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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0019300 |
| Transcript ID | LotjaGi3g1v0019300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat protein; TAIR: AT3G50390.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|O48716|JGB_ARATH Protein JINGUBANG; TrEMBL-Plants: tr|V7C039|V7C039_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0019300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2023192..2026116) extracted from Lotus japonicus Gifu genome v1.2.
ACTCACTTCTAGTCATAACATTAACACCACATCATCACACCACAACATCTTTCTTTTGATGATCAATGGACTCTTCTAAC TCACCTGATCCCACCCCATCTTTTGCTTTTAGATCCACAACTCAGAACAACTTCTTGAGAAGCCGTTCCACAAAAGAAAC CCCTTACTCAAACTTTCTCCATTCCCCACCTCGCCTCTCTTGTCCTACTCTCTCTCGCAGCCTTCAAAGTTCTCCTCTTC ATCCCCATCATCACACTGCCACCACCACCAAAGTTTCTTCTGATAGTCTTTCTGACCCTCAAACAACCTACCACTGTGCC TCTTCTGTGCTCAGAAACGATGGTCAGGTTCTGTCCATAGCATTGTCATCAAATAATGGATTTGTCTACACTGGCTCTGA CTCCAATCTTGTGAGGGTATGGAAGCTCCCTGAGTTCACTGAATTTGGACAATTGAGGACTAAAGCTTGCAGGGTGGTGG CATTGGAAGTGTCCAATGACACTGTTTATGCAGCCTATGGTGATGGCAAGATTCGGACGTGGACAAGAACTTGGGATAAG GTGTTGAAGCATGTGAGGTTGGCTACCATCCCAAAGAAAGTTGGCTATGTAAGGAGCTATATTGGTGGAAAAGACAAGGC TGTAAGTATACATGTTAGATTTTGTAACTGCTAACTAGGGGAGAATTTCTTACATGGCTTTTGATCTGTCCTAGAATGTG TACTATTCTCTCCAAACTCCAAGGGTTAGACTCAGTGACAAGCACACAACCTCCCAACATTAGCGTTAGAGTGAAGTTGA TTTAACCTTTGTTATGTTAGGCCTTTTATAGGCTTAAGAGTACCTCTTTGGGCTTTTAGCTGTTTTTGAGTTATGTTTAT CATTAAATAGAATAATGATTGGTTAATGACAATGGGGTCAGCTACTTAATCAAGGGGTTACTTGCGCATTCTTTTTAAAC CGTACTTCATGTTTGTTGAAGTAGCGTAAATGTCATCCTTTAGATCGGGTTACCATAAGTGGTAGCTCGGTCGACACACA ATCCTCCAAGCCCTTTAAGTCTTGTGTTTATTGGGCTTGAAGTGTGCCTCACTACTTAGGCTAGGCTACCATGGGCGGTA GCTTGGTAGACACACTAATTTCATAAACTAAAAATAGGAAGAGATAGGACAATGTACACATATTTTTATTATGCTTAGTG CTTTACATAGTTCACATTTATAACCAACACTTTAATTTGCACTATCTTGATTGTTTCCTTCCATCACTTAAACAGATGAA GCATAAGGGGCTGATCACATCAATGGCAATTAACACAGCAGAGGACATTCTATACACAGCTTCCCTAGACAAGACAGTGA AAGTGTGGCGAATCTCAGACCTGAAGTGCACAGAGACAATCAAAGCTCACACTGAGCCAATCAATGCCATCATAGCAGCA GATGATGGAGTTCTCTACACTGCCTCAGATGATGCCACAGTTAGAGTTTGGCGCAGAAACTTCTGCAGCCATGACCAACC ACACTCACTTACAGTGACCCTGCATGCCAAATATTCTCCTGTGAAGGCCTTGACACTGACCCCAGATGGAGGAGGGGTTT TGTATGGTGGGTGCAGTGATGGGTACATACACTACTGGCTAAAGGGTTGGTTTGCAGGTACAGGTTGATAGGAAATGAGG