Domain Predictions — View

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cd17378

Source: CDD

Description

MFS_OCT_plant

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 7

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi2g1v0002500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Organic cation/carnitine transporter; TAIR: AT1G16390.1 organic cation/carnitine transporter 3; Swiss-Prot: sp\|Q9SA38\|OCT3_ARATH Organic cation/carnitine transporter 3; TrEMBL-Plants: tr\|G7LG23\|G7LG23_MEDTR Organic cation/carnitine transporter; Found in the gene: LotjaGi2g1v0002500	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR005828 IPR020846 IPR036259 NON_CYTOPLASMIC_DOMAIN PF00083 PS50850 PTHR24064 PTHR24064:SF338 SSF103473 TMhelix TRANSMEMBRANE cd17378	14
LotjaGi3g1v0055200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Organic cation/carnitine transporter; TAIR: AT1G16390.1 organic cation/carnitine transporter 3; Swiss-Prot: sp\|Q9SA38\|OCT3_ARATH Organic cation/carnitine transporter 3; TrEMBL-Plants: tr\|A0A072UJG0\|A0A072UJG0_MEDTR Organic cation/carnitine transporter; Found in the gene: LotjaGi3g1v0055200	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR005828 IPR020846 IPR036259 NON_CYTOPLASMIC_DOMAIN PF00083 PS50850 PTHR24064 PTHR24064:SF338 SSF103473 TMhelix TRANSMEMBRANE cd17378	14
LotjaGi3g1v0055200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Organic cation/carnitine transporter; TAIR: AT1G16390.1 organic cation/carnitine transporter 3; Swiss-Prot: sp\|Q9SA38\|OCT3_ARATH Organic cation/carnitine transporter 3; TrEMBL-Plants: tr\|A0A072UJG0\|A0A072UJG0_MEDTR Organic cation/carnitine transporter; Found in the gene: LotjaGi3g1v0055200	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR005828 IPR020846 IPR036259 NON_CYTOPLASMIC_DOMAIN PF00083 PS50850 PTHR24064 PTHR24064:SF338 SSF103473 TMhelix TRANSMEMBRANE cd17378	14
LotjaGi3g1v0055200.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Organic cation/carnitine transporter; TAIR: AT1G16390.1 organic cation/carnitine transporter 3; Swiss-Prot: sp\|Q9SA38\|OCT3_ARATH Organic cation/carnitine transporter 3; TrEMBL-Plants: tr\|G7JJL6\|G7JJL6_MEDTR Organic cation/carnitine transporter; Found in the gene: LotjaGi3g1v0055200	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR005828 IPR020846 IPR036259 NON_CYTOPLASMIC_DOMAIN PF00083 PS50850 PTHR24064 PTHR24064:SF338 SSF103473 TMhelix TRANSMEMBRANE cd17378	14
LotjaGi3g1v0233100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Organic cation transporter, putative; TAIR: AT3G20660.1 organic cation/carnitine transporter4; Swiss-Prot: sp\|Q9LHQ6\|OCT4_ARATH Organic cation/carnitine transporter 4; TrEMBL-Plants: tr\|A2Q643\|A2Q643_MEDTR Major facilitator superfamily; Found in the gene: LotjaGi3g1v0233100	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR005828 IPR005829 IPR020846 IPR036259 NON_CYTOPLASMIC_DOMAIN PF00083 PS00216 PS00217 PS50850 PTHR24064 PTHR24064:SF499 SSF103473 TMhelix TRANSMEMBRANE cd17378	17
LotjaGi3g1v0317700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Organic cation/carnitine transporter; TAIR: AT1G16390.1 organic cation/carnitine transporter 3; Swiss-Prot: sp\|Q9SA38\|OCT3_ARATH Organic cation/carnitine transporter 3; TrEMBL-Plants: tr\|G7LG23\|G7LG23_MEDTR Organic cation/carnitine transporter; Found in the gene: LotjaGi3g1v0317700	Domains CYTOPLASMIC_DOMAIN G3DSA:1.20.1250.20 IPR005828 IPR020846 IPR036259 NON_CYTOPLASMIC_DOMAIN PF00083 PS50850 PTHR24064 PTHR24064:SF338 SSF103473 TMhelix TRANSMEMBRANE cd17378 mobidb-lite	15
LotjaGi4g1v0340500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Organic cation/carnitine transporter; TAIR: AT1G16390.1 organic cation/carnitine transporter 3; Swiss-Prot: sp\|Q9SA38\|OCT3_ARATH Organic cation/carnitine transporter 3; TrEMBL-Plants: tr\|G7LG23\|G7LG23_MEDTR Organic cation/carnitine transporter; Found in the gene: LotjaGi4g1v0340500	Domains CYTOPLASMIC_DOMAIN IPR005828 IPR020846 IPR036259 NON_CYTOPLASMIC_DOMAIN PF00083 PS50850 PTHR24064 PTHR24064:SF338 SSF103473 TMhelix TRANSMEMBRANE cd17378 mobidb-lite	14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	14.29