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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0055800 |
| Transcript ID | LotjaGi3g1v0055800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cation/H(+) antiporter; TAIR: AT1G16380.1 Cation/hydrogen exchanger family protein; Swiss-Prot: sp|Q9SA37|CHX1_ARATH Cation/H(+) antiporter 1; TrEMBL-Plants: tr|A0A0B2QCT0|A0A0B2QCT0_GLYSO Cation/H(+) antiporter 1; Found in the gene: LotjaGi3g1v0055800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5864430..5867197) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACGCCACTCACACAATGTTTTGTGACAATGATCTGGTTAACCCTCTAAGCTCCATGGGCATGCAAGTTTCCTGCAT TCTTGTTGTCTCACACGTCTTCAACGTGGTGCTTAGAACAGTTGGTCAACCTGGACCCATTGCACAAATTCTGGTAATCA ATCAATCAATTAATCACCTTAATTTTGTTAATTAAGTACATTTTTTGTATTGAATTATATTTTAATTAATTCTTGGTGCA TTGTTTAACAGGCAGGGTTGGTACTAGGTCCAATGTCTCATATAGAGTATATACAAGCAACATTTTTTCCTGCAAGTTCC ATAAATTACTATGAAGTTGTGAGCTTTTTCTGTAGAATACATTTCATGTTCTTATTTGGGTTAGAGATGAACATTCACTA CACAATGCGCAATCTACGCTTGGTTAGCTTGGTAGCCTGTGGTGGTGCCCTAATGGGTGGTGTTTTTGGTCTATCTGTGT CCTTTTATTTGTATCAAGAGTTAGACACAGATGCCCCAATATATTATTTTTGTATGATTATTATGCTAGTGGTTTCATAC ACAAGCTCTCCCATGGTGATTCGTTTGGCAGCGGAATTGAGGTTTGCTGCATCGGGTATTGGGCGAATCGCGGTGTCCTC TGCACTGATTACAGAAATCGGTTGCTTGGTGTTCTTCAATGTGATGGTTAATTGGAAAAGAGAAAACCACATTTCAGCTG GTTTTGGTTGCATTATCATTACAGCCCTGGTGATTTTGATAAACAGGTACTTAGCTGTTTGGTTAAACACACGGAATCGG AACCAGAAGTACCTTAAGGCACCTGAGCTGTTACTCATCCTGTTTCTGCTTCTGGCGAGCTCAATGATTATTGAGATTTG GGGTTACAATAGTATCATTAGTTGCTTCATCATTGGCTTGATGTTTCCTAAGGAAGGCAAAACGGCTAGAACATTGGTGC ATAAGCTTGGTTATTCTATTTATAACTTTGTGCTTCCAGTGTACTTTGGCTACTTGGGTTTGCAATGTGACCTCATATAT GTCTTCCGGAGCTTGAACCGGATGGCGAACACGGCCATATTGATCTTGTTGAGCATTGGCAGCAAGCTTGGAGGCACTCT TGTGGTTTGCCGTTCCCTTCGGATTCCCACAAGTGAAGGAATTTTTCTTGGCTTCATATTGAACACTAGAGGTTATGCTG ATCTGCTATTCATTGGTGCAGCAGCAAAGCAAATCATTGTGAGTATATTTCCTATAAATTGATTGGGTTAGGCTGTGTTT GGAAGAGCGTATTTGAGCTTATCTTATGACTTGTGCAAGTGCTTGGGCGAGCTTATGAAAATTGCTTATGACCTACGTAT TATCTGTTTTGAGCTTATTTTCATAAGCTGTTCATATTAACTAATGAATAAGTGTTTATACCTACTACCTATAAGATATT TTGAACTCAAATTAGCTTATGGATAAGCTCTTCATAAAATTGTTTACCCAAATATACCCTTAATATGAAGTAGAATATAA AGTATATGATAATTAAGTGGCTCTTGTGTTGATTTGCAGACGTTTGATTCAGAGGCTTACAATGTGTTGTTAGTATCAAT AGTTTTGAACACGATAATATCAGGAATAATTGTGGCTTTTCTAGCAAGGGGGGAAGAGAAAATGTTTGCAAACAACCACA CTGCAATTGAGCCTCAGCAAATGGAGGATGAGCTTCGAATTCTTGCCTGTGTATATGATCCGCGTCAAGTATCTGCTATA