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LotjaGi3g1v0005200.2

Overview

Field Value
Gene ID LotjaGi3g1v0005200
Transcript ID LotjaGi3g1v0005200.2
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Plasma membrane ATPase; TAIR: AT1G80660.1 H -ATPase 9; Swiss-Prot: sp|Q7XPY2|PMA1_ORYSJ Plasma membrane ATPase; TrEMBL-Plants: tr|I1M5Y0|I1M5Y0_SOYBN Plasma membrane ATPase; Found in the gene: LotjaGi3g1v0005200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:640625..645661) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCGAACCTCGAAGATATCAAGAAGGAGACTGTTGATCTCGTTAGTATTGATGATTTTTTTCTTGTTTCTTTTTTAAT GAAATATTTTTTGTTGAATGTTATGTGAATCATTGCCATGCAACGTGCTTGATTTGTAGGAGCGAATACCCGTTGATGAA GTGTTCCGAGAATTGAATTGCACCAAGGAAGGTCTCACTAGCGATGAAGGTCAAAAGAGGTTGCAAGTTTTCGGGCCCAA CAAATTGGAAGAAAAGAAGGTAAAATCATCATCTTATGGATTCATTCATAAATAATCACTTGTTATACATATGTTATATA TTATAGCATTTTTGTATCAGCGTCTTTTTGAATTGATTTTGACTTTAAAACCATGCGCGGATTTTTTACTATTGATTTTG AAGCCGCCATGATCGATTTATTTGTGACCGGCTTCTAGGTTTTAAATTGATGATGAGAAAAAAAGGTGGTTTTAGACTTT ATAGGCTGTTAGTTCCAATTATGTAGCGTTGAGGATTTGATTTTCACTAACATTTTTTAATGTTTGTTAACAGGAAAGCA AGGTGCTCAAATTCTTGGGTTTCATGTGGAACCCTCTCTCATGGGTCATGGAAGCTGCTGCTATCATGGCTATTGCATTG GCGAATGGAGGGGTACGTTCTGTTCTGCATGGCATTATTGGCATATATTTGCTGATTATGGACAACACTAAATATTTTGC TCACCTAGTTTTTGTCATTCTCTTGTCTAATTCTCCATCTTTTGAAACATGCAGGGTGAGCCACCGGATTGGCAAGACTT TGTGGGAATTATGGTGTTGCTAGTTGTCAACTCAACAATCAGTTTCATAGAAGAAAACAATGCAGGCAATGCTGCAGCAG CCCTTATGGCTGGTCTTGCGCCCAAAACCAAGGTATAATAATCTAACTAGTGTGTGTTTAAATACCAATTGAGTGCACTT TGAACAGATTATATCCCAATTCAAAAGAACTTCACATTTTGTCTTAAAGTGAGTGCTGCAGCTAACATTTGTTTGCTGAT AGATATCCAAAATAGCCATAGTAGTCATCAAAGTCTTATCTATGTGTTGTTATTTGTTAGCTAGCTTCTAGTATTTGGAT GGTAATGCAGCTTCACTGTAATGTGTATAGTATAGTACTTAATGTTTTAACATGCATATGTTCTGTTTGAACAATTGACA GGTTCTGAGAGATGGAAGGTGGACTGAGCAGGAGGCTGCTATATTGGTACCTGGAGATATAATCAGTATGAAATTAGGAG ATATCGTTCCAGCTGATGCTCGTCTTTTAGAAGGAGATCCCCTCAAGATTGATCAATCTGCACTCACGGGTGAGTCCTTG CCTGTTACTAAGAACTCTGGTGATGAAGTCTTCTCTGGTTCCACAGTAAAACAAGGAGAAATTGAGGCTGTTGTGATAGC TACTGGGGTGCACACCTTCTTTGGTAAAGCTGCACACTTGGTAGATAGCACTAACCAAGTTGGCCATTTCCAAAAGGTAC TACTATTATCAGCTATCTCTTTGTTCTTTGAGTTACATACTATTTGTCTCTTCACTAATGTGCATTTTGATGGTTATGAT CAGGTGCTGACAGCTATTGGTAACTTCTGCATTTGCTCAATTGCTGTGGGAATGATCATAGAGCTTGTTGTCATGTACCC AATCCAGCACCGCAAGTATAGGAGTGGAATCAACAATCTCTTGGTGCTCCTCATTGGTGGGATTCCTATTGCCATGCCAA