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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR22844
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 53 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.029s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0006089.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 48-like [Cicer arietinum] gi|502165775|ref|XP_004513686.1| chr0 2290103 2296009 -
1 domain prediction
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Lj0g3v0006099.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 48-like [Glycine max] gi|356530911|ref|XP_003534022.1| chr0 2295956 2296783 -
1 domain prediction
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Lj0g3v0096849.1
n.a. Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 [Medicago truncatula] gi|357438041|ref|XP_003589296.1| chr0 40873446 40876108 -
1 domain prediction
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Lj0g3v0204799.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 48-like [Glycine max] gi|356556342|ref|XP_003546485.1| chr0 101739836 101740440 +
1 domain prediction
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Lj0g3v0260259.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 48-like [Cicer arietinum] gi|502157475|ref|XP_004510889.1| chr0 135216097 135217608 -
1 domain prediction
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Lj0g3v0297489.1
n.a. PREDICTED: F-box protein At4g00755-like [Glycine max] gi|356530898|ref|XP_003534016.1| chr0 154657397 154663840 -
1 domain prediction
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Lj0g3v0363439.1
n.a. PREDICTED: myosin heavy chain kinase B-like [Glycine max] gi|356529844|ref|XP_003533497.1| chr0 191717545 191718096 -
1 domain prediction
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Lj0g3v0363449.1
n.a. PREDICTED: myosin heavy chain kinase B-like [Glycine max] gi|356529844|ref|XP_003533497.1| chr0 191718048 191718851 -
1 domain prediction
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Lj1g3v0415560.1
n.a. PREDICTED: F-box/WD repeat-containing protein sel-10-like [Glycine max] gi|356516706|ref|XP_003527034.1| chr1 5398611 5401238 -
1 domain prediction
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Lj1g3v0874380.1
n.a. PREDICTED: LOW QUALITY PROTEIN: protein translocase subunit SECA2, chloroplastic-like [Fragaria vesca subsp]. vesca] gi|470113007|ref|XP_004292719.1| chr1 11233272 11237661 +
1 domain prediction
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Lj1g3v1733530.1
n.a. PREDICTED: cirhin-like isoform 1 [Glycine max] gi|356552266|ref|XP_003544489.1| chr1 20433286 20440115 -
1 domain prediction
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Lj1g3v2065470.1
n.a. n.a. chr1 24394140 24395881 +
1 domain prediction
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Lj1g3v2065480.1
n.a. PREDICTED: lissencephaly-1 homolog [Glycine max] gi|356518336|ref|XP_003527835.1| chr1 24394292 24396488 -
1 domain prediction
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Lj1g3v2612700.1
n.a. cyclin-like F-box [Phaseolus vulgaris] gi|353685486|gb|AER13163.1| chr1 30341624 30346515 +
1 domain prediction
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Lj2g3v1034670.2
n.a. PREDICTED: pleiotropic regulator 1-like [Glycine max] gi|356550956|ref|XP_003543846.1| chr2 16571967 16578957 -
1 domain prediction
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Lj2g3v1368200.1
n.a. PREDICTED: probable cytosolic iron-sulfur protein assembly protein 1-like [Cicer arietinum] gi|502141265|ref|XP_004504504.1| chr2 21518237 21520189 +
1 domain prediction
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Lj2g3v1828850.1
n.a. Guanine nucleotide-binding protein subunit beta-like protein [Medicago truncatula] gi|357483119|ref|XP_003611846.1| chr2 27618687 27620555 -
1 domain prediction
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Lj2g3v2959630.1
n.a. PREDICTED: F-box/WD-40 repeat-containing protein At5g21040-like [Glycine max] gi|356501332|ref|XP_003519479.1| chr2 38342441 38344747 +
1 domain prediction
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Lj3g3v0258380.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 17-like [Glycine max] gi|356557285|ref|XP_003546948.1| chr3 1554955 1556461 +
1 domain prediction
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Lj3g3v0258390.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 17-like [Glycine max] gi|356557285|ref|XP_003546948.1| chr3 1554955 1556469 +
1 domain prediction
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Lj3g3v0260450.1
n.a. WD repeat-containing protein [Medicago truncatula] gi|357454851|ref|XP_003597706.1| chr3 1573348 1574610 -
1 domain prediction
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Lj3g3v0260460.1
n.a. WD repeat-containing protein [Medicago truncatula] gi|357454851|ref|XP_003597706.1| chr3 1573348 1576711 -
1 domain prediction
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Lj3g3v0260470.1
n.a. WD repeat-containing protein [Medicago truncatula] gi|357454851|ref|XP_003597706.1| chr3 1575226 1575643 -
1 domain prediction
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Lj3g3v3337440.1
n.a. PREDICTED: vegetative incompatibility protein HET-E-1-like [Vitis vinifera] gi|225428610|ref|XP_002281238.1| chr3 40717809 40723485 -
1 domain prediction
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Lj3g3v3337450.1
n.a. PREDICTED: vegetative incompatibility protein HET-E-1-like [Vitis vinifera] gi|225428610|ref|XP_002281238.1| chr3 40718177 40723485 -
1 domain prediction
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Lj3g3v3640300.1
n.a. PREDICTED: myosin heavy chain kinase B-like [Glycine max] gi|356529844|ref|XP_003533497.1| chr3 44463301 44465078 +
1 domain prediction
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Lj4g3v1410010.1
n.a. PREDICTED: myosin heavy chain kinase B-like [Glycine max] gi|356565258|ref|XP_003550859.1| chr4 22089020 22091240 +
1 domain prediction
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Lj4g3v1560510.1
