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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0055200 |
| Transcript ID | LotjaGi3g1v0055200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Organic cation/carnitine transporter; TAIR: AT1G16390.1 organic cation/carnitine transporter 3; Swiss-Prot: sp|Q9SA38|OCT3_ARATH Organic cation/carnitine transporter 3; TrEMBL-Plants: tr|G7JJL6|G7JJL6_MEDTR Organic cation/carnitine transporter; Found in the gene: LotjaGi3g1v0055200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5753754..5755299) extracted from Lotus japonicus Gifu genome v1.2.
GTAAGCAGTAACAAGAAAATACAGGATTGAAATGGAAGATTCAGTTCCAGTTTTAACAAAAACTTATTATTTTGCTGAGC AGGAACAATTGGAATATGACATGATGGAGAAGGGTTTGGGAACATTTGGCTGCGCGGAGTTCATGCAATGCATCCTTGTA TCCTTAGCAATGTTTTTTGATGCACAACAATCATTCATAAGCATCTACACTGATGACTACCCATCATGGCACTGCACTGA TTTCACCACATGCAGCCCAGGTTCCAACATCTGCAACATCCCAAAATCTTCATGGTCTTGGGATGGACCAATTCACAAGA CAGTGGTATCCCAATGGGGCCTTGAATGTGCAAGTGACTTTGTCATAGGTTTACCCCAATCTTGCTTCTTCATTGGTTGC CTCCTTGGTTCATTTCTCTTAGCAACATTAGCTGATACATCTCTTGGAAGAAAGAACATGCTCATTCTGTCTTGTTTAGC AATGTCAGTAACTTCAATCATCATTGTCTTCTCCACCAATGTTTGGATTTACTCAGCTTTCAAATTCTTGATTGGGTTTT GGCGTTCGACGATCGGAACATGTGTTCTGGTTTTACTGACAGAGAAGGTGAGCACAGAGTGGAGGTTCACAGTGGGGATT GTAGAATATTTCTGCTTCACTATAGGGTATATGTCCTTGCCCGGTATAGCTTATGTCAATAGATTTTCGTCATGGAAAGC TAATTACATTTGGACATCGATTCCTGCGATTGTTTACTCAATCATAGCTTACATTTTTGTTACTGAGTCTCCAAGGTGGC TTCTCATGCAAGGTAGACAGGAAGAAGCAATAGCAATGCTGAAAGGAGTGTCCGCAGCAGAAAACGGGGTTGATTTAACT GCAAGTTTACTAAAAGCGCCGCCTCCCCCAAAGGCTTCAATTTTCCAACTTTACTCATCAATAGCAGAGTTGTTTGAGAG AAGTTGGGCTCTAAAGCGAATGGTGGCGATTATGGTGCTTGGTATTGGCATTGGAATGGTGTATTTTGGAATGCCACTGG CTGTGGGGAACTTGGGATTTGATATTTACTTGGCTGTTGTGTTCAATGCCTTGATGGAATTTCCTTCTTGTGTTGCAACA TATTTCTTGGAAAATTGCAGGAGAAAGCCATCTATTCTTGTATTCTCAGTTGCAAGTGGAGTATGTTGTGTAATGTGTGT TCTTGTGGGAAGTGGGCTACAAGAAGTTAAAGTTGGTCTAGCATTGATTTCATTTTTCAGTGCTTGCACAGCTTATAATG TGTTTCTGATATACATTATAGAGTTGTTTCCTACAAGTGTGAGGAACACTACAACTTCATTGGTGAGACAAGCTATTGTG TTTGGTAACATATTCAGCCCCTTTTTGATATCTGCAGGGAGGAAAAATGACTTCTTCTCTTATGGTGTATTTGGAATAGT AATAATGGCATCTTGTATTACATTGCTCGGTTTGCCGGAGACCAGAGGACAAGCTCTTTGTGATACCATGGATCAACAAG AGAAAAAAGAACATTCACCTGTGTAG
CDS sequence (LotjaGi3g1v0055200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATTCAGTTCCAGTTTTAACAAAAACTTATTATTTTGCTGAGCAGGAACAATTGGAATATGACATGATGGAGAA GGGTTTGGGAACATTTGGCTGCGCGGAGTTCATGCAATGCATCCTTGTATCCTTAGCAATGTTTTTTGATGCACAACAAT CATTCATAAGCATCTACACTGATGACTACCCATCATGGCACTGCACTGATTTCACCACATGCAGCCCAGGTTCCAACATC TGCAACATCCCAAAATCTTCATGGTCTTGGGATGGACCAATTCACAAGACAGTGGTATCCCAATGGGGCCTTGAATGTGC AAGTGACTTTGTCATAGGTTTACCCCAATCTTGCTTCTTCATTGGTTGCCTCCTTGGTTCATTTCTCTTAGCAACATTAG CTGATACATCTCTTGGAAGAAAGAACATGCTCATTCTGTCTTGTTTAGCAATGTCAGTAACTTCAATCATCATTGTCTTC TCCACCAATGTTTGGATTTACTCAGCTTTCAAATTCTTGATTGGGTTTTGGCGTTCGACGATCGGAACATGTGTTCTGGT TTTACTGACAGAGAAGGTGAGCACAGAGTGGAGGTTCACAGTGGGGATTGTAGAATATTTCTGCTTCACTATAGGGTATA TGTCCTTGCCCGGTATAGCTTATGTCAATAGATTTTCGTCATGGAAAGCTAATTACATTTGGACATCGATTCCTGCGATT GTTTACTCAATCATAGCTTACATTTTTGTTACTGAGTCTCCAAGGTGGCTTCTCATGCAAGGTAGACAGGAAGAAGCAAT AGCAATGCTGAAAGGAGTGTCCGCAGCAGAAAACGGGGTTGATTTAACTGCAAGTTTACTAAAAGCGCCGCCTCCCCCAA