CAGTCTTGTCAGTAACAATGGCTATTGGTTCCCACAGGCTGTCCCAGCAAGGTGCAATCACAAAGAGAATGACAGCCATT GAGGAGATGGCTGGGATGGATGTGTTGTGCAGTGACAAGACTGGCACTCTTACACTGAACAAGCTTACTGTGGACAAGAA TTTGGTAGAGGTAAGGGGATCCAAGACAGACAATTCATTAAAAGTTTACTTGTGTTGGAACATCAATTTAATGTCATTTG TTTTTCAGATTTACTAATCATGGAACCAATTTCTCCACATTGCAGGTTTTTTGCAAAGATGCTGACAAGGACACAGTAAT TCTGCTTGGAGCTAGGGCCTCTAGGGTTGAGAACCAAGATGCTATTGATGCTTGCATTGTTGGAATGTTGGGAGATCCAA AAGAGGTTTGTAATTTCTTCCACATGATTTCTTGTCCTGGTGGTTTCCTACACGAATAAGCCAGATTCTACATGCTTGAA ATCTTTGAACAAAGAAAAAAAAATTCACATTAATAAAGTTCTCTTGCTAGCCTAGTGAATGACTCTTGGGGTAACCTTGT AAAATATGCTAAGGTGCTTCTTTAGACATGCATATGAAACTTTTGATTACCATGACCATAGGTGATTCACTGATTTGATA AGATTATAACTATAATGACACACTTTTCATGCTTACTACAGGCTAGAGAAGGTATTGAAGAGGTGCATTTCTTACCCTTC AATCCAGTGGACAAGCGTACAGCCATAACATACATAGACCATCTGGGAGATTGGCACCGAGTGAGCAAAGGGGCACCAGA GCAGGTAAATCGATCTTTCAATGCACTACACATAATTGATGTCTCCTGTTTCCTTTAACAATGTAACTCATATTGAATTT CTTGCTAGATTATCGAACTCTGCAAGGTTAGAGAAGATGTGAAGAACAAAGCCCTTTCCATTATTGATAAGTTTGCTGAT CGCGGTCTTCGTTCGCTTGCTGTTGCCAAACAAGTGAGTTATGGTCCTTAGTAGTAGTACATGCCTACCCCCCAACAAAT AATTGCTCATACATGGTTTGAATAAGTTTTGTGACAAACTATACATGCTTTCAGGAAGTGCCAGAAAAGAGCAAGGAGAG TCCAGGAGCACCATGGGTGTTTGTGGGTCTTTTGCCTCTCTTTGACCCACCTAGGCATGACAGTGCAGAAACCATCCAAC GCGCTCTTCACCTAGGAGTGAATGTCAAGATGATTACTGGTGATCAACTAGCTATCGGCAAGGAAACTGGTCGCAGGCTT GGCATGGGAAGTAACATGTACCCTTCATCCTCCCTCCTTGGTGAGCACAAGGATGCGTCTATTGCTGCTCTTCCAATTGA TGAGCTTATTGAGAAGGCTGATGGCTTTGCTGGTGTTTTCCCTGGTAAATTACTACTTTCTTACAAACTTGTACTTGAAA ATCAATTTTTTTTACTAGAATTATGAAGGCAACAATCATCGAACTCTAGACCACTTAGTCATAGATGCTATGATATTATG TCATGAACTAACTATCCAAAAAGTTTAAGTAATTAGTTGATCACACATGGATGATTTTATATTTTATTTCTAACATTCTT CACCTTACTAATTGATGTGAGTCTGAATCTTGTCCTTTTGTCCAATCCAGAACATAAATATGAGATTGTTAAGAGGCTTC AGGACAGGAAGCACATATGTGGGATGACTGGGGATGGTGTCAACGATGCTCCAGCCTTGAAAAGAGCAGATATTGGAATT GCAGTGGCTGATGCAACCGATGCAGCGCGAGGTGCATCTGATATAGTCCTCACGGAGCCTGGTTTGAGTGTCATTGTGAG CGCAGTGTTGACAAGCAGAGCCATCTTTCAGAGAATGAAGAACTACACCATATATGCTGTTTCCATAACAATCCGAATCG TGCTAGGCTTTATGCTCCTTGCACTCATCTGGAAGTTTGATTTCTCACCTTTTATGGTTCTGATCATTGCCATACTAAAT GACGGGACGATCATGACAATTTCCAAGGATAGGGTGAAGCCATCTCCTCTTCCGGATTCATGGAAGCTGAATGAGATCTT TGCCACCGGCATAGTGCTTGGTGCCTACCTTGCTGTTATGACTGTTGTCTTCTTCTGGCTTGCTCATGCATCTAATTTCT TCTCAGTAAGATGGAGATTTCAAAATCATATATCGGTTGGAACATGATTTCAGACATAACTCACATGCTAAAATGTTGTT TGCAGGACAAATTTGGAGTGAGATCAATCAGGGATAGCCACAATGAGCTCACAGCAGCTATTTACCTTCAAGTGAGTACT