CTCGCGACAGTGCTAGCAATGCACGGCACGAGAGCATCACCATCCACCACTTATTTGATGCACCTAATAGAGCTTGTGAA GAAGATCAAGTCTAACTTATTATACCATGAAAAAGAAAACGCTGACATTAGCGACGATGATGACTATGGTGGCAATGATG TTGTGGAAATCAATAATGCTTTAGATGCCTTCACTGCAGACACAGCGATTTTGGTCCACCAAAGAAGGGCAGTGTCTCCT TTCCCAAGTTTGTATGAAGATGTTTGCAATGAAGCAGAGGATCTTCAAGTGTCCATCATTCTACTTCCCTTCCACAAGCA TCAGCGAATCGATGGAAAATTGGAAAGTGGGAAGGAAGGTATAAGGATTACCAATCAGAAGGTTCTTAGACATGCTCCTT GTTCTGTTGGTGTCATTGTAGAAAGAGGACTTGCAAAGGTCCCTGGTTTCTCACAGTTAGTTGCATCTGAAGCCATACAA AATATTGCAACACTTTTCTTCGGAGGCCCGGATGATCGTGAAGCTATCGCTTGGAGCCTACGCATTTCCAAAAGCCCTCG AGTTAACTTAACGATCATCAGATTTCTGCTGTCTTCTTCTTCATCATCACAGAACGAACCAATTGAAAGTGGACAATCTG AGGACAAAGAAATTCTAATGTCCTTGTCTGGGGAAGAGACAGTGAATGAGATTGACAACACCTTTATGGTTGATTTCTAT AATAGGTATGTAACCTCAGGCCAAATTGGATATGTGGAGAAGTTTGTGAAGGATGGAGCAGAAACAGTGGACTCTTTGAA AGAGATAGGGGACATGTACTCTTTGTTTATAGTAGGAAAGGGTGGTAGAGGAAATAGTTCATTAACAATAGGTATGAGTG ATTGGGAGGAGTGTCCAGAACTTGGAACAGTTGGTGATGTCTTGGCTTCTTCAGACTTTGATATTCATGGCTCAGTTTTG GTCATTCAACAGCATAGAGATGCCAAGAAAGGCCTAATGCACGATTAG
CDS sequence (LotjaGi3g1v0055800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGCCACTCACACAATGTTTTGTGACAATGATCTGGTTAACCCTCTAAGCTCCATGGGCATGCAAGTTTCCTGCAT TCTTGTTGTCTCACACGTCTTCAACGTGGTGCTTAGAACACTGGCGAGCTCAATGATTATTGAGATTTGGGGTTACAATA GTATCATTAGTTGCTTCATCATTGGCTTGATGTTTCCTAAGGAAGGCAAAACGGCTAGAACATTGGTGCATAAGCTTGGT TATTCTATTTATAACTTTGTGCTTCCAGTGTACTTTGGCTACTTGGGTTTGCAATGTGACCTCATATATGTCTTCCGGAG CTTGAACCGGATGGCGAACACGGCCATATTGATCTTGTTGAGCATTGGCAGCAAGCTTGGAGGCACTCTTGTGGTTTGCC GTTCCCTTCGGATTCCCACAAGTGAAGGAATTTTTCTTGGCTTCATATTGAACACTAGAGGTTATGCTGATCTGCTATTC ATTGGTGCAGCAGCAAAGCAAATCATTACGTTTGATTCAGAGGCTTACAATGTGTTGTTAGTATCAATAGTTTTGAACAC GATAATATCAGGAATAATTGTGGCTTTTCTAGCAAGGGGGGAAGAGAAAATGTTTGCAAACAACCACACTGCAATTGAGC CTCAGCAAATGGAGGATGAGCTTCGAATTCTTGCCTGTGTATATGATCCGCGTCAAGTATCTGCTATACTCGCGACAGTG CTAGCAATGCACGGCACGAGAGCATCACCATCCACCACTTATTTGATGCACCTAATAGAGCTTGTGAAGAAGATCAAGTC TAACTTATTATACCATGAAAAAGAAAACGCTGACATTAGCGACGATGATGACTATGGTGGCAATGATGTTGTGGAAATCA ATAATGCTTTAGATGCCTTCACTGCAGACACAGCGATTTTGGTCCACCAAAGAAGGGCAGTGTCTCCTTTCCCAAGTTTG TATGAAGATGTTTGCAATGAAGCAGAGGATCTTCAAGTGTCCATCATTCTACTTCCCTTCCACAAGCATCAGCGAATCGA TGGAAAATTGGAAAGTGGGAAGGAAGGTATAAGGATTACCAATCAGAAGGTTCTTAGACATGCTCCTTGTTCTGTTGGTG TCATTGTAGAAAGAGGACTTGCAAAGGTCCCTGGTTTCTCACAGTTAGTTGCATCTGAAGCCATACAAAATATTGCAACA CTTTTCTTCGGAGGCCCGGATGATCGTGAAGCTATCGCTTGGAGCCTACGCATTTCCAAAAGCCCTCGAGTTAACTTAAC