AGGCTTCAATTTTCCAACTTTACTCATCAATAGCAGAGTTGTTTGAGAGAAGTTGGGCTCTAAAGCGAATGGTGGCGATT ATGGTGCTTGGTATTGGCATTGGAATGGTGTATTTTGGAATGCCACTGGCTGTGGGGAACTTGGGATTTGATATTTACTT GGCTGTTGTGTTCAATGCCTTGATGGAATTTCCTTCTTGTGTTGCAACATATTTCTTGGAAAATTGCAGGAGAAAGCCAT CTATTCTTGTATTCTCAGTTGCAAGTGGAGTATGTTGTGTAATGTGTGTTCTTGTGGGAAGTGGGCTACAAGAAGTTAAA GTTGGTCTAGCATTGATTTCATTTTTCAGTGCTTGCACAGCTTATAATGTGTTTCTGATATACATTATAGAGTTGTTTCC TACAAGTGTGAGGAACACTACAACTTCATTGGTGAGACAAGCTATTGTGTTTGGTAACATATTCAGCCCCTTTTTGATAT CTGCAGGGAGGAAAAATGACTTCTTCTCTTATGGTGTATTTGGAATAGTAATAATGGCATCTTGTATTACATTGCTCGGT TTGCCGGAGACCAGAGGACAAGCTCTTTGTGATACCATGGATCAACAAGAGAAAAAAGAACATTCACCTGTGTAG
Protein sequence (LotjaGi3g1v0055200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDSVPVLTKTYYFAEQEQLEYDMMEKGLGTFGCAEFMQCILVSLAMFFDAQQSFISIYTDDYPSWHCTDFTTCSPGSNI CNIPKSSWSWDGPIHKTVVSQWGLECASDFVIGLPQSCFFIGCLLGSFLLATLADTSLGRKNMLILSCLAMSVTSIIIVF STNVWIYSAFKFLIGFWRSTIGTCVLVLLTEKVSTEWRFTVGIVEYFCFTIGYMSLPGIAYVNRFSSWKANYIWTSIPAI VYSIIAYIFVTESPRWLLMQGRQEEAIAMLKGVSAAENGVDLTASLLKAPPPPKASIFQLYSSIAELFERSWALKRMVAI MVLGIGIGMVYFGMPLAVGNLGFDIYLAVVFNALMEFPSCVATYFLENCRRKPSILVFSVASGVCCVMCVLVGSGLQEVK VGLALISFFSACTAYNVFLIYIIELFPTSVRNTTTSLVRQAIVFGNIFSPFLISAGRKNDFFSYGVFGIVIMASCITLLG LPETRGQALCDTMDQQEKKEHSPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 22 | 500 | 479 | 7.1E-238 | – | |
| PANTHER | 22 | 500 | 479 | 7.1E-238 | – | |
| Phobius | 29 | 49 | 21 | - | – | |
| Gene3D | 35 | 499 | 465 | 1.2E-54 | – | |
| ProSiteProfiles | 39 | 485 | 447 | 15.014 | ||
| Phobius | 50 | 109 | 60 | - | – | |
| CDD | 78 | 482 | 405 | 3.35783E-145 | – | |
| SUPERFAMILY | 107 | 489 | 383 | 1.14E-39 | ||
| Pfam | 108 | 489 | 382 | 7.5E-28 | ||
| Phobius | 110 | 131 | 22 | - | – | |
| TMHMM | 111 | 133 | 23 | - | – | |
| Phobius | 132 | 142 | 11 | - | – | |
| Phobius | 143 | 166 | 24 | - | – | |
| TMHMM | 145 | 167 | 23 | - | – | |
| Phobius | 167 | 171 | 5 | - | – | |
| TMHMM | 172 | 189 | 18 | - | – | |
| Phobius | 172 | 189 | 18 | - | – | |
| Phobius | 190 | 200 | 11 | - | – | |
| TMHMM | 201 | 223 | 23 | - | – | |
| Phobius | 201 | 220 | 20 | - | – | |
| Phobius | 221 | 231 | 11 | - | – | |
| Phobius | 232 | 250 | 19 | - | – | |
| TMHMM | 233 | 250 | 18 | - | – | |
| Phobius | 251 | 317 | 67 | - | – | |
| TMHMM | 318 | 340 | 23 | - | – | |
| Phobius | 318 | 339 | 22 | - | – | |
| Phobius | 340 | 344 | 5 | - | – | |
| TMHMM | 345 | 367 | 23 | - | – | |
| Phobius | 345 | 366 | 22 | - | – | |
| Phobius | 367 | 374 | 8 | - | – | |
| TMHMM | 374 | 396 | 23 | - | – | |
| Phobius | 375 | 396 | 22 | - | – | |
| Phobius | 397 | 401 | 5 | - | – | |
| TMHMM | 401 | 423 | 23 | - | – | |
| Phobius | 402 | 425 | 24 | - | – | |
| Phobius | 426 | 436 | 11 | - | – | |
| TMHMM | 436 | 455 | 20 | - | – | |
| Phobius | 437 | 455 | 19 | - | – | |
| Phobius | 456 | 460 | 5 | - | – | |
| TMHMM | 460 | 482 | 23 | - | – | |
| Phobius | 461 | 481 | 21 | - | – | |
| Phobius | 482 | 504 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0055200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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