GTAAGTCAGGCTCTCATCTTTGTCACACGTTCAAGGAGTTGGTCTTATGTTGAACGTCCGGGCGCCCTTCTCATGGTCGC CTTTCTGGCAGCACAACTGGTGAGTTATGATGACATGAATAGGCAAATGTTAGTTGTTAATAATGTTAGTCAATTAATCA CTCATCAGGGTTCGAACCCTGGACCCTTCACCCTTATCCCACTTTCTGATTTAGTCTTGTGTGTCAAACAAATTACTTAT AGTTTGTATTTCTTTTCATGAATAACTTGTTAGGTTGCCACACTCATTGCTGTGTATGCAAACTGGGGCTTTGCTGATAT GAAAGGAATTGGATGGGGTTGGGCTGGTGTCATTTGGCTCTACAGCATTGTTTTCTACATCCCCTTGGACATCCTTAAAT TCATCATAAGATATGCATTGAGTGGAAAAGCATGGAGTAACATTACTGAGAACAGGGTAAAATCTCAATCTCAAAATTCT AAATATCACACTGTTAGTGTTATCTACTAAACAGAACCATATGGATGCAAAATATGTGACCATTTTATTTTCTGTGCTGT GATGCAGGTTGCTTTCACCTCAAAGAAGGATTATGGAAAGGGAGAGAGAGAAGCACAATGGGCTGCAGCTCAACGCACAC TGCATGGTCTCAACCCTCCTGAAACTGAGACTATGATGAATGAGAAGAACAACTATAGGGAACTTTCTGAACTTGCAGAA CAGGCCAAGAAACGTGCTGAAGTTGCAAGGTATTGTCCGTCCAGAATTTGAGCCGAGCGGAACCACAATGTTCATTGAAA TGCTTACTAATTTAAAGGTAAATCCAATCCAATGTGCCTCATTTGGTTTACACTTTGCAGGTTGAGGGAGCTTCACACGC TTAAGGGGCACGTTGAGTCTGTTGTGAAGCTCAAGGGGCTTGACATTGAGACAATTCAGCAGCACTACACTGTTTGA 

CDS sequence (LotjaGi3g1v0005200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGAACCTCGAAGATATCAAGAAGGAGACTGTTGATCTCGAGCGAATACCCGTTGATGAAGTGTTCCGAGAATTGAA TTGCACCAAGGAAGGTCTCACTAGCGATGAAGGTCAAAAGAGGTTGCAAGAAAGCAAGGTGCTCAAATTCTTGGGTTTCA TGTGGAACCCTCTCTCATGGGTCATGGAAGCTGCTGCTATCATGGCTATTGCATTGGCGAATGGAGGGGGTGAGCCACCG GATTGGCAAGACTTTGTGGGAATTATGGTGTTGCTAGTTGTCAACTCAACAATCAGTTTCATAGAAGAAAACAATGCAGG CAATGCTGCAGCAGCCCTTATGGCTGGTCTTGCGCCCAAAACCAAGGTTCTGAGAGATGGAAGGTGGACTGAGCAGGAGG CTGCTATATTGGTACCTGGAGATATAATCAGTATGAAATTAGGAGATATCGTTCCAGCTGATGCTCGTCTTTTAGAAGGA GATCCCCTCAAGATTGATCAATCTGCACTCACGGGTGAGTCCTTGCCTGTTACTAAGAACTCTGGTGATGAAGTCTTCTC TGGTTCCACAGTAAAACAAGGAGAAATTGAGGCTGTTGTGATAGCTACTGGGGTGCACACCTTCTTTGGTAAAGCTGCAC ACTTGGTAGATAGCACTAACCAAGTTGGCCATTTCCAAAAGGTGCTGACAGCTATTGGTAACTTCTGCATTTGCTCAATT GCTGTGGGAATGATCATAGAGCTTGTTGTCATGTACCCAATCCAGCACCGCAAGTATAGGAGTGGAATCAACAATCTCTT GGTGCTCCTCATTGGTGGGATTCCTATTGCCATGCCAACAGTCTTGTCAGTAACAATGGCTATTGGTTCCCACAGGCTGT CCCAGCAAGGTGCAATCACAAAGAGAATGACAGCCATTGAGGAGATGGCTGGGATGGATGTGTTGTGCAGTGACAAGACT GGCACTCTTACACTGAACAAGCTTACTGTGGACAAGAATTTGGTAGAGGTTTTTTGCAAAGATGCTGACAAGGACACAGT AATTCTGCTTGGAGCTAGGGCCTCTAGGGTTGAGAACCAAGATGCTATTGATGCTTGCATTGTTGGAATGTTGGGAGATC CAAAAGAGGCTAGAGAAGGTATTGAAGAGGTGCATTTCTTACCCTTCAATCCAGTGGACAAGCGTACAGCCATAACATAC ATAGACCATCTGGGAGATTGGCACCGAGTGAGCAAAGGGGCACCAGAGCAGATTATCGAACTCTGCAAGGTTAGAGAAGA TGTGAAGAACAAAGCCCTTTCCATTATTGATAAGTTTGCTGATCGCGGTCTTCGTTCGCTTGCTGTTGCCAAACAAGAAG