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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0019700 |
| Transcript ID | LotjaGi3g1v0019700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin-like protein; TAIR: AT3G16240.1 delta tonoplast integral protein; Swiss-Prot: sp|Q41951|TIP21_ARATH Aquaporin TIP2-1; TrEMBL-Plants: tr|I3S7T3|I3S7T3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0019700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2042658..2044508) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGGCATAGCATTTGGACGGTTTGATGATTCTTTCAGTTTTGGCTCCATCAAAGCCTATATTGCTGAGTTCATCTC AACCTTGATCTTTGTTTTTGCTGGTGTTGGCTCAGCCATAGCCTATGGTTAGTTTATCTAAGAATAGAACTTAAGATATC ACTAGAGCTACACTCAAGTAATACCATTTTTTTTCCTCACCATGATGAGGTATATCAGTAGCATGAAATAAGTGTGTTTC GTTTCATGTTTGGAAGCTTTAAAATCAATTTGGCGGAGAAGCCTGAGATAGTAGCTTCTACAATGGACATTTAATTATGA GATTTCATAACTGAATTTCGTAACATTATCCTATAGAAATTAATTTTTTCACACTTTTCAACTCATTTTAACACACTTTT CTATAATCACTTTTATCAATATTATTTTATCCATAATCAATTTTTACAACGCTGATCACTTATACTTCTTTTTGCAGGCA AATTGACATCAGATGCAGCTCTTGACCCTGCTGGGTTGGTGGCTGTTGCTATTTGCCATGCTTTTGCTCTTTTTGTTGCT GTTTCTGTTGGAGCCAACATTTCTGGTGGCCATGTCAACCCAGCTGTGACATTTGGGTTGGCTCTTGGTGGCCAGATCAC ACTCCTCACTGGTCTCTTCTACTGGATTGCACAGCTTCTTGGCTCCATAGTTGCATGCTTTCTCCTCAAGTTTGTCACAG GAGGCTTGGTAAGTTCAAAGTTGAACCTTATATCTTCCATGATTCAACCACTTTCTGGTCAAACATGGAAAAATTATCAT TAATTCTTGCACTAGAAGCTTCATGCATAAACAGAATCATATCTGTCTTTTTGCTATTCATCATATTGAGGGGACACTGG TGTTAGGTAGTGGGTATAAATCTGTTTGAATAGAGTTTCATGATTTCTCTTTAGTGTGAAATAAACACTTTCAATTAGTG TGGTGTGTATGCTTTTGATGAGTGTGCTAGCTAGAGTGAACTATTTGTTGATTGAAATATAAAGAGTTTCTCAAATCTAC TCTCTATGGTAAAGGAAAAAATAAAGTGCTGACCCTTTATTTAAGTTAGCACAATCACAATCACCCCTACAGTAGTGTTT TGGCTGTCCTTAGCAAAAGTTTTTTCCCCCTCTCCAAGGGTGGTGGATTTGGGTTCCTGTGCAGTCAGATCCATCTAAAA TTCACATAGTCAAGGAGTTTGAGTCGTTCGATCAAGATCAGACGACTCATGTTTTATCAACATTGAATGATAGAGATAAG TTTAAAATCTTAACAGGTTGATCTTAATAGAATGGCTCAGATGTCTTGACTGCGTGCATTTAAGATTCTATCAGTGTTAT GAATCTTGCAGAACAATAACTCACCTATCTTGATAGAATGACTCAGATTTCTTGACTACATGCATTTTCATGTTCATTTT TTATTTTTGTTAAAAAGTAGAAACTGAGTGAATGATATTCCTTGTCAGACTTTGCCAATCCACAGTGTTGCTGCTGGAGC TGGTGAAGGAGTTGTTACAGAAATCATCATCACCTTTGGATTGGTGTACACTGTGTATGCCACTGCAGCTGACCCCAAGA AGGGATCATTGGGCACAATTGCACCCATTGCAATTGGTTTCATTGTTGGTGCCAACATCTTAGCTGCAGGGCCATTCTCT GGTGGGTCAATGAACCCAGCACGCTCCTTTGGCCCTGCAGTTGTCAGTGGTGACTTCCATGACAACTGGATCTACTGGGT TGGACCTCTCATTGGTGGTGGCTTGGCTGGTGTTATCTACACCTATGTGTTCTTCCCCTCCCAGCATGCACCTCTGGCCA GTGATTTTTGA