n.a. WD repeat-containing protein [Medicago truncatula] gi|357477279|ref|XP_003608925.1| chr4 23189631 23192082 +
1 domain prediction
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Lj4g3v1560520.1
n.a. n.a. chr4 23190503 23192972 -
1 domain prediction
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Lj4g3v2172780.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 30-like [Cicer arietinum] gi|502151023|ref|XP_004508240.1| chr4 29936379 29941269 -
1 domain prediction
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Lj4g3v2295530.1
n.a. p21-activated protein kinase-interacting protein 1-like protein [Medicago truncatula] gi|357450557|ref|XP_003595555.1| chr4 31975006 31980071 +
1 domain prediction
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Lj4g3v2717130.1
n.a. PREDICTED: myosin heavy chain kinase B-like [Glycine max] gi|356528432|ref|XP_003532807.1| chr4 36600065 36602899 +
1 domain prediction
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Lj4g3v2991190.1
n.a. transducin family protein [Arabidopsis lyrata subsp]. lyrata] gi|297809371|ref|XP_002872569.1| chr4 39541977 39547126 -
1 domain prediction
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Lj4g3v2991190.2
n.a. Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao] gi|508777604|gb|EOY24860.1| chr4 39541977 39547126 -
1 domain prediction
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Lj4g3v3061490.3
n.a. U-box domain-containing protein [Medicago truncatula] gi|357520957|ref|XP_003630767.1| chr4 40818554 40821104 +
1 domain prediction
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Lj4g3v3096100.1
n.a. Stomatal cytokinesis defective / SCD1 protein (SCD1) isoform 1 [Theobroma cacao] gi|508773727|gb|EOY20983.1| chr4 41111013 41123830 -
1 domain prediction
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Lj5g3v0310300.1
n.a. F-box protein [Medicago truncatula] gi|357437563|ref|XP_003589057.1| chr5 3168711 3171364 -
1 domain prediction
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Lj5g3v0310310.1
n.a. PREDICTED: F-box protein At3g12350-like [Cicer arietinum] gi|502125603|ref|XP_004498990.1| chr5 3169037 3171364 -
1 domain prediction
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Lj6g3v1093610.1
n.a. p21-activated protein kinase-interacting protein 1-like protein [Medicago truncatula] gi|357450557|ref|XP_003595555.1| chr6 13440261 13443733 -
1 domain prediction
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Lj6g3v1464020.1
n.a. transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|334185156|ref|NP_001189833.1| chr6 17197175 17203576 -
1 domain prediction
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Lj6g3v1464020.2
n.a. transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|334185154|ref|NP_187344.5| chr6 17197175 17203576 -
1 domain prediction
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LotjaGi1g1v0183900.1
n.a. Transducin/WD40 repeat protein; TAIR: AT5G50120.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|O48716|JGB_ARATH Protein JINGUBANG; TrEMBL-Plants: tr|I1KCK1|I1KCK1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0183900 LjG1.1_chr1 35903167 35906483 -
1 domain prediction
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LotjaGi1g1v0404200.1
n.a. Transducin/WD40 repeat protein; TAIR: AT3G50390.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|O48716|JGB_ARATH Protein JINGUBANG; TrEMBL-Plants: tr|K7KTX1|K7KTX1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0404200 LjG1.1_chr1 89298328 89300671 -
1 domain prediction
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LotjaGi2g1v0313800.1
n.a. Transducin/WD40 repeat protein; TAIR: AT1G24130.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|O48716|JGB_ARATH Protein JINGUBANG; TrEMBL-Plants: tr|A0A1J7GSN1|A0A1J7GSN1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0313800 LjG1.1_chr2 78880185 78882704 +
1 domain prediction
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LotjaGi2g1v0397200.1
n.a. WD40-repeat protein; TAIR: AT3G50390.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|O48716|JGB_ARATH Protein JINGUBANG; TrEMBL-Plants: tr|I1J928|I1J928_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0397200 LjG1.1_chr2 89466352 89468517 -
1 domain prediction
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LotjaGi3g1v0019300.1
n.a. Transducin/WD40 repeat protein; TAIR: AT3G50390.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|O48716|JGB_ARATH Protein JINGUBANG; TrEMBL-Plants: tr|V7C039|V7C039_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0019300 LjG1.1_chr3 2023192 2026116 -
1 domain prediction
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LotjaGi3g1v0019300.2
n.a. Transducin/WD40 repeat protein; TAIR: AT2G26490.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|O48716|JGB_ARATH Protein JINGUBANG; TrEMBL-Plants: tr|A0A0B2NTE5|A0A0B2NTE5_GLYSO Putative WD repeat-containing protein; Found in the gene: LotjaGi3g1v0019300 LjG1.1_chr3 2023432 2024841 -
1 domain prediction
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LotjaGi3g1v0503100_LC.1
n.a. WD40-repeat protein; TAIR: AT3G18950.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|O48716|JGB_ARATH Protein JINGUBANG; TrEMBL-Plants: tr|A0A072ULX7|A0A072ULX7_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi3g1v0503100_LC LjG1.1_chr3 92127679 92133259 -
1 domain prediction
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LotjaGi3g1v0545700.1
n.a. Transducin/WD40 repeat protein; TAIR: AT3G51930.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|O48716|JGB_ARATH Protein JINGUBANG; TrEMBL-Plants: tr|A0A0L9V892|A0A0L9V892_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0545700 LjG1.1_chr3 96181611 96183389 +
1 domain prediction
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LotjaGi3g1v0545700.2
n.a. Transducin/WD40 repeat protein; TAIR: AT3G51930.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|O48716|JGB_ARATH Protein JINGUBANG; TrEMBL-Plants: tr|A0A0L9V892|A0A0L9V892_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0545700 LjG1.1_chr3 96181736 96183150 +
1 domain prediction
 –