TGCCAGAAAAGAGCAAGGAGAGTCCAGGAGCACCATGGGTGTTTGTGGGTCTTTTGCCTCTCTTTGACCCACCTAGGCAT GACAGTGCAGAAACCATCCAACGCGCTCTTCACCTAGGAGTGAATGTCAAGATGATTACTGGTGATCAACTAGCTATCGG CAAGGAAACTGGTCGCAGGCTTGGCATGGGAAGTAACATGTACCCTTCATCCTCCCTCCTTGGTGAGCACAAGGATGCGT CTATTGCTGCTCTTCCAATTGATGAGCTTATTGAGAAGGCTGATGGCTTTGCTGGTGTTTTCCCTGAACATAAATATGAG ATTGTTAAGAGGCTTCAGGACAGGAAGCACATATGTGGGATGACTGGGGATGGTGTCAACGATGCTCCAGCCTTGAAAAG AGCAGATATTGGAATTGCAGTGGCTGATGCAACCGATGCAGCGCGAGGTGCATCTGATATAGTCCTCACGGAGCCTGGTT TGAGTGTCATTGTGAGCGCAGTGTTGACAAGCAGAGCCATCTTTCAGAGAATGAAGAACTACACCATATATGCTGTTTCC ATAACAATCCGAATCGTGCTAGGCTTTATGCTCCTTGCACTCATCTGGAAGTTTGATTTCTCACCTTTTATGGTTCTGAT CATTGCCATACTAAATGACGGGACGATCATGACAATTTCCAAGGATAGGGTGAAGCCATCTCCTCTTCCGGATTCATGGA AGCTGAATGAGATCTTTGCCACCGGCATAGTGCTTGGTGCCTACCTTGCTGTTATGACTGTTGTCTTCTTCTGGCTTGCT CATGCATCTAATTTCTTCTCAGACAAATTTGGAGTGAGATCAATCAGGGATAGCCACAATGAGCTCACAGCAGCTATTTA CCTTCAAGTGAGTACTGTAAGTCAGGCTCTCATCTTTGTCACACGTTCAAGGAGTTGGTCTTATGTTGAACGTCCGGGCG CCCTTCTCATGGTCGCCTTTCTGGCAGCACAACTGGTTGCCACACTCATTGCTGTGTATGCAAACTGGGGCTTTGCTGAT ATGAAAGGAATTGGATGGGGTTGGGCTGGTGTCATTTGGCTCTACAGCATTGTTTTCTACATCCCCTTGGACATCCTTAA ATTCATCATAAGATATGCATTGAGTGGAAAAGCATGGAGTAACATTACTGAGAACAGGGTTGCTTTCACCTCAAAGAAGG ATTATGGAAAGGGAGAGAGAGAAGCACAATGGGCTGCAGCTCAACGCACACTGCATGGTCTCAACCCTCCTGAAACTGAG ACTATGATGAATGAGAAGAACAACTATAGGGAACTTTCTGAACTTGCAGAACAGGCCAAGAAACGTGCTGAAGTTGCAAG GTTGAGGGAGCTTCACACGCTTAAGGGGCACGTTGAGTCTGTTGTGAAGCTCAAGGGGCTTGACATTGAGACAATTCAGC AGCACTACACTGTTTGA 

Protein sequence (LotjaGi3g1v0005200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MANLEDIKKETVDLERIPVDEVFRELNCTKEGLTSDEGQKRLQESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGEPP DWQDFVGIMVLLVVNSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWTEQEAAILVPGDIISMKLGDIVPADARLLEG DPLKIDQSALTGESLPVTKNSGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSI AVGMIIELVVMYPIQHRKYRSGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKT GTLTLNKLTVDKNLVEVFCKDADKDTVILLGARASRVENQDAIDACIVGMLGDPKEAREGIEEVHFLPFNPVDKRTAITY IDHLGDWHRVSKGAPEQIIELCKVREDVKNKALSIIDKFADRGLRSLAVAKQEVPEKSKESPGAPWVFVGLLPLFDPPRH DSAETIQRALHLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGEHKDASIAALPIDELIEKADGFAGVFPEHKYE IVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVS ITIRIVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLNEIFATGIVLGAYLAVMTVVFFWLA HASNFFSDKFGVRSIRDSHNELTAAIYLQVSTVSQALIFVTRSRSWSYVERPGALLMVAFLAAQLVATLIAVYANWGFAD MKGIGWGWAGVIWLYSIVFYIPLDILKFIIRYALSGKAWSNITENRVAFTSKKDYGKGEREAQWAAAQRTLHGLNPPETE TMMNEKNNYRELSELAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 49 49 -