GATCATCAGATTTCTGCTGTCTTCTTCTTCATCATCACAGAACGAACCAATTGAAAGTGGACAATCTGAGGACAAAGAAA TTCTAATGTCCTTGTCTGGGGAAGAGACAGTGAATGAGATTGACAACACCTTTATGGTTGATTTCTATAATAGGTATGTA ACCTCAGGCCAAATTGGATATGTGGAGAAGTTTGTGAAGGATGGAGCAGAAACAGTGGACTCTTTGAAAGAGATAGGGGA CATGTACTCTTTGTTTATAGTAGGAAAGGGTGGTAGAGGAAATAGTTCATTAACAATAGGTATGAGTGATTGGGAGGAGT GTCCAGAACTTGGAACAGTTGGTGATGTCTTGGCTTCTTCAGACTTTGATATTCATGGCTCAGTTTTGGTCATTCAACAG CATAGAGATGCCAAGAAAGGCCTAATGCACGATTAG
Protein sequence (LotjaGi3g1v0055800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDATHTMFCDNDLVNPLSSMGMQVSCILVVSHVFNVVLRTLASSMIIEIWGYNSIISCFIIGLMFPKEGKTARTLVHKLG YSIYNFVLPVYFGYLGLQCDLIYVFRSLNRMANTAILILLSIGSKLGGTLVVCRSLRIPTSEGIFLGFILNTRGYADLLF IGAAAKQIITFDSEAYNVLLVSIVLNTIISGIIVAFLARGEEKMFANNHTAIEPQQMEDELRILACVYDPRQVSAILATV LAMHGTRASPSTTYLMHLIELVKKIKSNLLYHEKENADISDDDDYGGNDVVEINNALDAFTADTAILVHQRRAVSPFPSL YEDVCNEAEDLQVSIILLPFHKHQRIDGKLESGKEGIRITNQKVLRHAPCSVGVIVERGLAKVPGFSQLVASEAIQNIAT LFFGGPDDREAIAWSLRISKSPRVNLTIIRFLLSSSSSSQNEPIESGQSEDKEILMSLSGEETVNEIDNTFMVDFYNRYV TSGQIGYVEKFVKDGAETVDSLKEIGDMYSLFIVGKGGRGNSSLTIGMSDWEECPELGTVGDVLASSDFDIHGSVLVIQQ HRDAKKGLMHD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 41 | 41 | 6.8E-239 | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 41 | 41 | 6.8E-239 | – | |
| Gene3D | 16 | 206 | 191 | 3.2E-17 | ||
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 20 | 38 | 19 | - | – | |
| Pfam | 32 | 198 | 167 | 8.1E-13 | ||
| Phobius | 39 | 49 | 11 | - | – | |
| PANTHER | 42 | 567 | 526 | 6.8E-239 | – | |
| PANTHER | 42 | 567 | 526 | 6.8E-239 | – | |
| TMHMM | 49 | 66 | 18 | - | – | |
| Phobius | 50 | 66 | 17 | - | – | |
| Phobius | 67 | 85 | 19 | - | – | |
| TMHMM | 81 | 103 | 23 | - | – | |
| Phobius | 86 | 105 | 20 | - | – | |
| Phobius | 106 | 111 | 6 | - | – | |
| Phobius | 112 | 132 | 21 | - | – | |
| TMHMM | 116 | 138 | 23 | - | – | |
| Phobius | 133 | 143 | 11 | - | – | |
| TMHMM | 143 | 165 | 23 | - | – | |
| Phobius | 144 | 164 | 21 | - | – | |
| Phobius | 165 | 175 | 11 | - | – | |
| Phobius | 176 | 198 | 23 | - | – | |
| TMHMM | 178 | 200 | 23 | - | – | |
| Phobius | 199 | 571 | 373 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Solute:proton antiporter activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0055800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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