CATTTGTTTCTTGAATAGAAATTTTTTGTTTAGTAAAATAGTATTTAAGTGTGTCTGTGTCTGGAACCTCACAATCAATT CTGTCTGAGTAAAACCATTTTCGGATAACAATTGGTTGAAAGTTATCTAGAAAATTAAATGCATATGTTTATATATACAA CAGAAAACATGATAAATCTAAAATCACATTTAACATGATTTAAATAACTTTCTTTAACTTTTGCAACTGACCATCATGAT TTTGGGTTCATTGTGATTTTTTAACGTGTATCTAAACATGTTGGTTCACTCCTAACAATTTTGATAGAAGTTAGAAAGAG TAACTTATGAGTTGAATACAATCAATTATACAAGAGAATTTTATAATATTACTTTCCAAAGTCACATTTTCCATAAATAT ATTCAAACACAAATTATTCTATTCCCAGCTCACATTTATCGTAATCAATTTTAAAAAGAACAAATTTATTCAAAATCATT TGTCACAACACTGAATCACTGATCAAACACACTAAATATTATATTTGACCCTAAAAAAAAATTATACTGCTAAAAATTTA TATTGTTTTCTCCAACTAATTACTATTAATTTTGATTAATATGTTAAAACTGCACCCCTTTACTAATTTTTTCAGTTTCC ATTTTGCAGGCCAATTGCAATATGGTGGGTCAATCCAAGGGCACACACATGCAGTGATGTGCCTAGCTAGCGTGTCAAGG TTTGTGGTTAGTGGGTCAGCTGATTCAACAAGCAGGGTTTGGGGTAGAGAACAAGATGGGCAACACACATGTCTAGCAGT TCTTGTTGGTCACAGAGGGCCTATTAGGTGTGTGTCAGCTTTCATAGGAGGAACTAGGTTGGTGGAAGATAATGAAGATA GTTGCACTGTTTGCACTGGAAGCCTTGATGGGGTCCTGAAGCTTTGGCGTGTCTCACATACCAATAATCAGTGCTCATCC CAAGCAGGGGTCAAGTACTTTGAACACTACAAGGGGCTTCAATGAACACAAGTACAGAACACTAGTTTTTGTTTGCATTC TTCATCAATCTGTTTAAAAATATTTTTTCTTTTCAGAACTAAGTCAACTAACATCTAACCCTAATAAGTGCTCAATTGAT TCTTAGAAGTACTAACTTCTAGATTTTAAAATTGATTTTGATAAAAGAGAAATCGATTGTTTTGGAGGACACAAGTCGGA ACTCTAGAAAAAACATATATTAAAAAGAACTACCATAGTTTTCCA
CDS sequence (LotjaGi3g1v0019300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCTTCTAACTCACCTGATCCCACCCCATCTTTTGCTTTTAGATCCACAACTCAGAACAACTTCTTGAGAAGCCG TTCCACAAAAGAAACCCCTTACTCAAACTTTCTCCATTCCCCACCTCGCCTCTCTTGTCCTACTCTCTCTCGCAGCCTTC AAAGTTCTCCTCTTCATCCCCATCATCACACTGCCACCACCACCAAAGTTTCTTCTGATAGTCTTTCTGACCCTCAAACA ACCTACCACTGTGCCTCTTCTGTGCTCAGAAACGATGGTCAGGTTCTGTCCATAGCATTGTCATCAAATAATGGATTTGT CTACACTGGCTCTGACTCCAATCTTGTGAGGGTATGGAAGCTCCCTGAGTTCACTGAATTTGGACAATTGAGGACTAAAG CTTGCAGGGTGGTGGCATTGGAAGTGTCCAATGACACTGTTTATGCAGCCTATGGTGATGGCAAGATTCGGACGTGGACA AGAACTTGGGATAAGGTGTTGAAGCATGTGAGGTTGGCTACCATCCCAAAGAAAGTTGGCTATGTAAGGAGCTATATTGG TGGAAAAGACAAGGCTATGAAGCATAAGGGGCTGATCACATCAATGGCAATTAACACAGCAGAGGACATTCTATACACAG CTTCCCTAGACAAGACAGTGAAAGTGTGGCGAATCTCAGACCTGAAGTGCACAGAGACAATCAAAGCTCACACTGAGCCA ATCAATGCCATCATAGCAGCAGATGATGGAGTTCTCTACACTGCCTCAGATGATGCCACAGTTAGAGTTTGGCGCAGAAA CTTCTGCAGCCATGACCAACCACACTCACTTACAGTGACCCTGCATGCCAAATATTCTCCTGTGAAGGCCTTGACACTGA