PANTHER 3 918 916 0.0
PANTHER 3 918 916 0.0
SUPERFAMILY 13 834 822 7.85E-83
SMART 13 74 62 1.3E-6
CDD 32 828 797 0.0
TIGRFAM 43 793 751 0.0
TMHMM 50 72 23 -
Phobius 50 73 24 -
Gene3D 51 145 95 1.1E-31
Phobius 74 84 11 -
TMHMM 82 101 20 -
Phobius 85 101 17 -
TIGRFAM 88 345 258 5.0E-39
Phobius 102 227 126 -
Pfam 118 295 178 7.9E-49
SUPERFAMILY 119 216 98 1.14E-28
PRINTS 166 180 15 5.1E-42
Gene3D 168 329 162 3.0E-16
Phobius 228 254 27 -
TMHMM 229 251 23 -
Phobius 255 265 11 -
Phobius 266 288 23 -
TMHMM 266 288 23 -
Phobius 289 633 345 -
SFLD 298 627 330 0.0
SFLD 298 627 330 0.0
SUPERFAMILY 312 622 311 3.38E-37
Pfam 312 589 278 2.3E-15
PRINTS 316 330 15 5.1E-42
ProSitePatterns 318 324 7 -
Gene3D 330 475 146 2.1E-44
PRINTS 432 450 19 3.8E-57
PRINTS 470 481 12 5.1E-42
PRINTS 492 502 11 5.1E-42
Gene3D 530 833 304 3.7E-112
PRINTS 547 563 17 3.8E-57
TIGRFAM 550 660 111 1.2E-27
PRINTS 575 594 20 5.1E-42
PRINTS 575 591 17 3.8E-57
PRINTS 598 610 13 5.1E-42
PRINTS 606 631 26 3.8E-57
TMHMM 634 656 23 -
Phobius 634 656 23 -
Phobius 657 661 5 -
Phobius 662 679 18 -
Phobius 680 698 19 -
TMHMM 698 720 23 -
Phobius 699 722 24 -
Phobius 723 741 19 -
Phobius 742 761 20 -
PRINTS 747 768 22 3.8E-57
Phobius 762 772 11 -
TMHMM 772 794 23 -
Phobius 773 794 22 -
Phobius 795 805 11 -
TMHMM 804 823 20 -
Phobius 806 830 25 -
Phobius 831 938 108 -
Coils 882 909 28 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Molecular function Proton-exporting ATPase activity, phosphorylative mechanism Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) -> ADP + phosphate + H+(out). These transporters use a phosphorylative mechanism, which have a phosphorylated intermediate state during the ion transport cycle.
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Biological process Proton export across plasma membrane The directed movement of hydrogen ions (protons) from inside a cell, across the plasma membrane and into the extracellular region.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0005200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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