCTGCATACCTACCAATTATATCATTTGTGATTTGGGGA ATGGGAATGAGAGAAGGAGCAATCTTATTTAGTAAATTAACTAATTTTTTTTTAAACACAGGCTGTTAGGGAGTTTGGCA CAGATTTTTCTATGATTCAACAGCTTTTCCCTGATCGAACACGTCATCAAATTAAGTTGAAGTACAAGAAGGAAGAGCGG CAGCATCCTTTACAGTTATCCGATGCTGTGAATAGTCGTTCAAAAGGTTGAACTCTTTATTTACCATTCTGTATTGTTCT CAGACAGTGTTTACTCTTTAAGCAGAGTCCAGAAATGATCCTCAAGATTCATTTCTTTTGATGACTTATTCTTTACTTTA TCATGGCTAAAAATAAGTTTTTAATGGTTTACTGTTCTTCACATATACTCTTATGATTACTGAATATCTATTCTTTTCCT CTGCTAGATCTGTCTCATTTTAAAAAGGTGATTGAGCGGTTGCAACAAGCTTCTGACAAGGCTGAACAAGACGCCAATGA AGATGTTGAGGACCTAACACCTGAAACTAATGTATGCATTTTCTGCCCATTTAGTTTATCTTCTGATGCCTCCTTTCTTT TGGTGTACATAGTTCATGCTAATTTTCTTATAAATGCCATAATTATCAGATCACCAAGATAAATTGCCTTGATTATTTGT TCTCTCCTATTTTTTTCAATAGAAAATGATTAAATCCACATATTAGTAGCTTTCTGAAGTCTGAATAGTATATTATCCCC TAATTGGCTTTCAAAACTCATTTTATGCATGCAGGAGGAGGTTGCAACAACTGAGAAGGACACTGACGATGTTGAAACAA CTAAGCAGGACACCAATGTTAAAGATCAGGAAGATTCTGCAGCAATTCATGATCCAGAACAACCTGATAATGATGATGAT GATGAGGATTACTCTCAAATATGGTCTTATACAAGTGAATTTTGATGATTACTAGTAGTATTATGGTCCCATTGTGTTTT AATTTTTTTAATGTGAAATGTGATTGTTGTAACGTGAAATTCTTTTTATTACTGATTATTCACGAGATCACTTCTTTTGA TTTTTATAATCAAGGTCCTGGGCATTTATTTCCTATTTTTTTTCCAATCTTGGTTACTCATGATATGATTTTTTTCCAAT CTTGGTAGTTACAAAGAATATGATCCATGAAAAGCTATTCAAATAGCACCCTGGTAATTA
CDS sequence (LotjaGi2g1v0449800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTATAAAGGATATTATTATACTTGCAGAATATAAGGAGCGGTTGGCGAAAAAGGACCCAACAACTTCAAAAACATC TTCCACCAATCAAAGTGGTGGAGATCCTTTTTATGAAGCCGGTGCCAATTACGAAGAGGGGTTCTTTGGCTCAGAAAACC CAAATGATAATCAAGACACTGAAAATGTTACAGACACTACCGCTTTAATTAATTACCAGTCCTTCATGGACAAGGCACCT AGGGGAAAATGGTCAAAACAAGACACTGAACTGTTTTATGAGGCTGTTAGGGAGTTTGGCACAGATTTTTCTATGATTCA ACAGCTTTTCCCTGATCGAACACGTCATCAAATTAAGTTGAAGTACAAGAAGGAAGAGCGGCAGCATCCTTTACAGTTAT CCGATGCTGTGAATAGTCGTTCAAAAGATCTGTCTCATTTTAAAAAGGTGATTGAGCGGTTGCAACAAGCTTCTGACAAG GCTGAACAAGACGCCAATGAAGATGTTGAGGACCTAACACCTGAAACTAATGAGGAGGTTGCAACAACTGAGAAGGACAC TGACGATGTTGAAACAACTAAGCAGGACACCAATGTTAAAGATCAGGAAGATTCTGCAGCAATTCATGATCCAGAACAAC CTGATAATGATGATGATGATGAGGATTACTCTCAAATATGGTCTTATACAAGTGAATTTTGA
Protein sequence (LotjaGi2g1v0449800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPIKDIIILAEYKERLAKKDPTTSKTSSTNQSGGDPFYEAGANYEEGFFGSENPNDNQDTENVTDTTALINYQSFMDKAP RGKWSKQDTELFYEAVREFGTDFSMIQQLFPDRTRHQIKLKYKKEERQHPLQLSDAVNSRSKDLSHFKKVIERLQQASDK AEQDANEDVEDLTPETNEEVATTEKDTDDVETTKQDTNVKDQEDSAAIHDPEQPDNDDDDEDYSQIWSYTSEF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 223 | 223 | 8.2E-57 | – | |
| PANTHER | 1 | 223 | 223 | 8.2E-57 | – | |
| MobiDBLite | 18 | 39 | 22 | - | – | |
| MobiDBLite | 22 | 36 | 15 | - | – | |
| Pfam | 74 | 158 | 85 | 3.7E-29 | ||
| ProSiteProfiles | 79 | 127 | 49 | 10.062 | ||
| SMART | 80 | 128 | 49 | 3.2E-10 | ||
| SUPERFAMILY | 82 | 130 | 49 | 1.05E-11 | ||
| CDD | 83 | 124 | 42 | 1.98964E-8 | ||
| Gene3D | 84 | 167 | 84 | 1.1E-10 | – | |
| Coils | 144 | 171 | 28 | - | – | |
| MobiDBLite | 156 | 233 | 78 | - | – | |
| MobiDBLite | 178 | 212 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0449800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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