CDS sequence (LotjaGi3g1v0019700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGCATAGCATTTGGACGGTTTGATGATTCTTTCAGTTTTGGCTCCATCAAAGCCTATATTGCTGAGTTCATCTC AACCTTGATCTTTGTTTTTGCTGGTGTTGGCTCAGCCATAGCCTATGGCAAATTGACATCAGATGCAGCTCTTGACCCTG CTGGGTTGGTGGCTGTTGCTATTTGCCATGCTTTTGCTCTTTTTGTTGCTGTTTCTGTTGGAGCCAACATTTCTGGTGGC CATGTCAACCCAGCTGTGACATTTGGGTTGGCTCTTGGTGGCCAGATCACACTCCTCACTGGTCTCTTCTACTGGATTGC ACAGCTTCTTGGCTCCATAGTTACTTTGCCAATCCACAGTGTTGCTGCTGGAGCTGGTGAAGGAGTTGTTACAGAAATCA TCATCACCTTTGGATTGGTGTACACTGTGTATGCCACTGCAGCTGACCCCAAGAAGGGATCATTGGGCACAATTGCACCC ATTGCAATTGGTTTCATTGTTGGTGCCAACATCTTAGCTGCAGGGCCATTCTCTGGTGGGTCAATGAACCCAGCACGCTC CTTTGGCCCTGCAGTTGTCAGTGGTGACTTCCATGACAACTGGATCTACTGGGTTGGACCTCTCATTGGTGGTGGCTTGG CTGGTGTTATCTACACCTATGTGTTCTTCCCCTCCCAGCATGCACCTCTGGCCAGTGATTTTTGA
Protein sequence (LotjaGi3g1v0019700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGIAFGRFDDSFSFGSIKAYIAEFISTLIFVFAGVGSAIAYGKLTSDAALDPAGLVAVAICHAFALFVAVSVGANISGG HVNPAVTFGLALGGQITLLTGLFYWIAQLLGSIVTLPIHSVAAGAGEGVVTEIIITFGLVYTVYATAADPKKGSLGTIAP IAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLIGGGLAGVIYTYVFFPSQHAPLASDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 234 | 234 | 1.3E-130 | ||
| PANTHER | 1 | 234 | 234 | 1.3E-130 | – | |
| Gene3D | 2 | 233 | 232 | 5.0E-79 | ||
| SUPERFAMILY | 13 | 229 | 217 | 5.76E-62 | ||
| Pfam | 16 | 115 | 100 | 1.7E-30 | ||
| CDD | 19 | 221 | 203 | 2.93485E-57 | ||
| PRINTS | 19 | 38 | 20 | 9.2E-54 | ||
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 21 | 42 | 22 | - | – | |
| Phobius | 43 | 53 | 11 | - | – | |
| Phobius | 54 | 73 | 20 | - | – | |
| TMHMM | 55 | 77 | 23 | - | – | |
| PRINTS | 63 | 87 | 25 | 9.2E-54 | ||
| Phobius | 74 | 84 | 11 | - | – | |
| ProSitePatterns | 81 | 89 | 9 | - | ||
| Phobius | 85 | 106 | 22 | - | – | |
| TMHMM | 92 | 114 | 23 | - | – | |
| PRINTS | 100 | 119 | 20 | 9.2E-54 | ||
| Phobius | 107 | 117 | 11 | - | – | |
| Phobius | 118 | 143 | 26 | - | – | |
| TMHMM | 121 | 143 | 23 | - | – | |
| Pfam | 123 | 218 | 96 | 5.0E-37 | ||
| PRINTS | 131 | 149 | 19 | 9.2E-54 | ||
| Phobius | 144 | 154 | 11 | - | – | |
| Phobius | 155 | 177 | 23 | - | – | |
| TMHMM | 158 | 180 | 23 | - | – | |
| PRINTS | 164 | 186 | 23 | 9.2E-54 | ||
| Phobius | 178 | 200 | 23 | - | – | |
| PRINTS | 201 | 221 | 21 | 9.2E-54 | ||
| Phobius | 201 | 223 | 23 | - | – | |
| TMHMM | 201 | 223 | 23 | - | – | |
| Phobius | 224 | 234 | 11 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0019700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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