CCCCAGATGGAGGAGGGGTTTTGTATGGTGGGTGCAGTGATGGGTACATACACTACTGGCTAAAGGGTTGGTTTGCAGGC CAATTGCAATATGGTGGGTCAATCCAAGGGCACACACATGCAGTGATGTGCCTAGCTAGCGTGTCAAGGTTTGTGGTTAG TGGGTCAGCTGATTCAACAAGCAGGGTTTGGGGTAGAGAACAAGATGGGCAACACACATGTCTAGCAGTTCTTGTTGGTC ACAGAGGGCCTATTAGGTGTGTGTCAGCTTTCATAGGAGGAACTAGGTTGGTGGAAGATAATGAAGATAGTTGCACTGTT TGCACTGGAAGCCTTGATGGGGTCCTGAAGCTTTGGCGTGTCTCACATACCAATAATCAGTGCTCATCCCAAGCAGGGGT CAAGTACTTTGAACACTACAAGGGGCTTCAATGA
Protein sequence (LotjaGi3g1v0019300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSSNSPDPTPSFAFRSTTQNNFLRSRSTKETPYSNFLHSPPRLSCPTLSRSLQSSPLHPHHHTATTTKVSSDSLSDPQT TYHCASSVLRNDGQVLSIALSSNNGFVYTGSDSNLVRVWKLPEFTEFGQLRTKACRVVALEVSNDTVYAAYGDGKIRTWT RTWDKVLKHVRLATIPKKVGYVRSYIGGKDKAMKHKGLITSMAINTAEDILYTASLDKTVKVWRISDLKCTETIKAHTEP INAIIAADDGVLYTASDDATVRVWRRNFCSHDQPHSLTVTLHAKYSPVKALTLTPDGGGVLYGGCSDGYIHYWLKGWFAG QLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRCVSAFIGGTRLVEDNEDSCTV CTGSLDGVLKLWRVSHTNNQCSSQAGVKYFEHYKGLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 77 | 77 | - | – | |
| PANTHER | 4 | 420 | 417 | 4.1E-194 | – | |
| PANTHER | 4 | 420 | 417 | 4.1E-194 | – | |
| Gene3D | 61 | 179 | 119 | 2.5E-9 | ||
| SMART | 81 | 120 | 40 | 0.014 | ||
| SUPERFAMILY | 83 | 416 | 334 | 3.16E-46 | ||
| ProSiteProfiles | 88 | 121 | 34 | 8.938 | ||
| ProSiteProfiles | 88 | 422 | 335 | 25.839 | ||
| Pfam | 92 | 120 | 29 | 0.15 | ||
| SMART | 123 | 160 | 38 | 95.0 | ||
| SMART | 186 | 224 | 39 | 0.01 | ||
| Pfam | 189 | 266 | 78 | 6.5E-6 | – | |
| Gene3D | 190 | 315 | 126 | 5.9E-23 | ||
| ProSiteProfiles | 192 | 233 | 42 | 11.678 | ||
| PRINTS | 211 | 225 | 15 | 6.9E-5 | ||
| SMART | 227 | 265 | 39 | 3.2E-6 | ||
| ProSiteProfiles | 234 | 264 | 31 | 10.007 | ||
| SMART | 274 | 314 | 41 | 0.6 | ||
| SMART | 321 | 358 | 38 | 0.15 | ||
| Gene3D | 325 | 435 | 111 | 1.9E-14 | ||
| Pfam | 326 | 357 | 32 | 0.11 | ||
| ProSiteProfiles | 328 | 357 | 30 | 9.406 | ||
| PRINTS | 345 | 359 | 15 | 6.9E-5 | ||
| SMART | 364 | 413 | 50 | 0.0022 | ||
| Pfam | 366 | 412 | 47 | 0.0011 | ||
| PRINTS | 400 | 414 | 15 | 6.9E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0019300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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